Wall clock time and date at job start Tue Mar 31 2020 01:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47263 * 2 1 4 4 C 1.52994 * 109.47519 * 120.00002 * 2 1 3 5 5 H 1.09000 * 115.56457 * 207.33497 * 4 2 1 6 6 C 1.53004 * 117.49754 * 353.02305 * 4 2 1 7 7 C 1.53002 * 59.99985 * 107.48869 * 6 4 2 8 8 H 1.08998 * 117.49785 * 107.52051 * 7 6 4 9 9 C 1.50695 * 117.49636 * 252.50753 * 7 6 4 10 10 O 1.21286 * 120.00073 * 115.48497 * 9 7 6 11 11 N 1.34776 * 120.00715 * 295.48694 * 9 7 6 12 12 C 1.46500 * 120.00619 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47096 * 176.19536 * 12 11 9 14 14 N 1.46501 * 112.85331 * 45.23063 * 13 12 11 15 15 C 1.36933 * 120.00396 * 66.47180 * 14 13 12 16 16 H 1.08002 * 119.99604 * 5.36567 * 15 14 13 17 17 C 1.38805 * 120.00212 * 185.36192 * 15 14 13 18 18 N 1.31619 * 120.00369 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00086 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47140 * 89.99990 * 19 17 15 21 21 H 1.48495 * 109.47263 * 209.99933 * 19 17 15 22 22 H 1.48504 * 109.47153 * 330.00023 * 19 17 15 23 23 C 1.53783 * 113.61382 * 176.42378 * 13 12 11 24 24 C 1.53787 * 87.08325 * 140.06165 * 23 13 12 25 25 C 1.53784 * 87.17039 * 334.52907 * 24 23 13 26 26 H 1.08998 * 109.46807 * 298.28092 * 1 2 3 27 27 H 1.08995 * 109.46945 * 58.27856 * 1 2 3 28 28 H 1.08996 * 109.47150 * 178.28223 * 1 2 3 29 29 H 1.09008 * 109.46871 * 240.00457 * 2 1 3 30 30 H 1.08999 * 109.47221 * 184.47755 * 3 2 1 31 31 H 1.09003 * 109.47298 * 304.47615 * 3 2 1 32 32 H 1.08997 * 109.47455 * 64.47370 * 3 2 1 33 33 H 1.09000 * 117.49612 * 359.97438 * 6 4 2 34 34 H 1.09008 * 117.51823 * 214.97157 * 6 4 2 35 35 H 0.97009 * 119.99543 * 0.02562 * 11 9 7 36 36 H 1.08992 * 109.47140 * 56.18852 * 12 11 9 37 37 H 1.09005 * 109.46673 * 296.19014 * 12 11 9 38 38 H 0.97006 * 119.99508 * 246.47393 * 14 13 12 39 39 H 0.97001 * 120.00236 * 179.97438 * 18 17 15 40 40 H 1.09004 * 113.60992 * 25.51494 * 23 13 12 41 41 H 1.08996 * 113.69494 * 254.62392 * 23 13 12 42 42 H 1.08997 * 113.61297 * 89.11427 * 24 23 13 43 43 H 1.08997 * 113.61532 * 219.93652 * 24 23 13 44 44 H 1.08999 * 113.61463 * 140.02122 * 25 24 23 45 45 H 1.09004 * 113.61381 * 270.92443 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.0204 -0.4063 1.6068 6 6 1.0055 -1.1360 2.2973 7 6 1.6679 -2.1960 1.4149 8 1 2.4030 -2.8516 1.8816 9 6 0.8269 -2.8270 0.3353 10 8 1.1127 -2.6598 -0.8315 11 7 -0.2428 -3.5770 0.6661 12 6 -1.0600 -4.1909 -0.3834 13 6 -2.1447 -5.0593 0.2572 14 7 -2.8155 -4.3967 1.3784 15 6 -3.5922 -3.2913 1.1552 16 1 -3.7808 -2.9590 0.1451 17 6 -4.1370 -2.5978 2.2272 18 7 -3.9075 -3.0031 3.4582 19 14 -5.1971 -1.0902 1.9226 20 1 -6.6173 -1.5027 1.7881 21 1 -5.0606 -0.1503 3.0641 22 1 -4.7561 -0.4191 0.6734 23 6 -3.1152 -5.6826 -0.7599 24 6 -3.0655 -6.9605 0.0942 25 6 -1.6815 -6.4936 0.5755 26 1 -0.3633 0.4869 0.9050 27 1 -0.3633 0.5403 -0.8741 28 1 -0.3633 -1.0272 -0.0308 29 1 1.8933 -0.5138 -0.8901 30 1 3.1271 1.4435 -0.0802 31 1 1.6127 1.9790 -0.8472 32 1 1.7437 1.9327 0.9273 33 1 -0.0384 -0.8947 2.0971 34 1 1.3050 -1.0942 3.3446 35 1 -0.4717 -3.7104 1.5994 36 1 -0.4283 -4.8097 -1.0205 37 1 -1.5272 -3.4100 -0.9835 38 1 -2.7094 -4.7412 2.2791 39 1 -4.2879 -2.5183 4.2073 40 1 -2.6861 -5.8052 -1.7544 41 1 -4.0959 -5.2072 -0.7777 42 1 -3.8162 -6.9873 0.8839 43 1 -3.0367 -7.8778 -0.4938 44 1 -1.5052 -6.6717 1.6363 45 1 -0.8612 -6.8375 -0.0545 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700142180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:20 Heat of formation + Delta-G solvation = 9.106222 kcal Electronic energy + Delta-G solvation = -23414.933462 eV Core-core repulsion = 20240.805701 eV Total energy + Delta-G solvation = -3174.127761 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.01451 -38.77432 -36.91044 -33.82437 -33.23414 -32.80949 -30.00573 -27.48433 -26.97280 -25.26561 -24.20293 -23.41816 -23.29752 -21.43007 -19.61366 -18.95285 -18.12944 -17.13921 -16.67297 -15.77840 -15.44820 -14.96247 -14.79610 -14.39501 -14.07096 -13.83618 -13.58403 -13.25489 -12.84634 -12.55543 -12.49004 -12.22143 -12.01511 -11.65008 -11.45598 -11.24473 -11.09277 -11.02896 -10.83907 -10.71115 -10.60287 -10.37731 -10.29953 -10.18640 -10.03707 -9.75628 -9.73678 -9.47804 -9.14592 -8.88883 -8.31770 -7.09047 -5.86133 -3.16144 3.14812 3.37789 3.45006 3.45667 3.66165 4.01525 4.50850 4.77471 5.00929 5.08459 5.18530 5.21437 5.25847 5.30978 5.38260 5.44709 5.50197 5.51405 5.61997 5.78536 5.79373 5.91189 5.97978 6.06412 6.09811 6.11833 6.14629 6.18731 6.21066 6.34468 6.36546 6.40806 6.41976 6.49873 6.67190 6.67311 6.75099 6.87882 7.00387 7.19132 7.67772 8.21802 8.32200 8.83491 9.43929 9.96622 10.32450 11.35530 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012868 B = 0.006989 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.410532 B = 4005.127162 C = 5384.275082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.070 4.070 3 C -0.142 4.142 4 C -0.117 4.117 5 H 0.106 0.894 6 C -0.164 4.164 7 C -0.185 4.185 8 H 0.123 0.877 9 C 0.541 3.459 10 O -0.556 6.556 11 N -0.697 5.697 12 C 0.123 3.877 13 C 0.173 3.827 14 N -0.699 5.699 15 C -0.232 4.232 16 H 0.069 0.931 17 C -0.006 4.006 18 N -0.930 5.930 19 Si 0.900 3.100 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.281 1.281 23 C -0.151 4.151 24 C -0.129 4.129 25 C -0.143 4.143 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.408 0.592 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.783 -0.087 -3.388 10.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.088 4.088 3 C -0.199 4.199 4 C -0.136 4.136 5 H 0.124 0.876 6 C -0.201 4.201 7 C -0.206 4.206 8 H 0.141 0.859 9 C 0.327 3.673 10 O -0.435 6.435 11 N -0.347 5.347 12 C -0.004 4.004 13 C 0.080 3.920 14 N -0.340 5.340 15 C -0.363 4.363 16 H 0.087 0.913 17 C -0.202 4.202 18 N -0.578 5.578 19 Si 0.731 3.269 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.191 4.191 24 C -0.166 4.166 25 C -0.181 4.181 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.116 0.884 35 H 0.244 0.756 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.221 0.779 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.861 0.178 -4.243 10.736 hybrid contribution -0.763 0.646 0.740 1.244 sum 9.098 0.824 -3.503 9.784 Atomic orbital electron populations 1.22024 0.94888 1.02831 1.01137 1.20693 0.95955 0.95024 0.97117 1.21807 1.00347 0.96240 1.01526 1.22385 0.99495 0.93580 0.98111 0.87577 1.23329 0.99964 1.00689 0.96107 1.22227 1.03623 0.93304 1.01446 0.85871 1.19485 0.80716 0.78217 0.88835 1.90626 1.71521 1.61576 1.19800 1.45830 1.27176 1.50201 1.11486 1.21725 0.92171 0.96630 0.89838 1.20894 0.91156 0.89417 0.90483 1.42068 1.55949 1.32125 1.03841 1.19068 1.22351 1.02363 0.92545 0.91272 1.24672 1.01210 0.99163 0.95198 1.69642 1.49149 1.41704 0.97270 0.86296 0.80494 0.83043 0.77041 1.21782 1.21788 1.20700 1.23302 1.01529 0.97178 0.97103 1.22631 0.97520 0.96644 0.99841 1.23235 0.97004 0.96824 1.01061 0.92694 0.93148 0.91600 0.89379 0.93079 0.92864 0.92855 0.86948 0.88419 0.75600 0.92713 0.92388 0.77885 0.93493 0.91372 0.90770 0.90079 0.92812 0.91690 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 7.57 37.16 0.28 -2.22 16 2 C -0.07 -1.01 2.47 -90.62 -0.22 -1.24 16 3 C -0.14 -1.69 9.17 37.16 0.34 -1.34 16 4 C -0.12 -1.59 5.71 -90.62 -0.52 -2.11 16 5 H 0.11 1.22 8.10 -51.93 -0.42 0.80 16 6 C -0.16 -2.33 9.33 -26.73 -0.25 -2.58 16 7 C -0.19 -2.71 6.14 -91.77 -0.56 -3.28 16 8 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 9 C 0.54 9.60 4.80 -10.99 -0.05 9.55 16 10 O -0.56 -11.25 14.54 5.55 0.08 -11.17 16 11 N -0.70 -12.47 5.43 -60.30 -0.33 -12.80 16 12 C 0.12 2.25 5.08 -4.04 -0.02 2.23 16 13 C 0.17 3.15 0.99 -130.87 -0.13 3.02 16 14 N -0.70 -15.40 4.29 -46.35 -0.20 -15.59 16 15 C -0.23 -5.86 9.25 -15.06 -0.14 -6.00 16 16 H 0.07 1.78 7.83 -52.49 -0.41 1.36 16 17 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 18 N -0.93 -25.86 13.06 55.49 0.72 -25.14 16 19 Si 0.90 21.60 29.55 -169.99 -5.02 16.57 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 C -0.15 -2.57 7.28 -25.91 -0.19 -2.76 16 24 C -0.13 -2.00 7.98 -25.91 -0.21 -2.21 16 25 C -0.14 -2.22 7.39 -25.77 -0.19 -2.41 16 26 H 0.05 0.88 6.94 -51.93 -0.36 0.52 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.26 4.97 -51.93 -0.26 1.00 16 29 H 0.09 1.45 6.85 -51.92 -0.36 1.09 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.11 1.88 5.82 -51.93 -0.30 1.57 16 34 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 35 H 0.41 7.47 7.84 -40.82 -0.32 7.15 16 36 H 0.05 0.95 7.88 -51.93 -0.41 0.54 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.39 9.13 7.88 -40.82 -0.32 8.81 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 41 H 0.07 1.41 7.82 -51.93 -0.41 1.00 16 42 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 45 H 0.08 1.07 7.93 -51.93 -0.41 0.66 16 LS Contribution 354.50 15.07 5.34 5.34 Total: -1.00 -27.72 354.50 -9.12 -36.84 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -7.76 Total: 17.56 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -1.96 Total: -11.60 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.20 Total: -53.53 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.72 -9.12 -36.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700142180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.944 kcal (2) G-P(sol) polarization free energy of solvation -27.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds