Wall clock time and date at job start Tue Mar 31 2020 01:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46827 * 2 1 4 4 C 1.53000 * 109.47210 * 120.00037 * 2 1 3 5 5 H 1.08999 * 109.46802 * 299.99973 * 4 2 1 6 6 C 1.52996 * 109.46775 * 180.02562 * 4 2 1 7 7 N 1.46509 * 109.47224 * 185.00076 * 6 4 2 8 8 C 1.34772 * 120.00092 * 180.02562 * 7 6 4 9 9 O 1.21274 * 120.00300 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99744 * 180.02562 * 8 7 6 11 11 H 1.09003 * 115.56287 * 34.33560 * 10 8 7 12 12 C 1.53121 * 117.51041 * 248.60575 * 10 8 7 13 13 C 1.52456 * 59.85775 * 252.55108 * 12 10 8 14 14 C 1.53257 * 128.58790 * 117.59853 * 13 12 10 15 15 C 1.53886 * 86.88348 * 114.94781 * 14 13 12 16 16 C 1.53257 * 128.58754 * 242.40149 * 13 12 10 17 17 N 1.46493 * 109.47099 * 60.00345 * 4 2 1 18 18 C 1.36945 * 119.99892 * 274.99565 * 17 4 2 19 19 H 1.08000 * 119.99422 * 359.72792 * 18 17 4 20 20 C 1.38811 * 120.00031 * 179.72716 * 18 17 4 21 21 N 1.31616 * 119.99707 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47112 * 89.99774 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48499 * 109.47134 * 329.99663 * 22 20 18 26 26 H 1.08998 * 109.46943 * 299.99513 * 1 2 3 27 27 H 1.08990 * 109.47675 * 60.00274 * 1 2 3 28 28 H 1.09003 * 109.46767 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46891 * 240.00075 * 2 1 3 30 30 H 1.09004 * 109.46962 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46845 * 299.99748 * 3 2 1 32 32 H 1.08993 * 109.47058 * 60.00041 * 3 2 1 33 33 H 1.08996 * 109.47503 * 304.99684 * 6 4 2 34 34 H 1.08997 * 109.47791 * 65.00231 * 6 4 2 35 35 H 0.97003 * 119.99473 * 359.97438 * 7 6 4 36 36 H 1.09008 * 117.51394 * 359.97438 * 12 10 8 37 37 H 1.09005 * 117.51553 * 145.06282 * 12 10 8 38 38 H 1.09003 * 113.64894 * 229.44461 * 14 13 12 39 39 H 1.08995 * 113.64516 * 0.45071 * 14 13 12 40 40 H 1.09000 * 113.59180 * 270.39240 * 15 14 13 41 41 H 1.09002 * 113.66070 * 139.58595 * 15 14 13 42 42 H 1.09006 * 113.64113 * 359.54912 * 16 13 12 43 43 H 1.09001 * 113.64683 * 130.46232 * 16 13 12 44 44 H 0.97000 * 120.00738 * 94.73029 * 17 4 2 45 45 H 0.97004 * 119.99151 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2494 7 7 4.0585 -1.5129 2.3809 8 6 5.3836 -1.6532 2.5831 9 8 6.1716 -1.1241 1.8282 10 6 5.8860 -2.4687 3.7466 11 1 5.2778 -3.3333 4.0125 12 6 6.5877 -1.7209 4.8837 13 6 7.3957 -2.5871 3.9239 14 6 8.5076 -2.1626 2.9585 15 6 9.4599 -3.0193 3.8113 16 6 8.2265 -3.8372 4.2331 17 7 1.5518 -2.1024 1.2492 18 6 0.3102 -2.3898 1.7505 19 1 -0.3071 -1.5987 2.1498 20 6 -0.1547 -3.6977 1.7452 21 7 0.5979 -4.6617 1.2590 22 14 -1.8486 -4.0895 2.4284 23 1 -2.8558 -3.9897 1.3417 24 1 -1.8525 -5.4674 2.9820 25 1 -2.1841 -3.1228 3.5045 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.9337 -1.1547 0.3181 34 1 3.9330 0.3032 1.3393 35 1 3.4282 -1.9358 2.9848 36 1 6.6862 -0.6394 4.7899 37 1 6.4411 -2.0938 5.8975 38 1 8.3725 -2.5375 1.9439 39 1 8.7313 -1.0963 2.9910 40 1 9.9219 -2.4716 4.6328 41 1 10.1807 -3.5883 3.2242 42 1 8.2248 -4.1134 5.2876 43 1 8.0120 -4.6787 3.5744 44 1 2.1063 -2.8130 0.8906 45 1 0.2731 -5.5757 1.2557 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698973285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:43 Heat of formation + Delta-G solvation = 6.121341 kcal Electronic energy + Delta-G solvation = -22434.291149 eV Core-core repulsion = 19260.033954 eV Total energy + Delta-G solvation = -3174.257195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.15091 -38.41599 -37.06949 -33.74227 -33.56595 -33.12400 -30.38819 -28.16132 -26.15209 -25.66110 -24.49850 -23.16576 -23.03203 -21.54515 -19.96658 -19.22251 -18.32372 -17.31312 -16.65147 -15.85166 -15.26814 -15.21924 -14.86910 -14.52493 -14.13257 -13.92452 -13.42267 -13.30861 -12.90616 -12.60414 -12.39604 -12.09030 -12.03598 -11.93469 -11.62902 -11.55105 -11.44046 -11.03590 -10.95268 -10.84473 -10.63690 -10.33309 -10.28702 -10.11399 -10.05661 -9.95464 -9.71907 -9.55534 -9.33408 -8.92313 -8.53285 -7.03746 -5.83013 -3.12129 2.83831 3.38363 3.44497 3.45875 3.54418 3.84104 4.46886 4.53073 4.63824 4.80346 4.83082 4.90710 5.32727 5.34202 5.35283 5.42272 5.54846 5.60176 5.63664 5.65652 5.71849 5.76603 5.81561 5.85562 5.91959 5.99332 6.03804 6.14634 6.19578 6.25208 6.31437 6.37831 6.41197 6.46848 6.54512 6.63460 6.69991 6.98704 7.07947 7.29259 7.65512 8.03660 8.34411 8.67294 9.46372 10.01504 10.37465 11.38838 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.004463 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.476079 B = 6272.509365 C = 7601.748094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.115 3.885 7 N -0.709 5.709 8 C 0.540 3.460 9 O -0.552 6.552 10 C -0.175 4.175 11 H 0.124 0.876 12 C -0.123 4.123 13 C -0.128 4.128 14 C -0.080 4.080 15 C -0.143 4.143 16 C -0.099 4.099 17 N -0.721 5.721 18 C -0.237 4.237 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.929 5.929 22 Si 0.902 3.098 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.040 0.960 27 H 0.031 0.969 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.410 0.590 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.740 6.159 5.270 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.010 4.010 7 N -0.360 5.360 8 C 0.326 3.674 9 O -0.431 6.431 10 C -0.197 4.197 11 H 0.142 0.858 12 C -0.161 4.161 13 C -0.128 4.128 14 C -0.117 4.117 15 C -0.180 4.180 16 C -0.137 4.137 17 N -0.362 5.362 18 C -0.368 4.368 19 H 0.091 0.909 20 C -0.207 4.207 21 N -0.577 5.577 22 Si 0.733 3.267 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.246 0.754 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.107 6.516 4.817 14.569 hybrid contribution -1.405 -0.767 0.411 1.653 sum 10.702 5.749 5.229 13.226 Atomic orbital electron populations 1.21820 0.94965 1.03893 0.98984 1.21734 0.96895 0.94412 1.00093 1.21939 1.00483 0.97343 1.00895 1.20540 0.89421 0.88150 0.95928 0.92917 1.21709 0.95564 0.94758 0.88929 1.45941 1.06604 1.52709 1.30712 1.19553 0.82433 0.80335 0.85081 1.90635 1.55660 1.49301 1.47488 1.22184 0.96646 1.02655 0.98171 0.85820 1.22758 1.00707 0.98505 0.94114 1.22236 0.89865 0.99387 1.01329 1.22292 0.92154 0.99831 0.97459 1.22815 0.96146 0.98911 1.00124 1.22503 0.94594 0.95277 1.01287 1.42464 1.18176 1.01924 1.73684 1.19201 0.92827 0.92433 1.32303 0.90938 1.24723 0.98268 0.95889 1.01802 1.69665 1.36822 0.99949 1.51297 0.86270 0.84451 0.77364 0.78581 1.21760 1.21875 1.20771 0.94070 0.94997 0.89510 0.91929 0.93060 0.93585 0.93210 0.92066 0.91774 0.75360 0.88285 0.87843 0.89447 0.91480 0.90358 0.91426 0.91407 0.89564 0.78098 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.27 37.16 0.31 -2.20 16 2 C -0.11 -1.88 2.69 -90.62 -0.24 -2.12 16 3 C -0.15 -2.11 8.84 37.16 0.33 -1.79 16 4 C 0.17 3.14 2.18 -67.94 -0.15 2.99 16 5 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 6 C 0.11 1.98 4.73 -4.04 -0.02 1.96 16 7 N -0.71 -12.04 5.39 -60.29 -0.32 -12.36 16 8 C 0.54 9.14 7.61 -10.99 -0.08 9.06 16 9 O -0.55 -10.67 15.14 5.56 0.08 -10.58 16 10 C -0.18 -2.44 6.19 -91.98 -0.57 -3.01 16 11 H 0.12 1.65 8.14 -51.93 -0.42 1.22 16 12 C -0.12 -1.42 10.23 -26.95 -0.28 -1.70 16 13 C -0.13 -1.59 2.88 -154.80 -0.45 -2.03 16 14 C -0.08 -1.01 6.47 -26.14 -0.17 -1.18 16 15 C -0.14 -1.40 8.08 -25.81 -0.21 -1.61 16 16 C -0.10 -1.03 8.10 -26.14 -0.21 -1.25 16 17 N -0.72 -16.34 4.44 -53.43 -0.24 -16.58 16 18 C -0.24 -5.95 7.56 -15.06 -0.11 -6.07 16 19 H 0.07 1.79 7.41 -52.49 -0.39 1.40 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -26.62 13.06 55.49 0.72 -25.90 16 22 Si 0.90 21.37 29.55 -169.99 -5.02 16.35 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 1.85 6.01 -51.93 -0.31 1.54 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.70 6.55 -51.93 -0.34 0.36 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.05 6.71 -51.93 -0.35 0.70 16 35 H 0.41 7.06 8.14 -40.82 -0.33 6.73 16 36 H 0.10 1.16 8.14 -51.92 -0.42 0.74 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.39 9.62 7.80 -40.82 -0.32 9.30 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 359.27 15.07 5.41 5.41 Total: -1.00 -28.46 359.27 -9.24 -37.70 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -7.93 Total: 15.27 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.95 Total: -9.31 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.16 Total: -54.83 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.46 -9.24 -37.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698973285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.822 kcal (2) G-P(sol) polarization free energy of solvation -28.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds