Wall clock time and date at job start Tue Mar 31 2020 01:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47263 * 2 1 4 4 C 1.52994 * 109.47519 * 120.00002 * 2 1 3 5 5 H 1.09000 * 115.56457 * 207.33497 * 4 2 1 6 6 C 1.53004 * 117.49754 * 353.02305 * 4 2 1 7 7 C 1.53002 * 59.99985 * 107.48869 * 6 4 2 8 8 H 1.08998 * 117.49785 * 107.52051 * 7 6 4 9 9 C 1.50695 * 117.49636 * 252.50753 * 7 6 4 10 10 O 1.21286 * 120.00073 * 115.48497 * 9 7 6 11 11 N 1.34776 * 120.00715 * 295.48694 * 9 7 6 12 12 C 1.46500 * 120.00619 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47096 * 176.19536 * 12 11 9 14 14 N 1.46501 * 112.85331 * 45.23063 * 13 12 11 15 15 C 1.36933 * 120.00396 * 66.47180 * 14 13 12 16 16 H 1.08002 * 119.99604 * 5.36567 * 15 14 13 17 17 C 1.38805 * 120.00212 * 185.36192 * 15 14 13 18 18 N 1.31619 * 120.00369 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00086 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47140 * 89.99990 * 19 17 15 21 21 H 1.48495 * 109.47263 * 209.99933 * 19 17 15 22 22 H 1.48504 * 109.47153 * 330.00023 * 19 17 15 23 23 C 1.53783 * 113.61382 * 176.42378 * 13 12 11 24 24 C 1.53787 * 87.08325 * 140.06165 * 23 13 12 25 25 C 1.53784 * 87.17039 * 334.52907 * 24 23 13 26 26 H 1.08998 * 109.46807 * 298.28092 * 1 2 3 27 27 H 1.08995 * 109.46945 * 58.27856 * 1 2 3 28 28 H 1.08996 * 109.47150 * 178.28223 * 1 2 3 29 29 H 1.09008 * 109.46871 * 240.00457 * 2 1 3 30 30 H 1.08999 * 109.47221 * 184.47755 * 3 2 1 31 31 H 1.09003 * 109.47298 * 304.47615 * 3 2 1 32 32 H 1.08997 * 109.47455 * 64.47370 * 3 2 1 33 33 H 1.09000 * 117.49612 * 359.97438 * 6 4 2 34 34 H 1.09008 * 117.51823 * 214.97157 * 6 4 2 35 35 H 0.97009 * 119.99543 * 0.02562 * 11 9 7 36 36 H 1.08992 * 109.47140 * 56.18852 * 12 11 9 37 37 H 1.09005 * 109.46673 * 296.19014 * 12 11 9 38 38 H 0.97006 * 119.99508 * 246.47393 * 14 13 12 39 39 H 0.97001 * 120.00236 * 179.97438 * 18 17 15 40 40 H 1.09004 * 113.60992 * 25.51494 * 23 13 12 41 41 H 1.08996 * 113.69494 * 254.62392 * 23 13 12 42 42 H 1.08997 * 113.61297 * 89.11427 * 24 23 13 43 43 H 1.08997 * 113.61532 * 219.93652 * 24 23 13 44 44 H 1.08999 * 113.61463 * 140.02122 * 25 24 23 45 45 H 1.09004 * 113.61381 * 270.92443 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.0204 -0.4063 1.6068 6 6 1.0055 -1.1360 2.2973 7 6 1.6679 -2.1960 1.4149 8 1 2.4030 -2.8516 1.8816 9 6 0.8269 -2.8270 0.3353 10 8 1.1127 -2.6598 -0.8315 11 7 -0.2428 -3.5770 0.6661 12 6 -1.0600 -4.1909 -0.3834 13 6 -2.1447 -5.0593 0.2572 14 7 -2.8155 -4.3967 1.3784 15 6 -3.5922 -3.2913 1.1552 16 1 -3.7808 -2.9590 0.1451 17 6 -4.1370 -2.5978 2.2272 18 7 -3.9075 -3.0031 3.4582 19 14 -5.1971 -1.0902 1.9226 20 1 -6.6173 -1.5027 1.7881 21 1 -5.0606 -0.1503 3.0641 22 1 -4.7561 -0.4191 0.6734 23 6 -3.1152 -5.6826 -0.7599 24 6 -3.0655 -6.9605 0.0942 25 6 -1.6815 -6.4936 0.5755 26 1 -0.3633 0.4869 0.9050 27 1 -0.3633 0.5403 -0.8741 28 1 -0.3633 -1.0272 -0.0308 29 1 1.8933 -0.5138 -0.8901 30 1 3.1271 1.4435 -0.0802 31 1 1.6127 1.9790 -0.8472 32 1 1.7437 1.9327 0.9273 33 1 -0.0384 -0.8947 2.0971 34 1 1.3050 -1.0942 3.3446 35 1 -0.4717 -3.7104 1.5994 36 1 -0.4283 -4.8097 -1.0205 37 1 -1.5272 -3.4100 -0.9835 38 1 -2.7094 -4.7412 2.2791 39 1 -4.2879 -2.5183 4.2073 40 1 -2.6861 -5.8052 -1.7544 41 1 -4.0959 -5.2072 -0.7777 42 1 -3.8162 -6.9873 0.8839 43 1 -3.0367 -7.8778 -0.4938 44 1 -1.5052 -6.6717 1.6363 45 1 -0.8612 -6.8375 -0.0545 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700142180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:19 Heat of formation + Delta-G solvation = -6.723823 kcal Electronic energy + Delta-G solvation = -23415.619904 eV Core-core repulsion = 20240.805701 eV Total energy + Delta-G solvation = -3174.814203 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36003 -40.18155 -38.21441 -35.36016 -35.04416 -33.98073 -31.85224 -28.98651 -28.15172 -26.69809 -25.86620 -24.90369 -24.39783 -22.81367 -20.99982 -20.15984 -19.60574 -19.06668 -17.98565 -17.18090 -16.84498 -16.49637 -16.10173 -15.94199 -15.59528 -15.23942 -15.00657 -14.91842 -14.29067 -13.94512 -13.72723 -13.53414 -13.24546 -13.04038 -12.98026 -12.92670 -12.63164 -12.49853 -12.29945 -12.18633 -11.93065 -11.91344 -11.74579 -11.64090 -11.48405 -11.25943 -10.94545 -10.89550 -10.82131 -10.44880 -9.81337 -8.98238 -7.91868 -5.18531 1.43143 1.46132 1.51713 1.75496 2.35671 2.55299 2.81683 3.40397 3.63953 3.75725 3.79350 3.85225 3.92150 3.98245 4.07852 4.11902 4.22690 4.26688 4.29611 4.45262 4.66660 4.73904 4.76691 4.83905 4.85118 4.89367 4.91355 4.95649 4.98790 5.05805 5.08883 5.13208 5.21754 5.27138 5.31644 5.38845 5.42324 5.52151 5.55476 5.68679 5.75428 6.31547 6.76728 7.38652 7.40645 8.10019 8.35744 9.29967 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012868 B = 0.006989 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.410532 B = 4005.127162 C = 5384.275082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.069 4.069 3 C -0.136 4.136 4 C -0.107 4.107 5 H 0.139 0.861 6 C -0.162 4.162 7 C -0.193 4.193 8 H 0.151 0.849 9 C 0.539 3.461 10 O -0.584 6.584 11 N -0.698 5.698 12 C 0.131 3.869 13 C 0.159 3.841 14 N -0.701 5.701 15 C -0.216 4.216 16 H 0.060 0.940 17 C -0.056 4.056 18 N -0.956 5.956 19 Si 0.947 3.053 20 H -0.292 1.292 21 H -0.295 1.295 22 H -0.281 1.281 23 C -0.150 4.150 24 C -0.120 4.120 25 C -0.128 4.128 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.406 0.594 36 H 0.069 0.931 37 H 0.028 0.972 38 H 0.378 0.622 39 H 0.249 0.751 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.550 -0.418 -3.487 12.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.193 4.193 4 C -0.125 4.125 5 H 0.156 0.844 6 C -0.199 4.199 7 C -0.213 4.213 8 H 0.168 0.832 9 C 0.326 3.674 10 O -0.466 6.466 11 N -0.347 5.347 12 C 0.004 3.996 13 C 0.067 3.933 14 N -0.341 5.341 15 C -0.348 4.348 16 H 0.078 0.922 17 C -0.249 4.249 18 N -0.606 5.606 19 Si 0.778 3.222 20 H -0.220 1.220 21 H -0.222 1.222 22 H -0.207 1.207 23 C -0.190 4.190 24 C -0.157 4.157 25 C -0.165 4.165 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.139 0.861 35 H 0.242 0.758 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.212 0.788 39 H 0.058 0.942 40 H 0.110 0.890 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.633 -0.167 -4.375 12.430 hybrid contribution -1.318 0.717 0.660 1.639 sum 10.315 0.550 -3.716 10.977 Atomic orbital electron populations 1.21991 0.96848 1.00708 1.01055 1.20654 0.94193 0.96955 0.96926 1.21757 1.01498 0.94061 1.01998 1.22550 1.00528 0.92338 0.97108 0.84356 1.23266 0.98572 1.00578 0.97523 1.22320 1.03885 0.94258 1.00856 0.83181 1.20034 0.80538 0.77544 0.89245 1.90606 1.72272 1.62449 1.21269 1.45863 1.27278 1.50418 1.11137 1.21611 0.92279 0.95823 0.89879 1.21176 0.91436 0.90693 0.89952 1.42055 1.55849 1.31577 1.04597 1.19157 1.21287 1.02540 0.91817 0.92198 1.25161 1.03082 1.01396 0.95302 1.69741 1.50655 1.42683 0.97545 0.85538 0.79199 0.80900 0.76517 1.21969 1.22210 1.20697 1.23319 0.99761 0.97671 0.98263 1.22548 0.96872 0.97157 0.99150 1.23194 0.97769 0.93916 1.01666 0.92624 0.93335 0.94686 0.91445 0.91141 0.92784 0.92112 0.89977 0.86065 0.75831 0.91319 0.95393 0.78814 0.94168 0.89036 0.93421 0.91992 0.89751 0.91696 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 7.57 71.98 0.55 -4.45 16 2 C -0.07 -1.94 2.47 -10.79 -0.03 -1.96 16 3 C -0.14 -2.93 9.17 71.98 0.66 -2.27 16 4 C -0.11 -2.66 5.71 -10.79 -0.06 -2.73 16 5 H 0.14 2.61 8.10 -2.39 -0.02 2.59 16 6 C -0.16 -4.40 9.33 30.60 0.29 -4.11 16 7 C -0.19 -5.34 6.14 -11.54 -0.07 -5.41 16 8 H 0.15 3.35 8.14 -2.39 -0.02 3.33 16 9 C 0.54 19.00 4.80 87.66 0.42 19.42 16 10 O -0.58 -23.81 14.54 -3.05 -0.04 -23.85 16 11 N -0.70 -25.06 5.43 -463.07 -2.51 -27.57 16 12 C 0.13 4.78 5.08 86.38 0.44 5.22 16 13 C 0.16 5.69 0.99 4.22 0.00 5.69 16 14 N -0.70 -31.26 4.29 -300.56 -1.29 -32.55 16 15 C -0.22 -11.11 9.25 84.03 0.78 -10.33 16 16 H 0.06 3.16 7.83 -2.91 -0.02 3.14 16 17 C -0.06 -3.04 5.50 84.86 0.47 -2.57 16 18 N -0.96 -54.11 13.06 21.65 0.28 -53.82 16 19 Si 0.95 45.27 29.55 68.60 2.03 47.30 16 20 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 21 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 22 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 23 C -0.15 -4.96 7.28 31.12 0.23 -4.73 16 24 C -0.12 -3.48 7.98 31.12 0.25 -3.23 16 25 C -0.13 -3.68 7.39 31.21 0.23 -3.45 16 26 H 0.05 1.81 6.94 -2.39 -0.02 1.79 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.03 1.37 4.97 -2.39 -0.01 1.36 16 29 H 0.07 2.20 6.85 -2.38 -0.02 2.18 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 2.77 5.82 -2.39 -0.01 2.75 16 34 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 35 H 0.41 14.96 7.84 -92.70 -0.73 14.23 16 36 H 0.07 2.31 7.88 -2.39 -0.02 2.29 16 37 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.38 18.11 7.88 -92.70 -0.73 17.38 16 39 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 40 H 0.09 2.59 8.10 -2.38 -0.02 2.57 16 41 H 0.05 1.82 7.82 -2.39 -0.02 1.80 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 45 H 0.10 2.47 7.93 -2.39 -0.02 2.45 16 Total: -1.00 -60.94 354.50 2.13 -58.81 By element: Atomic # 1 Polarization: 47.07 SS G_CDS: -0.48 Total: 46.60 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 4.14 Total: -14.91 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -3.52 Total: -113.94 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.04 Total: -23.85 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -60.94 2.13 -58.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700142180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.088 kcal (2) G-P(sol) polarization free energy of solvation -60.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds