Wall clock time and date at job start Tue Mar 31 2020 02:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47099 * 2 1 4 4 H 1.09002 * 115.54659 * 29.32518 * 3 2 1 5 5 C 1.53004 * 117.49894 * 243.62184 * 3 2 1 6 6 C 1.52997 * 117.50258 * 174.99883 * 3 2 1 7 7 H 1.09004 * 117.49788 * 359.97438 * 6 3 2 8 8 C 1.50694 * 117.50190 * 214.98098 * 6 3 2 9 9 O 1.21278 * 120.00107 * 359.97438 * 8 6 3 10 10 N 1.34777 * 120.00116 * 180.02562 * 8 6 3 11 11 C 1.46501 * 120.00206 * 185.06752 * 10 8 6 12 12 C 1.53001 * 110.01412 * 294.85659 * 11 10 8 13 13 N 1.46494 * 109.46952 * 306.54087 * 12 11 10 14 14 C 1.36943 * 119.99518 * 174.94321 * 13 12 11 15 15 H 1.07996 * 120.00325 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99691 * 179.97438 * 14 13 12 17 17 N 1.31617 * 120.00118 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99805 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47032 * 60.00387 * 18 16 14 20 20 H 1.48504 * 109.47069 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47361 * 300.00005 * 18 16 14 22 22 C 1.53874 * 110.03226 * 56.24644 * 11 10 8 23 23 C 1.54268 * 106.60013 * 119.28798 * 22 11 10 24 24 C 1.54893 * 104.30873 * 336.32376 * 23 22 11 25 25 C 1.54260 * 110.03574 * 173.41459 * 11 10 8 26 26 H 1.09004 * 109.46609 * 59.99999 * 1 2 3 27 27 H 1.09002 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47014 * 300.00125 * 1 2 3 29 29 H 1.09006 * 109.47467 * 240.00169 * 2 1 3 30 30 H 1.09000 * 109.47421 * 119.99620 * 2 1 3 31 31 H 1.08998 * 117.49620 * 145.01501 * 5 3 2 32 32 H 1.08994 * 117.49601 * 0.02562 * 5 3 2 33 33 H 0.97001 * 120.00152 * 5.06001 * 10 8 6 34 34 H 1.09003 * 109.47076 * 66.54028 * 12 11 10 35 35 H 1.09006 * 109.46859 * 186.53854 * 12 11 10 36 36 H 0.97000 * 120.00614 * 354.94119 * 13 12 11 37 37 H 0.97002 * 120.00185 * 179.97438 * 17 16 14 38 38 H 1.09003 * 110.03130 * 0.02562 * 22 11 10 39 39 H 1.09005 * 110.03184 * 238.57488 * 22 11 10 40 40 H 1.08999 * 110.48813 * 95.06503 * 23 22 11 41 41 H 1.09000 * 110.48786 * 217.57946 * 23 22 11 42 42 H 1.09003 * 110.75549 * 156.32556 * 24 23 22 43 43 H 1.09003 * 110.75317 * 279.69349 * 24 23 22 44 44 H 1.09002 * 110.48506 * 23.00212 * 25 11 10 45 45 H 1.08994 * 110.48983 * 145.64619 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1715 0.4817 5 6 2.8440 1.9076 -1.2159 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7721 0.1966 8 6 4.0228 2.8621 0.8914 9 8 3.2157 3.6170 1.3911 10 7 5.3423 3.1007 1.0267 11 6 5.8042 4.2062 1.8697 12 6 5.3568 5.5421 1.2729 13 7 5.7915 5.6230 -0.1237 14 6 5.4144 6.6880 -0.8975 15 1 4.7963 7.4681 -0.4784 16 6 5.8268 6.7649 -2.2208 17 7 6.5797 5.8140 -2.7319 18 14 5.3118 8.2174 -3.2766 19 1 5.8178 9.4746 -2.6696 20 1 5.8779 8.0631 -4.6408 21 1 3.8300 8.2688 -3.3590 22 6 5.2447 4.0518 3.2948 23 6 6.4615 3.9271 4.2349 24 6 7.5996 3.4082 3.3212 25 6 7.3414 4.1700 1.9935 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.7212 2.9428 -1.5344 32 1 3.0092 1.1860 -2.0159 33 1 5.9863 2.5403 0.5660 34 1 4.2703 5.6154 1.3201 35 1 5.8012 6.3603 1.8398 36 1 6.3465 4.9222 -0.5004 37 1 6.8675 5.8676 -3.6567 38 1 4.6299 3.1540 3.3593 39 1 4.6552 4.9290 3.5615 40 1 6.7216 4.8994 4.6533 41 1 6.2562 3.2124 5.0318 42 1 8.5747 3.6663 3.7343 43 1 7.5147 2.3317 3.1720 44 1 7.7792 3.6307 1.1534 45 1 7.7436 5.1814 2.0500 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698633943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:47 Heat of formation + Delta-G solvation = -41.276608 kcal Electronic energy + Delta-G solvation = -23020.447721 eV Core-core repulsion = 19844.135196 eV Total energy + Delta-G solvation = -3176.312525 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.48238 -39.49053 -37.59738 -36.18231 -34.46174 -33.11122 -32.72863 -29.83905 -29.58119 -26.46552 -25.35336 -24.55701 -23.99481 -21.86617 -21.55239 -20.89916 -20.28038 -19.14400 -18.19451 -17.34700 -16.60353 -16.25255 -15.89486 -15.72307 -15.59027 -15.17040 -15.12003 -15.01752 -14.41522 -14.05839 -13.74801 -13.45726 -13.36479 -13.19746 -12.99562 -12.81754 -12.70115 -12.28811 -12.23227 -12.16129 -11.99878 -11.92131 -11.90355 -11.73478 -11.72977 -11.41194 -11.17631 -11.05854 -10.92361 -10.53468 -9.88540 -8.97428 -7.96654 -5.23101 1.42334 1.45172 1.51319 1.63561 2.24116 2.53532 2.92327 3.35255 3.50389 3.68167 3.70975 3.83363 3.89730 3.93346 4.17105 4.20969 4.27406 4.40836 4.48948 4.51508 4.54889 4.60853 4.68683 4.78978 4.81303 4.88288 4.91988 4.94556 5.00257 5.08910 5.09182 5.15102 5.19033 5.23384 5.25455 5.30739 5.35015 5.44103 5.49004 5.50543 5.78632 6.25825 6.70961 7.33110 7.42322 8.07172 8.36991 9.25968 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.010602 B = 0.006511 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.302935 B = 4299.199707 C = 6321.969096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.111 4.111 4 H 0.088 0.912 5 C -0.151 4.151 6 C -0.188 4.188 7 H 0.152 0.848 8 C 0.538 3.462 9 O -0.579 6.579 10 N -0.699 5.699 11 C 0.171 3.829 12 C 0.148 3.852 13 N -0.727 5.727 14 C -0.248 4.248 15 H 0.059 0.941 16 C -0.065 4.065 17 N -0.961 5.961 18 Si 0.967 3.033 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.286 1.286 22 C -0.111 4.111 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.117 4.117 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.407 0.593 34 H 0.009 0.991 35 H 0.016 0.984 36 H 0.378 0.622 37 H 0.252 0.748 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.353 -14.887 10.238 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 C -0.130 4.130 4 H 0.106 0.894 5 C -0.188 4.188 6 C -0.209 4.209 7 H 0.170 0.830 8 C 0.326 3.674 9 O -0.459 6.459 10 N -0.350 5.350 11 C 0.085 3.915 12 C 0.020 3.980 13 N -0.370 5.370 14 C -0.380 4.380 15 H 0.077 0.923 16 C -0.258 4.258 17 N -0.611 5.611 18 Si 0.796 3.204 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.213 1.213 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.148 4.148 25 C -0.155 4.155 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.243 0.757 34 H 0.027 0.973 35 H 0.034 0.966 36 H 0.211 0.789 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.989 -14.189 10.583 17.952 hybrid contribution 0.072 1.026 -1.282 1.644 sum -2.917 -13.163 9.301 16.379 Atomic orbital electron populations 1.21748 0.94914 1.02414 1.01624 1.21152 0.96446 0.91502 1.03203 1.22458 0.90662 0.99689 1.00215 0.89373 1.23049 1.02555 1.02081 0.91139 1.22396 0.98286 0.98573 1.01663 0.83000 1.20100 0.82373 0.85703 0.79181 1.90625 1.55053 1.49552 1.50717 1.45908 1.06813 1.32650 1.49611 1.21164 0.95125 0.85129 0.90097 1.21189 0.96323 0.95008 0.85463 1.42218 1.61537 1.25658 1.07599 1.19479 1.25099 1.00117 0.93331 0.92272 1.25395 1.01206 1.01137 0.98040 1.69765 1.41587 1.35382 1.14378 0.85316 0.77484 0.79561 0.78019 1.20440 1.21343 1.21308 1.22324 0.98425 1.01423 0.92804 1.22376 0.93713 1.01964 0.97423 1.22545 0.99006 0.99943 0.93309 1.22616 0.91668 1.01680 0.99520 0.93033 0.90857 0.93301 0.90132 0.90472 0.91919 0.85385 0.75719 0.97266 0.96644 0.78938 0.93894 0.92085 0.92972 0.91133 0.89842 0.89543 0.90257 0.90958 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.87 71.98 0.71 -1.83 16 2 C -0.09 -1.55 6.22 30.60 0.19 -1.36 16 3 C -0.11 -2.93 5.25 -10.79 -0.06 -2.98 16 4 H 0.09 2.82 7.60 -2.39 -0.02 2.80 16 5 C -0.15 -4.37 9.88 30.60 0.30 -4.07 16 6 C -0.19 -5.25 5.91 -11.54 -0.07 -5.32 16 7 H 0.15 3.11 8.14 -2.38 -0.02 3.09 16 8 C 0.54 19.53 6.66 87.66 0.58 20.12 16 9 O -0.58 -25.72 13.55 -3.02 -0.04 -25.76 16 10 N -0.70 -23.13 4.56 -419.66 -1.91 -25.04 16 11 C 0.17 5.90 0.57 4.33 0.00 5.90 16 12 C 0.15 6.78 4.63 86.38 0.40 7.18 16 13 N -0.73 -38.82 5.27 -343.45 -1.81 -40.63 16 14 C -0.25 -14.79 9.99 84.03 0.84 -13.95 16 15 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 16 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 17 N -0.96 -58.71 13.06 21.65 0.28 -58.42 16 18 Si 0.97 47.89 29.55 68.60 2.03 49.92 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 22 C -0.11 -3.37 5.22 31.32 0.16 -3.21 16 23 C -0.12 -2.59 6.82 31.67 0.22 -2.38 16 24 C -0.11 -2.30 6.93 32.01 0.22 -2.07 16 25 C -0.12 -3.38 5.70 31.79 0.18 -3.20 16 26 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 1.23 7.88 -2.38 -0.02 1.21 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.13 2.94 8.03 -2.39 -0.02 2.92 16 33 H 0.41 11.51 8.23 -92.71 -0.76 10.74 16 34 H 0.01 0.49 6.61 -2.39 -0.02 0.47 16 35 H 0.02 0.72 8.00 -2.38 -0.02 0.70 16 36 H 0.38 20.45 7.20 -92.71 -0.67 19.78 16 37 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.06 1.92 6.99 -2.39 -0.02 1.90 16 39 H 0.05 1.76 7.67 -2.38 -0.02 1.74 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 44 H 0.07 2.07 7.70 -2.39 -0.02 2.05 16 45 H 0.07 2.21 7.76 -2.39 -0.02 2.19 16 Total: -1.00 -72.54 357.69 2.24 -70.30 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -0.46 Total: 40.20 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 4.15 Total: -10.55 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -3.44 Total: -124.09 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.04 Total: -25.76 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -72.54 2.24 -70.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698633943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.019 kcal (2) G-P(sol) polarization free energy of solvation -72.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds