Wall clock time and date at job start Tue Mar 31 2020 01:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47119 * 2 1 4 4 C 1.52998 * 109.46870 * 119.99896 * 2 1 3 5 5 H 1.09009 * 109.46923 * 60.00250 * 4 2 1 6 6 C 1.53002 * 109.46752 * 179.97438 * 4 2 1 7 7 N 1.46498 * 109.46790 * 175.00161 * 6 4 2 8 8 C 1.34781 * 119.99881 * 180.02562 * 7 6 4 9 9 O 1.21276 * 120.00266 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99946 * 179.97438 * 8 7 6 11 11 H 1.09002 * 115.56208 * 325.58510 * 10 8 7 12 12 C 1.53128 * 117.51463 * 111.32081 * 10 8 7 13 13 C 1.52456 * 117.51382 * 179.84851 * 10 8 7 14 14 C 1.53261 * 128.58798 * 134.94890 * 13 10 8 15 15 C 1.53884 * 86.88459 * 194.88643 * 14 13 10 16 16 C 1.53257 * 128.58564 * 10.15255 * 13 10 8 17 17 N 1.46490 * 109.47539 * 299.99951 * 4 2 1 18 18 C 1.36935 * 120.00121 * 84.99635 * 17 4 2 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 4 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 4 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 H 1.09000 * 109.47012 * 60.00076 * 1 2 3 27 27 H 1.08997 * 109.47519 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47319 * 300.00248 * 1 2 3 29 29 H 1.08998 * 109.47097 * 240.00257 * 2 1 3 30 30 H 1.09003 * 109.47129 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47117 * 299.99860 * 3 2 1 32 32 H 1.08998 * 109.47227 * 59.99696 * 3 2 1 33 33 H 1.08995 * 109.47277 * 295.00265 * 6 4 2 34 34 H 1.08998 * 109.47005 * 55.00959 * 6 4 2 35 35 H 0.97000 * 120.00512 * 359.97438 * 7 6 4 36 36 H 1.09003 * 117.51240 * 214.90205 * 12 10 8 37 37 H 1.08995 * 117.50645 * 359.95356 * 12 10 8 38 38 H 1.08995 * 113.64582 * 309.38952 * 14 13 10 39 39 H 1.09003 * 113.64053 * 80.39095 * 14 13 10 40 40 H 1.08994 * 113.59271 * 270.39028 * 15 14 13 41 41 H 1.09003 * 113.58578 * 139.56838 * 15 14 13 42 42 H 1.09000 * 113.64675 * 279.61249 * 16 13 10 43 43 H 1.08994 * 113.64729 * 50.52331 * 16 13 10 44 44 H 0.97000 * 120.00577 * 265.00234 * 17 4 2 45 45 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -1.7490 1.2492 6 6 3.5700 -0.7218 1.2489 7 7 4.0583 -1.3055 2.5007 8 6 5.3834 -1.4096 2.7239 9 8 6.1715 -1.0196 1.8887 10 6 5.8858 -2.0095 4.0118 11 1 5.2778 -1.8071 4.8936 12 6 6.5870 -3.3685 3.9330 13 6 7.3953 -2.1029 4.2036 14 6 8.2256 -1.7455 5.4412 15 6 9.4593 -1.7883 4.5224 16 6 8.5073 -1.4783 3.3538 17 7 1.5517 -0.0307 2.4454 18 6 0.3101 -0.3210 2.9447 19 1 -0.3090 -1.0594 2.4570 20 6 -0.1528 0.3337 4.0779 21 7 0.6015 1.2339 4.6720 22 14 -1.8462 -0.0629 4.7594 23 1 -2.1016 0.7666 5.9644 24 1 -2.8753 0.2308 3.7298 25 1 -1.9083 -1.5007 5.1254 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.9329 -1.3114 0.4071 34 1 3.9336 0.3018 1.1593 35 1 3.4280 -1.6164 3.1693 36 1 6.4407 -4.0595 4.7632 37 1 6.6841 -3.8286 2.9497 38 1 8.0115 -0.7539 5.8398 39 1 8.2241 -2.5208 6.2074 40 1 9.9218 -2.7732 4.4588 41 1 10.1789 -0.9941 4.7211 42 1 8.7316 -2.0393 2.4465 43 1 8.3708 -0.4126 3.1701 44 1 2.1078 0.6323 2.8837 45 1 1.4810 1.4396 4.3183 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698973293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:46 Heat of formation + Delta-G solvation = -7.348646 kcal Electronic energy + Delta-G solvation = -22592.020824 eV Core-core repulsion = 19417.179526 eV Total energy + Delta-G solvation = -3174.841298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36270 -39.75694 -38.70511 -35.37825 -35.00254 -34.58604 -31.80850 -29.59938 -27.85437 -26.60211 -25.88645 -24.92928 -23.96089 -23.22779 -21.31221 -20.33817 -19.39439 -19.29607 -18.15251 -17.28955 -16.64772 -16.28265 -16.18031 -16.08752 -15.67815 -15.53663 -15.18819 -14.94699 -14.63703 -13.85325 -13.64968 -13.51905 -13.23717 -12.99796 -12.86928 -12.79426 -12.61410 -12.45548 -12.42479 -12.33572 -12.05079 -11.92520 -11.51268 -11.42588 -11.29546 -11.15745 -11.04577 -10.87918 -10.80471 -10.58245 -10.02812 -9.03097 -8.24633 -5.19263 1.49975 1.62248 1.70096 1.85610 2.19399 2.74725 2.76599 3.41203 3.51122 3.67410 3.74644 3.76618 3.83141 3.88417 3.95039 4.13213 4.18633 4.24125 4.33057 4.50000 4.57838 4.59473 4.67453 4.75494 4.83527 4.86388 4.87574 4.88617 5.00155 5.04395 5.07777 5.12774 5.14775 5.19132 5.23752 5.37948 5.47871 5.50608 5.52140 5.71515 5.76784 6.56750 6.60088 7.16770 7.23602 8.07451 8.20569 9.25730 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.004407 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.423376 B = 6352.409092 C = 7427.006650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.176 3.824 5 H 0.053 0.947 6 C 0.120 3.880 7 N -0.711 5.711 8 C 0.536 3.464 9 O -0.579 6.579 10 C -0.197 4.197 11 H 0.127 0.873 12 C -0.102 4.102 13 C -0.135 4.135 14 C -0.095 4.095 15 C -0.127 4.127 16 C -0.091 4.091 17 N -0.732 5.732 18 C -0.301 4.301 19 H 0.070 0.930 20 C -0.102 4.102 21 N -0.980 5.980 22 Si 1.117 2.883 23 H -0.302 1.302 24 H -0.284 1.284 25 H -0.279 1.279 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.408 0.592 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.358 0.642 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.002 -9.172 -2.992 15.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.191 4.191 4 C 0.067 3.933 5 H 0.071 0.929 6 C -0.004 4.004 7 N -0.361 5.361 8 C 0.324 3.676 9 O -0.460 6.460 10 C -0.218 4.218 11 H 0.145 0.855 12 C -0.139 4.139 13 C -0.135 4.135 14 C -0.132 4.132 15 C -0.165 4.165 16 C -0.129 4.129 17 N -0.374 5.374 18 C -0.433 4.433 19 H 0.088 0.912 20 C -0.293 4.293 21 N -0.629 5.629 22 Si 0.944 3.056 23 H -0.228 1.228 24 H -0.210 1.210 25 H -0.205 1.205 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.244 0.756 36 H 0.150 0.850 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.190 0.810 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.293 -8.724 -2.515 14.490 hybrid contribution 0.519 0.258 -0.876 1.051 sum 11.813 -8.466 -3.391 14.924 Atomic orbital electron populations 1.21733 0.95383 1.00875 1.01177 1.21585 0.96394 0.96564 0.98123 1.21701 1.00047 0.96591 1.00749 1.20589 0.90039 0.95383 0.87266 0.92927 1.21619 0.94482 0.97981 0.86333 1.45984 1.06873 1.62228 1.21065 1.20118 0.81926 0.77842 0.87736 1.90620 1.56116 1.51050 1.48177 1.22175 0.98017 1.04953 0.96688 0.85503 1.22890 0.98228 0.88554 1.04230 1.22543 0.88614 1.01498 1.00874 1.22523 0.93920 1.02188 0.94534 1.22782 0.95783 1.02893 0.95006 1.22295 0.93951 0.99680 0.96938 1.42481 1.17285 1.47606 1.29992 1.20204 0.94159 1.19737 1.09201 0.91242 1.26764 1.08102 0.97821 0.96660 1.70995 1.11471 1.36660 1.43795 0.82728 0.71891 0.75658 0.75292 1.22845 1.21032 1.20510 0.92965 0.93635 0.93143 0.90297 0.92971 0.92266 0.95008 0.90793 0.92772 0.75615 0.85016 0.88568 0.90002 0.89361 0.88678 0.90331 0.92458 0.91747 0.80978 0.94731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 8.26 71.98 0.59 -4.09 16 2 C -0.11 -3.46 2.80 -10.79 -0.03 -3.49 16 3 C -0.13 -4.46 8.69 71.98 0.63 -3.83 16 4 C 0.18 6.37 2.34 44.99 0.11 6.48 16 5 H 0.05 1.94 8.08 -2.38 -0.02 1.92 16 6 C 0.12 4.08 5.02 86.38 0.43 4.51 16 7 N -0.71 -23.98 5.39 -463.07 -2.50 -26.48 16 8 C 0.54 18.08 7.61 87.66 0.67 18.75 16 9 O -0.58 -22.52 15.13 -3.02 -0.05 -22.57 16 10 C -0.20 -5.32 6.19 -11.68 -0.07 -5.40 16 11 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 12 C -0.10 -2.13 10.24 30.50 0.31 -1.82 16 13 C -0.13 -3.16 2.88 -52.33 -0.15 -3.31 16 14 C -0.09 -1.75 8.10 30.98 0.25 -1.50 16 15 C -0.13 -2.22 8.08 31.19 0.25 -1.97 16 16 C -0.09 -2.25 6.47 30.98 0.20 -2.05 16 17 N -0.73 -32.77 3.67 -322.95 -1.19 -33.96 16 18 C -0.30 -15.19 7.57 84.03 0.64 -14.56 16 19 H 0.07 3.43 7.40 -2.91 -0.02 3.41 16 20 C -0.10 -5.56 5.50 84.86 0.47 -5.09 16 21 N -0.98 -58.80 13.70 21.65 0.30 -58.51 16 22 Si 1.12 50.10 29.92 68.60 2.05 52.15 16 23 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 2.15 6.01 -2.39 -0.01 2.14 16 29 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 1.65 6.32 -2.39 -0.02 1.63 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.03 1.26 7.60 -2.39 -0.02 1.24 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.05 1.98 6.17 -2.39 -0.01 1.97 16 35 H 0.41 14.04 8.14 -92.71 -0.75 13.29 16 36 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 42 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.86 8.04 -2.39 -0.02 1.84 16 44 H 0.36 17.60 6.63 -92.71 -0.61 16.98 16 45 H 0.24 14.59 6.77 -92.71 -0.63 13.96 16 Total: -1.00 -63.20 355.90 2.66 -60.54 By element: Atomic # 1 Polarization: 46.44 SS G_CDS: -0.25 Total: 46.19 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 4.29 Total: -17.37 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -3.38 Total: -118.94 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.05 Total: 52.15 kcal Total: -63.20 2.66 -60.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698973293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.190 kcal (2) G-P(sol) polarization free energy of solvation -63.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds