Wall clock time and date at job start Tue Mar 31 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47045 * 2 1 4 4 H 1.08998 * 115.56488 * 29.29740 * 3 2 1 5 5 C 1.53001 * 117.49806 * 243.60275 * 3 2 1 6 6 C 1.52997 * 117.49516 * 174.98270 * 3 2 1 7 7 H 1.09001 * 117.50167 * 0.02562 * 6 3 2 8 8 C 1.50704 * 117.49724 * 214.97833 * 6 3 2 9 9 O 1.21277 * 120.00212 * 0.02562 * 8 6 3 10 10 N 1.34780 * 119.99947 * 180.02562 * 8 6 3 11 11 C 1.46490 * 120.00083 * 180.02562 * 10 8 6 12 12 C 1.53006 * 109.47536 * 175.52783 * 11 10 8 13 13 N 1.46497 * 110.01438 * 55.26910 * 12 11 10 14 14 C 1.36941 * 120.00001 * 61.55707 * 13 12 11 15 15 H 1.07997 * 119.99402 * 354.37265 * 14 13 12 16 16 C 1.38809 * 120.00058 * 174.37742 * 14 13 12 17 17 N 1.31616 * 119.99867 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99827 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47166 * 90.00146 * 18 16 14 20 20 H 1.48504 * 109.46897 * 209.99511 * 18 16 14 21 21 H 1.48490 * 109.47207 * 329.99579 * 18 16 14 22 22 C 1.54273 * 110.02721 * 293.88273 * 12 11 10 23 23 C 1.54964 * 104.15525 * 217.13254 * 22 12 11 24 24 C 1.54890 * 102.77794 * 37.88763 * 23 22 12 25 25 C 1.53873 * 110.03279 * 176.66525 * 12 11 10 26 26 H 1.09002 * 109.47501 * 300.00063 * 1 2 3 27 27 H 1.09004 * 109.47005 * 60.00009 * 1 2 3 28 28 H 1.09006 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47366 * 239.99614 * 2 1 3 30 30 H 1.09004 * 109.47005 * 119.99991 * 2 1 3 31 31 H 1.09002 * 117.49455 * 0.02562 * 5 3 2 32 32 H 1.09001 * 117.49265 * 145.01931 * 5 3 2 33 33 H 0.96998 * 120.00018 * 359.97438 * 10 8 6 34 34 H 1.08995 * 109.47636 * 295.52845 * 11 10 8 35 35 H 1.09006 * 109.47414 * 55.52885 * 11 10 8 36 36 H 0.97003 * 120.00284 * 241.55658 * 13 12 11 37 37 H 0.97006 * 120.00120 * 179.97438 * 17 16 14 38 38 H 1.08997 * 110.48531 * 335.77695 * 22 12 11 39 39 H 1.08997 * 110.48525 * 98.42377 * 22 12 11 40 40 H 1.08997 * 110.72266 * 279.57486 * 23 22 12 41 41 H 1.09001 * 110.76599 * 156.22224 * 23 22 12 42 42 H 1.09000 * 110.48587 * 203.40094 * 24 23 22 43 43 H 1.09003 * 110.48162 * 80.76184 * 24 23 22 44 44 H 1.09003 * 110.02868 * 238.56693 * 25 12 11 45 45 H 1.08992 * 110.03736 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1718 0.4812 5 6 2.8443 1.9074 -1.2157 6 6 3.5501 1.6578 0.1187 7 1 4.1802 0.7718 0.1963 8 6 4.0226 2.8620 0.8919 9 8 3.2154 3.6165 1.3920 10 7 5.3421 3.1005 1.0275 11 6 5.8015 4.2707 1.7795 12 6 7.3282 4.2476 1.8767 13 7 7.9147 4.1621 0.5370 14 6 7.6907 5.1602 -0.3735 15 1 7.0096 5.9641 -0.1366 16 6 8.3391 5.1386 -1.6006 17 7 9.1695 4.1590 -1.8890 18 14 8.0341 6.5005 -2.8422 19 1 9.0121 7.5966 -2.6248 20 1 8.1923 5.9616 -4.2170 21 1 6.6557 7.0259 -2.6721 22 6 7.7851 3.0471 2.7312 23 6 9.0007 3.5881 3.5255 24 6 8.5746 5.0399 3.8572 25 6 7.8302 5.5141 2.5921 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.0098 1.1857 -2.0156 32 1 2.7216 2.9426 -1.5343 33 1 5.9877 2.4969 0.6279 34 1 5.4838 5.1792 1.2678 35 1 5.3733 4.2497 2.7818 36 1 8.4616 3.3985 0.2947 37 1 9.6223 4.1436 -2.7467 38 1 6.9914 2.7392 3.4117 39 1 8.0849 2.2164 2.0924 40 1 9.8990 3.5808 2.9082 41 1 9.1532 3.0122 4.4383 42 1 9.4506 5.6622 4.0402 43 1 7.9083 5.0542 4.7198 44 1 8.5108 6.0647 1.9427 45 1 6.9862 6.1455 2.8696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698805276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:59 Heat of formation + Delta-G solvation = -43.753052 kcal Electronic energy + Delta-G solvation = -22640.959225 eV Core-core repulsion = 19464.539314 eV Total energy + Delta-G solvation = -3176.419911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10601 -39.80530 -37.93039 -35.56002 -35.08657 -32.93415 -32.37277 -29.66248 -29.54822 -26.65302 -25.34341 -24.69067 -23.93733 -21.74088 -21.34321 -20.92671 -20.01932 -19.01507 -18.16630 -17.36806 -16.68506 -16.18545 -16.08029 -15.89836 -15.49316 -15.27048 -15.11712 -14.87342 -14.48490 -14.05138 -13.56774 -13.47230 -13.29727 -13.24483 -12.98209 -12.88366 -12.64932 -12.29715 -12.19216 -12.06954 -11.91522 -11.85267 -11.80727 -11.55328 -11.43685 -11.33424 -11.21823 -11.01970 -10.94125 -10.69831 -9.92707 -8.96790 -7.91935 -5.17811 1.43496 1.45722 1.51866 1.55275 2.28721 2.56070 2.90035 3.38844 3.68529 3.74165 3.80441 3.84572 3.88736 3.95444 4.13774 4.21559 4.28169 4.42658 4.49964 4.55155 4.59542 4.67817 4.74758 4.77963 4.84474 4.93027 4.96475 4.99061 5.01653 5.13229 5.16393 5.19204 5.23513 5.26731 5.31309 5.40150 5.44328 5.51029 5.56774 5.63592 5.69883 6.32061 6.68008 7.31477 7.39314 8.12398 8.37927 9.30429 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.005312 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.272073 B = 5270.009275 C = 6754.241849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.111 4.111 4 H 0.094 0.906 5 C -0.147 4.147 6 C -0.195 4.195 7 H 0.145 0.855 8 C 0.531 3.469 9 O -0.597 6.597 10 N -0.694 5.694 11 C 0.126 3.874 12 C 0.185 3.815 13 N -0.714 5.714 14 C -0.217 4.217 15 H 0.060 0.940 16 C -0.062 4.062 17 N -0.960 5.960 18 Si 0.951 3.049 19 H -0.291 1.291 20 H -0.296 1.296 21 H -0.282 1.282 22 C -0.115 4.115 23 C -0.115 4.115 24 C -0.113 4.113 25 C -0.131 4.131 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.408 0.592 34 H 0.027 0.973 35 H 0.065 0.935 36 H 0.376 0.624 37 H 0.249 0.751 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.143 -9.320 8.077 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.129 4.129 4 H 0.112 0.888 5 C -0.184 4.184 6 C -0.216 4.216 7 H 0.163 0.837 8 C 0.318 3.682 9 O -0.480 6.480 10 N -0.343 5.343 11 C 0.000 4.000 12 C 0.094 3.906 13 N -0.355 5.355 14 C -0.349 4.349 15 H 0.078 0.922 16 C -0.254 4.254 17 N -0.610 5.610 18 Si 0.782 3.218 19 H -0.218 1.218 20 H -0.222 1.222 21 H -0.208 1.208 22 C -0.153 4.153 23 C -0.152 4.152 24 C -0.151 4.151 25 C -0.171 4.171 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.096 0.904 33 H 0.244 0.756 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.210 0.790 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.725 -8.616 8.352 15.445 hybrid contribution 0.644 0.899 -1.393 1.778 sum -9.082 -7.717 6.959 13.800 Atomic orbital electron populations 1.21742 0.94673 1.02393 1.01800 1.21168 0.96634 0.91768 1.03082 1.22479 0.90351 0.99706 1.00403 0.88777 1.23149 1.01649 1.02801 0.90816 1.22346 0.98540 0.98370 1.02363 0.83740 1.20256 0.82175 0.86177 0.79545 1.90607 1.55024 1.50896 1.51472 1.45721 1.06586 1.27908 1.54038 1.21787 0.96549 0.87216 0.94486 1.20691 0.89131 0.95158 0.85587 1.42594 1.59896 1.24134 1.08842 1.19215 1.18469 1.02264 0.94931 0.92174 1.25218 1.00109 1.00163 0.99952 1.69757 1.33735 1.34147 1.23402 0.85482 0.77309 0.79777 0.79247 1.21800 1.22236 1.20822 1.22545 0.98522 0.96257 0.97948 1.22415 0.97064 0.96002 0.99753 1.22291 0.99708 0.96402 0.96687 1.22606 0.99576 0.97808 0.97155 0.93193 0.92652 0.91110 0.90213 0.90866 0.85395 0.90422 0.75636 0.95470 0.91670 0.79021 0.94226 0.89939 0.91625 0.93004 0.89529 0.91740 0.90255 0.93218 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.87 71.98 0.71 -1.56 16 2 C -0.09 -1.52 6.22 30.59 0.19 -1.33 16 3 C -0.11 -2.65 5.25 -10.79 -0.06 -2.70 16 4 H 0.09 2.68 7.60 -2.39 -0.02 2.66 16 5 C -0.15 -3.68 9.88 30.59 0.30 -3.37 16 6 C -0.20 -5.28 5.91 -11.54 -0.07 -5.35 16 7 H 0.14 3.15 8.14 -2.39 -0.02 3.13 16 8 C 0.53 18.97 7.61 87.66 0.67 19.64 16 9 O -0.60 -25.55 16.26 -3.02 -0.05 -25.60 16 10 N -0.69 -24.53 5.23 -463.06 -2.42 -26.95 16 11 C 0.13 4.71 4.04 86.38 0.35 5.06 16 12 C 0.19 6.67 0.68 4.33 0.00 6.67 16 13 N -0.71 -32.30 4.53 -300.06 -1.36 -33.66 16 14 C -0.22 -11.35 8.52 84.03 0.72 -10.64 16 15 H 0.06 3.23 7.27 -2.91 -0.02 3.20 16 16 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 17 N -0.96 -55.64 13.07 21.65 0.28 -55.36 16 18 Si 0.95 46.02 29.55 68.60 2.03 48.05 16 19 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 21 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 22 C -0.11 -3.31 5.72 31.70 0.18 -3.13 16 23 C -0.11 -3.03 6.91 31.91 0.22 -2.81 16 24 C -0.11 -3.05 6.83 31.67 0.22 -2.83 16 25 C -0.13 -4.57 5.93 31.32 0.19 -4.38 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.08 1.15 7.87 -2.39 -0.02 1.13 16 30 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.13 2.52 8.03 -2.39 -0.02 2.50 16 32 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.41 13.86 7.99 -92.71 -0.74 13.12 16 34 H 0.03 1.19 7.46 -2.39 -0.02 1.17 16 35 H 0.07 2.29 8.05 -2.38 -0.02 2.27 16 36 H 0.38 18.18 7.44 -92.71 -0.69 17.49 16 37 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 38 H 0.08 2.10 7.79 -2.39 -0.02 2.08 16 39 H 0.07 1.92 7.72 -2.39 -0.02 1.91 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 2.05 7.36 -2.39 -0.02 2.03 16 45 H 0.05 1.84 7.67 -2.39 -0.02 1.83 16 Total: -1.00 -64.43 360.81 2.10 -62.33 By element: Atomic # 1 Polarization: 41.32 SS G_CDS: -0.46 Total: 40.86 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 4.08 Total: -9.67 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -3.50 Total: -115.97 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -64.43 2.10 -62.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698805276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.576 kcal (2) G-P(sol) polarization free energy of solvation -64.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds