Wall clock time and date at job start Tue Mar 31 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47045 * 2 1 4 4 H 1.08998 * 115.56488 * 29.29740 * 3 2 1 5 5 C 1.53001 * 117.49806 * 243.60275 * 3 2 1 6 6 C 1.52997 * 117.49516 * 174.98270 * 3 2 1 7 7 H 1.09001 * 117.50167 * 0.02562 * 6 3 2 8 8 C 1.50704 * 117.49724 * 214.97833 * 6 3 2 9 9 O 1.21277 * 120.00212 * 0.02562 * 8 6 3 10 10 N 1.34780 * 119.99947 * 180.02562 * 8 6 3 11 11 C 1.46490 * 120.00083 * 180.02562 * 10 8 6 12 12 C 1.53006 * 109.47536 * 175.52783 * 11 10 8 13 13 N 1.46497 * 110.01438 * 55.26910 * 12 11 10 14 14 C 1.36941 * 120.00001 * 61.55707 * 13 12 11 15 15 H 1.07997 * 119.99402 * 354.37265 * 14 13 12 16 16 C 1.38809 * 120.00058 * 174.37742 * 14 13 12 17 17 N 1.31616 * 119.99867 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99827 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47166 * 90.00146 * 18 16 14 20 20 H 1.48504 * 109.46897 * 209.99511 * 18 16 14 21 21 H 1.48490 * 109.47207 * 329.99579 * 18 16 14 22 22 C 1.54273 * 110.02721 * 293.88273 * 12 11 10 23 23 C 1.54964 * 104.15525 * 217.13254 * 22 12 11 24 24 C 1.54890 * 102.77794 * 37.88763 * 23 22 12 25 25 C 1.53873 * 110.03279 * 176.66525 * 12 11 10 26 26 H 1.09002 * 109.47501 * 300.00063 * 1 2 3 27 27 H 1.09004 * 109.47005 * 60.00009 * 1 2 3 28 28 H 1.09006 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47366 * 239.99614 * 2 1 3 30 30 H 1.09004 * 109.47005 * 119.99991 * 2 1 3 31 31 H 1.09002 * 117.49455 * 0.02562 * 5 3 2 32 32 H 1.09001 * 117.49265 * 145.01931 * 5 3 2 33 33 H 0.96998 * 120.00018 * 359.97438 * 10 8 6 34 34 H 1.08995 * 109.47636 * 295.52845 * 11 10 8 35 35 H 1.09006 * 109.47414 * 55.52885 * 11 10 8 36 36 H 0.97003 * 120.00284 * 241.55658 * 13 12 11 37 37 H 0.97006 * 120.00120 * 179.97438 * 17 16 14 38 38 H 1.08997 * 110.48531 * 335.77695 * 22 12 11 39 39 H 1.08997 * 110.48525 * 98.42377 * 22 12 11 40 40 H 1.08997 * 110.72266 * 279.57486 * 23 22 12 41 41 H 1.09001 * 110.76599 * 156.22224 * 23 22 12 42 42 H 1.09000 * 110.48587 * 203.40094 * 24 23 22 43 43 H 1.09003 * 110.48162 * 80.76184 * 24 23 22 44 44 H 1.09003 * 110.02868 * 238.56693 * 25 12 11 45 45 H 1.08992 * 110.03736 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1718 0.4812 5 6 2.8443 1.9074 -1.2157 6 6 3.5501 1.6578 0.1187 7 1 4.1802 0.7718 0.1963 8 6 4.0226 2.8620 0.8919 9 8 3.2154 3.6165 1.3920 10 7 5.3421 3.1005 1.0275 11 6 5.8015 4.2707 1.7795 12 6 7.3282 4.2476 1.8767 13 7 7.9147 4.1621 0.5370 14 6 7.6907 5.1602 -0.3735 15 1 7.0096 5.9641 -0.1366 16 6 8.3391 5.1386 -1.6006 17 7 9.1695 4.1590 -1.8890 18 14 8.0341 6.5005 -2.8422 19 1 9.0121 7.5966 -2.6248 20 1 8.1923 5.9616 -4.2170 21 1 6.6557 7.0259 -2.6721 22 6 7.7851 3.0471 2.7312 23 6 9.0007 3.5881 3.5255 24 6 8.5746 5.0399 3.8572 25 6 7.8302 5.5141 2.5921 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.0098 1.1857 -2.0156 32 1 2.7216 2.9426 -1.5343 33 1 5.9877 2.4969 0.6279 34 1 5.4838 5.1792 1.2678 35 1 5.3733 4.2497 2.7818 36 1 8.4616 3.3985 0.2947 37 1 9.6223 4.1436 -2.7467 38 1 6.9914 2.7392 3.4117 39 1 8.0849 2.2164 2.0924 40 1 9.8990 3.5808 2.9082 41 1 9.1532 3.0122 4.4383 42 1 9.4506 5.6622 4.0402 43 1 7.9083 5.0542 4.7198 44 1 8.5108 6.0647 1.9427 45 1 6.9862 6.1455 2.8696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698805276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:00 Heat of formation + Delta-G solvation = -26.545496 kcal Electronic energy + Delta-G solvation = -22640.213050 eV Core-core repulsion = 19464.539314 eV Total energy + Delta-G solvation = -3175.673736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.71287 -38.41387 -36.74685 -34.03114 -33.26896 -32.08014 -30.61869 -28.29585 -27.96598 -25.19455 -23.92566 -23.45156 -22.60419 -20.55454 -20.28539 -19.54675 -18.51096 -17.15762 -16.76340 -15.84856 -15.14411 -14.86492 -14.81991 -14.48932 -14.18521 -14.06907 -13.67698 -13.21895 -13.10470 -12.60010 -12.53254 -12.31537 -12.11274 -11.84920 -11.55809 -11.36969 -11.06976 -11.00703 -10.83151 -10.68603 -10.58038 -10.50389 -10.36714 -10.17248 -10.07457 -9.95932 -9.84072 -9.65570 -9.35646 -8.92919 -8.39366 -7.02610 -5.81936 -3.11094 2.92540 3.40661 3.47425 3.48378 3.62210 4.03120 4.55545 4.71572 4.86148 4.94467 5.10446 5.12647 5.16641 5.24278 5.26087 5.40156 5.42156 5.56489 5.67789 5.68311 5.76614 5.83277 5.86258 5.96032 5.97935 5.99515 6.05638 6.10204 6.11649 6.16134 6.26053 6.33970 6.38247 6.44115 6.58204 6.63745 6.73919 6.84319 7.03120 7.16115 7.71197 8.12834 8.36890 8.75788 9.48560 10.02629 10.38374 11.40086 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.005312 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.272073 B = 5270.009275 C = 6754.241849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.123 4.123 4 H 0.115 0.885 5 C -0.147 4.147 6 C -0.185 4.185 7 H 0.119 0.881 8 C 0.537 3.463 9 O -0.561 6.561 10 N -0.696 5.696 11 C 0.119 3.881 12 C 0.189 3.811 13 N -0.712 5.712 14 C -0.233 4.233 15 H 0.069 0.931 16 C -0.008 4.008 17 N -0.931 5.931 18 Si 0.901 3.099 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.130 4.130 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.404 0.596 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.384 0.616 37 H 0.254 0.746 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.620 -7.758 7.006 13.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.141 4.141 4 H 0.133 0.867 5 C -0.184 4.184 6 C -0.207 4.207 7 H 0.137 0.863 8 C 0.323 3.677 9 O -0.440 6.440 10 N -0.345 5.345 11 C -0.008 4.008 12 C 0.097 3.903 13 N -0.353 5.353 14 C -0.364 4.364 15 H 0.087 0.913 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.732 3.268 19 H -0.217 1.217 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.158 4.158 25 C -0.170 4.170 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.239 0.761 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.218 0.782 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.191 -7.058 7.251 13.670 hybrid contribution 0.551 0.362 -1.134 1.311 sum -8.641 -6.696 6.118 12.527 Atomic orbital electron populations 1.21738 0.95405 1.01367 1.02100 1.21141 0.96041 0.93950 1.02006 1.22436 0.91794 0.98290 1.01620 0.86655 1.23062 1.01870 1.03167 0.90347 1.22281 0.97017 0.99265 1.02096 0.86273 1.19563 0.82662 0.85500 0.79982 1.90632 1.54262 1.49282 1.49869 1.45703 1.06280 1.28311 1.54195 1.21935 0.96428 0.88099 0.94293 1.20451 0.89801 0.93090 0.86998 1.42543 1.59998 1.25264 1.07544 1.19094 1.20180 1.02461 0.94645 0.91308 1.24688 0.99188 0.98275 0.98260 1.69651 1.32266 1.32674 1.23320 0.86284 0.77702 0.81719 0.81087 1.21750 1.21865 1.20815 1.22587 0.97508 0.97794 0.98146 1.22428 0.98470 0.95831 0.98946 1.22305 0.99390 0.96365 0.97759 1.22662 0.99798 0.98441 0.96117 0.92575 0.92566 0.92820 0.91729 0.91581 0.88011 0.88318 0.76058 0.92070 0.92816 0.78164 0.93573 0.91852 0.91566 0.91266 0.92623 0.92446 0.92605 0.89928 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.87 37.16 0.37 -0.93 16 2 C -0.09 -0.92 6.22 -26.73 -0.17 -1.09 16 3 C -0.12 -1.54 5.25 -90.62 -0.48 -2.02 16 4 H 0.12 1.64 7.60 -51.93 -0.39 1.24 16 5 C -0.15 -1.93 9.88 -26.73 -0.26 -2.19 16 6 C -0.19 -2.62 5.91 -91.77 -0.54 -3.17 16 7 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 8 C 0.54 9.64 7.61 -10.98 -0.08 9.55 16 9 O -0.56 -11.81 16.26 5.56 0.09 -11.72 16 10 N -0.70 -12.40 5.23 -60.30 -0.32 -12.71 16 11 C 0.12 2.22 4.04 -4.04 -0.02 2.20 16 12 C 0.19 3.45 0.68 -130.70 -0.09 3.36 16 13 N -0.71 -15.97 4.53 -46.19 -0.21 -16.18 16 14 C -0.23 -6.00 8.52 -15.06 -0.13 -6.13 16 15 H 0.07 1.80 7.27 -52.49 -0.38 1.42 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 17 N -0.93 -26.63 13.07 55.49 0.73 -25.91 16 18 Si 0.90 22.03 29.55 -169.99 -5.02 17.00 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.12 -1.89 5.72 -25.03 -0.14 -2.04 16 23 C -0.12 -1.73 6.91 -24.70 -0.17 -1.90 16 24 C -0.12 -1.76 6.83 -25.07 -0.17 -1.94 16 25 C -0.13 -2.29 5.93 -25.62 -0.15 -2.44 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.10 1.13 8.03 -51.93 -0.42 0.71 16 32 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.40 6.99 7.99 -40.82 -0.33 6.66 16 34 H 0.06 1.31 7.46 -51.93 -0.39 0.92 16 35 H 0.05 0.96 8.05 -51.93 -0.42 0.55 16 36 H 0.38 9.20 7.44 -40.82 -0.30 8.90 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 38 H 0.06 0.91 7.79 -51.93 -0.40 0.50 16 39 H 0.07 1.03 7.72 -51.93 -0.40 0.63 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.68 7.36 -51.93 -0.38 1.30 16 45 H 0.05 0.86 7.67 -51.93 -0.40 0.46 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -29.44 360.81 -9.41 -38.85 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -7.99 Total: 14.26 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -2.13 Total: -9.04 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.20 Total: -54.80 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.44 -9.41 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698805276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.306 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds