Wall clock time and date at job start Tue Mar 31 2020 01:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47119 * 2 1 4 4 C 1.52998 * 109.46870 * 119.99896 * 2 1 3 5 5 H 1.09009 * 109.46923 * 60.00250 * 4 2 1 6 6 C 1.53002 * 109.46752 * 179.97438 * 4 2 1 7 7 N 1.46498 * 109.46790 * 175.00161 * 6 4 2 8 8 C 1.34781 * 119.99881 * 180.02562 * 7 6 4 9 9 O 1.21276 * 120.00266 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99946 * 179.97438 * 8 7 6 11 11 H 1.09002 * 115.56208 * 325.58510 * 10 8 7 12 12 C 1.53128 * 117.51463 * 111.32081 * 10 8 7 13 13 C 1.52456 * 117.51382 * 179.84851 * 10 8 7 14 14 C 1.53261 * 128.58798 * 134.94890 * 13 10 8 15 15 C 1.53884 * 86.88459 * 194.88643 * 14 13 10 16 16 C 1.53257 * 128.58564 * 10.15255 * 13 10 8 17 17 N 1.46490 * 109.47539 * 299.99951 * 4 2 1 18 18 C 1.36935 * 120.00121 * 84.99635 * 17 4 2 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 4 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 4 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 H 1.09000 * 109.47012 * 60.00076 * 1 2 3 27 27 H 1.08997 * 109.47519 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47319 * 300.00248 * 1 2 3 29 29 H 1.08998 * 109.47097 * 240.00257 * 2 1 3 30 30 H 1.09003 * 109.47129 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47117 * 299.99860 * 3 2 1 32 32 H 1.08998 * 109.47227 * 59.99696 * 3 2 1 33 33 H 1.08995 * 109.47277 * 295.00265 * 6 4 2 34 34 H 1.08998 * 109.47005 * 55.00959 * 6 4 2 35 35 H 0.97000 * 120.00512 * 359.97438 * 7 6 4 36 36 H 1.09003 * 117.51240 * 214.90205 * 12 10 8 37 37 H 1.08995 * 117.50645 * 359.95356 * 12 10 8 38 38 H 1.08995 * 113.64582 * 309.38952 * 14 13 10 39 39 H 1.09003 * 113.64053 * 80.39095 * 14 13 10 40 40 H 1.08994 * 113.59271 * 270.39028 * 15 14 13 41 41 H 1.09003 * 113.58578 * 139.56838 * 15 14 13 42 42 H 1.09000 * 113.64675 * 279.61249 * 16 13 10 43 43 H 1.08994 * 113.64729 * 50.52331 * 16 13 10 44 44 H 0.97000 * 120.00577 * 265.00234 * 17 4 2 45 45 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -1.7490 1.2492 6 6 3.5700 -0.7218 1.2489 7 7 4.0583 -1.3055 2.5007 8 6 5.3834 -1.4096 2.7239 9 8 6.1715 -1.0196 1.8887 10 6 5.8858 -2.0095 4.0118 11 1 5.2778 -1.8071 4.8936 12 6 6.5870 -3.3685 3.9330 13 6 7.3953 -2.1029 4.2036 14 6 8.2256 -1.7455 5.4412 15 6 9.4593 -1.7883 4.5224 16 6 8.5073 -1.4783 3.3538 17 7 1.5517 -0.0307 2.4454 18 6 0.3101 -0.3210 2.9447 19 1 -0.3090 -1.0594 2.4570 20 6 -0.1528 0.3337 4.0779 21 7 0.6015 1.2339 4.6720 22 14 -1.8462 -0.0629 4.7594 23 1 -2.1016 0.7666 5.9644 24 1 -2.8753 0.2308 3.7298 25 1 -1.9083 -1.5007 5.1254 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.9329 -1.3114 0.4071 34 1 3.9336 0.3018 1.1593 35 1 3.4280 -1.6164 3.1693 36 1 6.4407 -4.0595 4.7632 37 1 6.6841 -3.8286 2.9497 38 1 8.0115 -0.7539 5.8398 39 1 8.2241 -2.5208 6.2074 40 1 9.9218 -2.7732 4.4588 41 1 10.1789 -0.9941 4.7211 42 1 8.7316 -2.0393 2.4465 43 1 8.3708 -0.4126 3.1701 44 1 2.1078 0.6323 2.8837 45 1 1.4810 1.4396 4.3183 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698973293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:47 Heat of formation + Delta-G solvation = 9.040015 kcal Electronic energy + Delta-G solvation = -22591.310158 eV Core-core repulsion = 19417.179526 eV Total energy + Delta-G solvation = -3174.130632 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.21000 -38.50951 -37.23970 -33.84783 -33.62403 -33.21887 -30.06197 -28.01149 -26.38890 -25.70054 -24.38345 -23.21903 -23.09848 -21.84790 -19.98894 -18.90628 -18.31300 -17.43264 -16.87939 -15.97159 -15.27347 -15.12722 -15.00749 -14.71169 -14.23549 -13.77811 -13.68800 -13.39257 -13.26282 -12.63774 -12.37961 -12.23314 -12.07213 -11.82007 -11.59012 -11.47536 -11.37017 -11.11416 -10.87571 -10.76989 -10.53029 -10.36906 -10.12274 -10.10000 -10.02610 -9.80787 -9.77088 -9.40174 -9.21823 -8.92813 -8.61730 -7.09699 -6.13181 -3.14344 2.76550 3.45817 3.48409 3.50832 3.68296 3.78396 4.41885 4.59242 4.62272 4.76034 4.77893 4.86011 5.25249 5.30947 5.34849 5.37185 5.49878 5.55832 5.61713 5.67268 5.68163 5.75588 5.77502 5.81856 5.82739 5.94287 6.05577 6.10415 6.13238 6.27154 6.27810 6.35054 6.37346 6.52324 6.57461 6.65389 6.72325 6.91867 6.97042 7.29655 7.77581 7.94367 8.58749 8.70580 9.15709 10.02523 10.17961 11.33791 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.004407 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.423376 B = 6352.409092 C = 7427.006650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.174 3.826 5 H 0.053 0.947 6 C 0.111 3.889 7 N -0.711 5.711 8 C 0.540 3.460 9 O -0.550 6.550 10 C -0.177 4.177 11 H 0.123 0.877 12 C -0.123 4.123 13 C -0.127 4.127 14 C -0.099 4.099 15 C -0.142 4.142 16 C -0.081 4.081 17 N -0.728 5.728 18 C -0.326 4.326 19 H 0.067 0.933 20 C -0.042 4.042 21 N -0.942 5.942 22 Si 1.075 2.925 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.296 1.296 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.409 0.591 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.368 0.632 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.551 -7.335 -2.554 13.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.198 4.198 4 C 0.063 3.937 5 H 0.071 0.929 6 C -0.013 4.013 7 N -0.362 5.362 8 C 0.326 3.674 9 O -0.429 6.429 10 C -0.198 4.198 11 H 0.141 0.859 12 C -0.160 4.160 13 C -0.128 4.128 14 C -0.137 4.137 15 C -0.180 4.180 16 C -0.118 4.118 17 N -0.371 5.371 18 C -0.457 4.457 19 H 0.085 0.915 20 C -0.240 4.240 21 N -0.587 5.587 22 Si 0.906 3.094 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.224 1.224 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.246 0.754 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.202 0.798 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.838 -6.849 -2.031 12.980 hybrid contribution 0.624 -0.297 -0.874 1.114 sum 11.462 -7.146 -2.905 13.816 Atomic orbital electron populations 1.21827 0.94883 1.00884 1.02064 1.21611 0.96919 0.96461 0.97913 1.21782 0.99649 0.96832 1.01524 1.20468 0.89246 0.95869 0.88074 0.92876 1.21752 0.95627 0.98356 0.85570 1.45959 1.06639 1.62315 1.21247 1.19582 0.82391 0.78465 0.86985 1.90640 1.55618 1.49771 1.46881 1.22180 0.96738 1.02570 0.98283 0.85877 1.22779 1.00624 0.89268 1.03343 1.22268 0.89777 1.01084 0.99650 1.22506 0.94577 1.01786 0.94782 1.22814 0.96145 1.01685 0.97320 1.22295 0.92173 1.01165 0.96142 1.42415 1.18195 1.47653 1.28886 1.19987 0.93649 1.21571 1.10482 0.91543 1.25661 1.05608 0.97415 0.95344 1.70890 1.11333 1.34149 1.42344 0.83304 0.74620 0.75267 0.76203 1.21189 1.22329 1.22364 0.95034 0.94132 0.89343 0.93223 0.93661 0.94143 0.91674 0.92072 0.91546 0.75450 0.87783 0.88264 0.89566 0.91343 0.90307 0.91387 0.91474 0.89468 0.79850 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.26 37.16 0.31 -2.24 16 2 C -0.11 -1.86 2.80 -90.62 -0.25 -2.11 16 3 C -0.14 -2.41 8.69 37.16 0.32 -2.09 16 4 C 0.17 3.22 2.34 -67.94 -0.16 3.06 16 5 H 0.05 1.02 8.08 -51.92 -0.42 0.60 16 6 C 0.11 1.92 5.02 -4.04 -0.02 1.89 16 7 N -0.71 -11.97 5.39 -60.30 -0.32 -12.30 16 8 C 0.54 9.07 7.61 -10.98 -0.08 8.98 16 9 O -0.55 -10.58 15.13 5.56 0.08 -10.49 16 10 C -0.18 -2.44 6.19 -91.98 -0.57 -3.01 16 11 H 0.12 1.63 8.14 -51.93 -0.42 1.20 16 12 C -0.12 -1.41 10.24 -26.88 -0.28 -1.68 16 13 C -0.13 -1.57 2.88 -154.73 -0.45 -2.02 16 14 C -0.10 -1.02 8.10 -26.14 -0.21 -1.24 16 15 C -0.14 -1.38 8.08 -25.81 -0.21 -1.59 16 16 C -0.08 -1.01 6.47 -26.14 -0.17 -1.17 16 17 N -0.73 -16.16 3.67 -53.43 -0.20 -16.36 16 18 C -0.33 -8.21 7.57 -15.06 -0.11 -8.32 16 19 H 0.07 1.67 7.40 -52.49 -0.39 1.28 16 20 C -0.04 -1.14 5.50 -17.43 -0.10 -1.24 16 21 N -0.94 -27.53 13.70 55.49 0.76 -26.77 16 22 Si 1.07 24.73 29.92 -169.99 -5.09 19.65 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.30 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.30 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.92 6.01 -51.93 -0.31 1.60 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.73 6.32 -51.93 -0.33 0.41 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.29 7.60 -51.93 -0.39 0.89 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.21 6.17 -51.93 -0.32 0.89 16 35 H 0.41 7.02 8.14 -40.82 -0.33 6.69 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.21 8.04 -51.93 -0.42 0.80 16 44 H 0.37 8.77 6.63 -40.82 -0.27 8.50 16 45 H 0.26 7.39 6.77 -40.82 -0.28 7.11 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -28.92 355.90 -9.13 -38.04 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -7.75 Total: 15.63 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -1.98 Total: -12.77 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.24 Total: -55.42 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.09 Total: 19.65 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.92 -9.13 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698973293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.085 kcal (2) G-P(sol) polarization free energy of solvation -28.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds