Wall clock time and date at job start Tue Mar 31 2020 01:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46827 * 2 1 4 4 C 1.53000 * 109.47210 * 120.00037 * 2 1 3 5 5 H 1.08999 * 109.46802 * 299.99973 * 4 2 1 6 6 C 1.52996 * 109.46775 * 180.02562 * 4 2 1 7 7 N 1.46509 * 109.47224 * 185.00076 * 6 4 2 8 8 C 1.34772 * 120.00092 * 180.02562 * 7 6 4 9 9 O 1.21274 * 120.00300 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99744 * 180.02562 * 8 7 6 11 11 H 1.09003 * 115.56287 * 34.33560 * 10 8 7 12 12 C 1.53121 * 117.51041 * 248.60575 * 10 8 7 13 13 C 1.52456 * 59.85775 * 252.55108 * 12 10 8 14 14 C 1.53257 * 128.58790 * 117.59853 * 13 12 10 15 15 C 1.53886 * 86.88348 * 114.94781 * 14 13 12 16 16 C 1.53257 * 128.58754 * 242.40149 * 13 12 10 17 17 N 1.46493 * 109.47099 * 60.00345 * 4 2 1 18 18 C 1.36945 * 119.99892 * 274.99565 * 17 4 2 19 19 H 1.08000 * 119.99422 * 359.72792 * 18 17 4 20 20 C 1.38811 * 120.00031 * 179.72716 * 18 17 4 21 21 N 1.31616 * 119.99707 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47112 * 89.99774 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48499 * 109.47134 * 329.99663 * 22 20 18 26 26 H 1.08998 * 109.46943 * 299.99513 * 1 2 3 27 27 H 1.08990 * 109.47675 * 60.00274 * 1 2 3 28 28 H 1.09003 * 109.46767 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46891 * 240.00075 * 2 1 3 30 30 H 1.09004 * 109.46962 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46845 * 299.99748 * 3 2 1 32 32 H 1.08993 * 109.47058 * 60.00041 * 3 2 1 33 33 H 1.08996 * 109.47503 * 304.99684 * 6 4 2 34 34 H 1.08997 * 109.47791 * 65.00231 * 6 4 2 35 35 H 0.97003 * 119.99473 * 359.97438 * 7 6 4 36 36 H 1.09008 * 117.51394 * 359.97438 * 12 10 8 37 37 H 1.09005 * 117.51553 * 145.06282 * 12 10 8 38 38 H 1.09003 * 113.64894 * 229.44461 * 14 13 12 39 39 H 1.08995 * 113.64516 * 0.45071 * 14 13 12 40 40 H 1.09000 * 113.59180 * 270.39240 * 15 14 13 41 41 H 1.09002 * 113.66070 * 139.58595 * 15 14 13 42 42 H 1.09006 * 113.64113 * 359.54912 * 16 13 12 43 43 H 1.09001 * 113.64683 * 130.46232 * 16 13 12 44 44 H 0.97000 * 120.00738 * 94.73029 * 17 4 2 45 45 H 0.97004 * 119.99151 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2494 7 7 4.0585 -1.5129 2.3809 8 6 5.3836 -1.6532 2.5831 9 8 6.1716 -1.1241 1.8282 10 6 5.8860 -2.4687 3.7466 11 1 5.2778 -3.3333 4.0125 12 6 6.5877 -1.7209 4.8837 13 6 7.3957 -2.5871 3.9239 14 6 8.5076 -2.1626 2.9585 15 6 9.4599 -3.0193 3.8113 16 6 8.2265 -3.8372 4.2331 17 7 1.5518 -2.1024 1.2492 18 6 0.3102 -2.3898 1.7505 19 1 -0.3071 -1.5987 2.1498 20 6 -0.1547 -3.6977 1.7452 21 7 0.5979 -4.6617 1.2590 22 14 -1.8486 -4.0895 2.4284 23 1 -2.8558 -3.9897 1.3417 24 1 -1.8525 -5.4674 2.9820 25 1 -2.1841 -3.1228 3.5045 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.9337 -1.1547 0.3181 34 1 3.9330 0.3032 1.3393 35 1 3.4282 -1.9358 2.9848 36 1 6.6862 -0.6394 4.7899 37 1 6.4411 -2.0938 5.8975 38 1 8.3725 -2.5375 1.9439 39 1 8.7313 -1.0963 2.9910 40 1 9.9219 -2.4716 4.6328 41 1 10.1807 -3.5883 3.2242 42 1 8.2248 -4.1134 5.2876 43 1 8.0120 -4.6787 3.5744 44 1 2.1063 -2.8130 0.8906 45 1 0.2731 -5.5757 1.2557 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698973285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:43 Heat of formation + Delta-G solvation = -10.218286 kcal Electronic energy + Delta-G solvation = -22434.999688 eV Core-core repulsion = 19260.033954 eV Total energy + Delta-G solvation = -3174.965735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.30423 -39.65102 -38.53475 -35.20216 -34.92004 -34.54848 -32.17077 -29.71269 -27.50831 -26.57390 -26.06636 -24.68555 -23.91616 -22.96803 -21.32496 -20.63313 -19.40684 -19.05009 -17.98749 -17.15973 -16.88137 -16.21871 -16.05976 -15.86342 -15.58152 -15.45313 -15.04259 -14.84694 -14.30759 -13.90115 -13.62323 -13.44185 -13.21230 -12.96680 -12.90423 -12.83695 -12.71967 -12.47553 -12.42468 -12.30142 -12.26476 -11.98671 -11.77481 -11.45735 -11.29642 -11.25728 -11.00940 -10.87231 -10.76871 -10.53866 -9.95674 -8.96324 -7.87708 -5.14980 1.49896 1.51364 1.56550 1.58300 2.27005 2.59729 2.80126 3.43796 3.48562 3.72032 3.81105 3.86069 3.91336 3.93649 3.98571 4.19046 4.29488 4.31872 4.45133 4.53114 4.62032 4.67059 4.77123 4.79673 4.86558 4.90800 4.91959 4.97397 5.04533 5.06853 5.10374 5.14799 5.18141 5.25722 5.33027 5.41356 5.53703 5.55698 5.61372 5.64398 5.76710 6.32334 6.65198 7.30870 7.40209 8.11372 8.36759 9.35324 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.004463 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.476079 B = 6272.509365 C = 7601.748094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.140 4.140 4 C 0.173 3.827 5 H 0.057 0.943 6 C 0.124 3.876 7 N -0.710 5.710 8 C 0.536 3.464 9 O -0.581 6.581 10 C -0.196 4.196 11 H 0.128 0.872 12 C -0.102 4.102 13 C -0.135 4.135 14 C -0.091 4.091 15 C -0.128 4.128 16 C -0.095 4.095 17 N -0.727 5.727 18 C -0.215 4.215 19 H 0.079 0.921 20 C -0.071 4.071 21 N -0.968 5.968 22 Si 0.959 3.041 23 H -0.295 1.295 24 H -0.302 1.302 25 H -0.268 1.268 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.409 0.591 36 H 0.096 0.904 37 H 0.132 0.868 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.371 0.629 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.186 7.518 6.817 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.128 4.128 3 C -0.198 4.198 4 C 0.065 3.935 5 H 0.075 0.925 6 C 0.000 4.000 7 N -0.360 5.360 8 C 0.324 3.676 9 O -0.462 6.462 10 C -0.217 4.217 11 H 0.146 0.854 12 C -0.139 4.139 13 C -0.136 4.136 14 C -0.128 4.128 15 C -0.165 4.165 16 C -0.132 4.132 17 N -0.367 5.367 18 C -0.347 4.347 19 H 0.097 0.903 20 C -0.263 4.263 21 N -0.620 5.620 22 Si 0.790 3.210 23 H -0.222 1.222 24 H -0.229 1.229 25 H -0.193 1.193 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.245 0.755 36 H 0.115 0.885 37 H 0.150 0.850 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.203 0.797 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.547 7.931 6.379 16.157 hybrid contribution -1.510 -1.076 -0.126 1.858 sum 11.037 6.856 6.253 14.420 Atomic orbital electron populations 1.21731 0.95355 1.01757 1.00349 1.21633 0.96456 0.96322 0.98432 1.21845 1.00821 0.94911 1.02205 1.20669 0.90095 0.86068 0.96715 0.92545 1.21578 0.94540 0.95437 0.88484 1.45973 1.06860 1.52686 1.30475 1.20102 0.81969 0.80025 0.85541 1.90616 1.56164 1.50673 1.48702 1.22175 0.97927 1.03181 0.98462 0.85441 1.22869 0.98213 0.98228 0.94566 1.22513 0.88696 1.00851 1.01547 1.22291 0.93954 0.99690 0.96911 1.22781 0.95782 0.98053 0.99875 1.22519 0.93941 0.94278 1.02440 1.42576 1.17369 1.03386 1.73363 1.19483 0.93217 0.92200 1.29800 0.90267 1.25358 1.01283 0.96164 1.03535 1.69814 1.38405 0.99818 1.53945 0.85347 0.80959 0.76710 0.78015 1.22244 1.22921 1.19326 0.93347 0.93021 0.93245 0.93329 0.92474 0.92050 0.92145 0.93773 0.90296 0.75476 0.88548 0.85036 0.91778 0.92433 0.88705 0.90384 0.89396 0.90034 0.79673 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 8.27 71.98 0.60 -4.07 16 2 C -0.11 -3.54 2.69 -10.79 -0.03 -3.57 16 3 C -0.14 -3.61 8.84 71.98 0.64 -2.98 16 4 C 0.17 6.29 2.18 44.99 0.10 6.39 16 5 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 6 C 0.12 4.26 4.73 86.38 0.41 4.67 16 7 N -0.71 -24.18 5.39 -463.07 -2.50 -26.68 16 8 C 0.54 18.25 7.61 87.66 0.67 18.92 16 9 O -0.58 -22.79 15.14 -3.01 -0.05 -22.84 16 10 C -0.20 -5.34 6.19 -11.68 -0.07 -5.41 16 11 H 0.13 3.33 8.14 -2.39 -0.02 3.31 16 12 C -0.10 -2.13 10.23 30.45 0.31 -1.82 16 13 C -0.14 -3.20 2.88 -52.37 -0.15 -3.35 16 14 C -0.09 -2.26 6.47 30.98 0.20 -2.06 16 15 C -0.13 -2.25 8.08 31.19 0.25 -2.00 16 16 C -0.09 -1.77 8.10 30.98 0.25 -1.52 16 17 N -0.73 -33.24 4.44 -322.95 -1.43 -34.67 16 18 C -0.22 -10.81 7.56 84.03 0.64 -10.18 16 19 H 0.08 3.83 7.41 -2.91 -0.02 3.81 16 20 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 21 N -0.97 -56.86 13.06 21.65 0.28 -56.58 16 22 Si 0.96 44.32 29.55 68.60 2.03 46.34 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 2.08 6.01 -2.39 -0.01 2.07 16 29 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.06 1.42 6.55 -2.39 -0.02 1.40 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 2.49 6.71 -2.39 -0.02 2.47 16 35 H 0.41 14.14 8.14 -92.71 -0.75 13.39 16 36 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.06 1.87 8.05 -2.39 -0.02 1.85 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.37 19.05 7.80 -92.71 -0.72 18.32 16 45 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -61.94 359.27 2.10 -59.84 By element: Atomic # 1 Polarization: 45.46 SS G_CDS: -0.51 Total: 44.95 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 4.27 Total: -10.37 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -3.65 Total: -117.93 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.84 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -61.94 2.10 -59.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698973285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.622 kcal (2) G-P(sol) polarization free energy of solvation -61.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds