Wall clock time and date at job start Tue Mar 31 2020 02:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50697 * 120.00263 * 2 1 4 4 C 1.32997 * 119.99773 * 180.02562 * 2 1 3 5 5 C 1.47103 * 120.00076 * 359.60841 * 4 2 1 6 6 O 1.21618 * 119.99846 * 1.66761 * 5 4 2 7 7 N 1.34772 * 120.00249 * 181.66276 * 5 4 2 8 8 C 1.46496 * 120.00138 * 180.02562 * 7 5 4 9 9 H 1.09006 * 109.45946 * 325.02786 * 8 7 5 10 10 C 1.53040 * 109.46096 * 85.00266 * 8 7 5 11 11 C 1.53195 * 109.31231 * 181.38506 * 10 8 7 12 12 N 1.46921 * 108.77730 * 305.36742 * 11 10 8 13 13 C 1.36938 * 120.63014 * 233.58628 * 12 11 10 14 14 H 1.07998 * 120.00322 * 149.39968 * 13 12 11 15 15 C 1.38813 * 120.00122 * 329.40776 * 13 12 11 16 16 N 1.31620 * 119.99798 * 342.54907 * 15 13 12 17 17 Si 1.86799 * 120.00280 * 162.54792 * 15 13 12 18 18 H 1.48500 * 109.46982 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47028 * 300.00012 * 17 15 13 20 20 H 1.48497 * 109.47042 * 60.00079 * 17 15 13 21 21 C 1.46929 * 118.74239 * 53.85841 * 12 11 10 22 22 C 1.53048 * 109.46228 * 205.07131 * 8 7 5 23 23 C 1.53000 * 109.49336 * 298.56921 * 22 8 7 24 24 C 1.53005 * 109.49621 * 58.65937 * 22 8 7 25 25 H 1.09000 * 109.47608 * 237.09687 * 1 2 3 26 26 H 1.09003 * 109.47151 * 357.09216 * 1 2 3 27 27 H 1.09002 * 109.47802 * 117.09035 * 1 2 3 28 28 H 1.09001 * 109.46799 * 239.99940 * 3 2 1 29 29 H 1.08997 * 109.47281 * 359.97438 * 3 2 1 30 30 H 1.08994 * 109.47452 * 120.00453 * 3 2 1 31 31 H 1.07999 * 120.00272 * 179.61648 * 4 2 1 32 32 H 0.97006 * 119.99909 * 0.02562 * 7 5 4 33 33 H 1.08997 * 109.49638 * 61.43180 * 10 8 7 34 34 H 1.08998 * 109.52013 * 301.35252 * 10 8 7 35 35 H 1.09000 * 109.58613 * 185.57766 * 11 10 8 36 36 H 1.09001 * 109.70087 * 65.22317 * 11 10 8 37 37 H 0.97008 * 119.99872 * 353.80513 * 16 15 13 38 38 H 1.08992 * 109.58457 * 65.92848 * 21 12 11 39 39 H 1.09001 * 109.58556 * 186.35659 * 21 12 11 40 40 H 1.08993 * 109.47366 * 59.99954 * 23 22 8 41 41 H 1.08997 * 109.46889 * 180.02562 * 23 22 8 42 42 H 1.09002 * 109.47080 * 299.99276 * 23 22 8 43 43 H 1.09005 * 109.46661 * 60.00755 * 24 22 8 44 44 H 1.08992 * 109.46677 * 179.97438 * 24 22 8 45 45 H 1.08998 * 109.47135 * 300.00875 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4364 -2.4257 0.0076 6 8 0.2204 -2.4260 -0.0158 7 7 2.1099 -3.5926 0.0410 8 6 1.3774 -4.8613 0.0485 9 1 0.4551 -4.7447 0.6177 10 6 1.0418 -5.2648 -1.3891 11 6 0.2460 -6.5738 -1.3752 12 7 1.0085 -7.5828 -0.6276 13 6 1.2926 -8.7994 -1.1883 14 1 2.1970 -9.3223 -0.9144 15 6 0.4183 -9.3606 -2.1089 16 7 -0.8194 -8.9210 -2.1936 17 14 0.9983 -10.7395 -3.2276 18 1 -0.1175 -11.1621 -4.1117 19 1 2.1332 -10.2601 -4.0567 20 1 1.4402 -11.8930 -2.4033 21 6 1.4551 -7.2642 0.7355 22 6 2.2421 -5.9455 0.6959 23 6 3.5213 -6.1344 -0.1221 24 6 2.6044 -5.5259 2.1220 25 1 -0.3634 -0.5582 0.8628 26 1 -0.3633 1.0264 0.0521 27 1 -0.3635 -0.4680 -0.9149 28 1 2.8872 1.3627 -0.8900 29 1 1.5523 2.1336 -0.0005 30 1 2.8872 1.3628 0.8899 31 1 3.2519 -1.1519 -0.0068 32 1 3.0798 -3.5924 0.0600 33 1 1.9644 -5.4058 -1.9521 34 1 0.4458 -4.4816 -1.8575 35 1 0.0899 -6.9173 -2.3978 36 1 -0.7180 -6.4126 -0.8927 37 1 -1.1474 -8.2692 -1.5544 38 1 0.5887 -7.1565 1.3880 39 1 2.0970 -8.0635 1.1058 40 1 4.0760 -5.1966 -0.1508 41 1 4.1366 -6.9070 0.3390 42 1 3.2623 -6.4347 -1.1374 43 1 1.6926 -5.3930 2.7043 44 1 3.2198 -6.2986 2.5826 45 1 3.1583 -4.5876 2.0950 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700289059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:15 Heat of formation + Delta-G solvation = -14.236530 kcal Electronic energy + Delta-G solvation = -23250.686004 eV Core-core repulsion = 20075.546025 eV Total energy + Delta-G solvation = -3175.139979 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.08096 -38.41229 -35.57176 -34.73663 -33.13203 -31.34357 -29.95909 -28.12566 -27.71192 -26.93932 -25.70407 -24.80934 -22.56353 -20.79387 -20.44033 -19.13671 -17.76877 -17.39882 -16.79042 -15.59378 -14.90755 -14.47709 -14.35147 -14.24744 -14.00158 -13.86751 -13.56622 -13.49527 -13.34707 -12.81565 -12.50792 -12.47905 -12.24691 -11.97465 -11.81829 -11.65730 -11.56254 -11.28086 -10.95830 -10.90244 -10.68476 -10.54877 -10.29013 -10.08344 -9.89934 -9.79520 -9.40845 -9.23830 -9.14404 -8.55360 -8.37109 -6.82998 -5.97449 -3.25383 1.37026 3.46783 3.49827 3.51000 3.53790 3.71543 4.60596 4.66193 4.71712 5.02716 5.11664 5.19300 5.25955 5.30407 5.35970 5.43231 5.53180 5.55675 5.62620 5.79363 5.83376 5.84819 5.91430 6.03115 6.05556 6.10839 6.21855 6.30391 6.36300 6.39711 6.43020 6.48536 6.52165 6.60568 6.72990 6.76825 6.88996 6.96123 7.13885 7.25838 7.82588 8.02986 8.51893 8.62382 9.14963 9.87528 10.32503 11.27993 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027555 B = 0.004227 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.891673 B = 6622.115332 C = 7076.946952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.039 4.039 3 C -0.126 4.126 4 C -0.234 4.234 5 C 0.540 3.460 6 O -0.543 6.543 7 N -0.719 5.719 8 C 0.165 3.835 9 H 0.079 0.921 10 C -0.144 4.144 11 C 0.152 3.848 12 N -0.597 5.597 13 C -0.344 4.344 14 H 0.055 0.945 15 C -0.026 4.026 16 N -0.924 5.924 17 Si 1.069 2.931 18 H -0.285 1.285 19 H -0.294 1.294 20 H -0.293 1.293 21 C 0.162 3.838 22 C -0.089 4.089 23 C -0.130 4.130 24 C -0.136 4.136 25 H 0.083 0.917 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.394 0.606 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.018 0.982 37 H 0.271 0.729 38 H 0.018 0.982 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.896 16.373 5.749 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.041 4.041 3 C -0.182 4.182 4 C -0.255 4.255 5 C 0.329 3.671 6 O -0.423 6.423 7 N -0.369 5.369 8 C 0.061 3.939 9 H 0.097 0.903 10 C -0.184 4.184 11 C 0.026 3.974 12 N -0.320 5.320 13 C -0.473 4.473 14 H 0.073 0.927 15 C -0.228 4.228 16 N -0.565 5.565 17 Si 0.899 3.101 18 H -0.211 1.211 19 H -0.221 1.221 20 H -0.221 1.221 21 C 0.035 3.965 22 C -0.092 4.092 23 C -0.187 4.187 24 C -0.194 4.194 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.139 0.861 32 H 0.229 0.771 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.036 0.964 37 H 0.083 0.917 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.581 15.325 4.451 17.667 hybrid contribution 1.143 0.969 1.366 2.028 sum 8.723 16.294 5.818 19.376 Atomic orbital electron populations 1.21064 0.90738 1.00767 1.04569 1.22545 0.96978 0.94343 0.90267 1.21009 1.00252 0.94294 1.02676 1.22406 0.99881 0.92382 1.10830 1.18524 0.87521 0.84324 0.76745 1.90776 1.13695 1.87690 1.50176 1.46197 1.10041 1.05980 1.74689 1.20918 0.94693 0.80944 0.97319 0.90281 1.22502 1.01190 0.99368 0.95354 1.20967 0.91912 0.86254 0.98306 1.44096 1.64865 1.13109 1.09913 1.19974 1.04371 0.96483 1.26479 0.92734 1.25919 0.93582 1.01786 1.01465 1.70774 1.14161 1.32406 1.39144 0.83457 0.75056 0.75309 0.76249 1.21097 1.22100 1.22059 1.20997 0.95213 0.92513 0.87796 1.21424 0.96435 0.97092 0.94237 1.21766 0.95586 0.99353 1.02005 1.21795 1.00998 1.00395 0.96183 0.89818 0.93244 0.89945 0.90744 0.91286 0.90777 0.86081 0.77130 0.91989 0.92799 0.89948 0.96383 0.91749 0.96452 0.92279 0.94652 0.93162 0.90686 0.93034 0.92757 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 8.34 36.00 0.30 -1.05 16 2 C -0.04 -0.42 6.11 -101.17 -0.62 -1.04 16 3 C -0.13 -0.89 10.07 36.00 0.36 -0.53 16 4 C -0.23 -2.72 9.67 -37.80 -0.37 -3.08 16 5 C 0.54 8.22 7.70 -12.67 -0.10 8.12 16 6 O -0.54 -10.07 12.73 5.26 0.07 -10.01 16 7 N -0.72 -10.44 4.28 -54.94 -0.24 -10.68 16 8 C 0.17 2.90 1.57 -67.89 -0.11 2.79 16 9 H 0.08 1.58 7.57 -51.93 -0.39 1.19 16 10 C -0.14 -2.88 5.31 -26.61 -0.14 -3.02 16 11 C 0.15 3.65 4.57 -3.71 -0.02 3.63 16 12 N -0.60 -14.70 2.28 -172.06 -0.39 -15.09 16 13 C -0.34 -9.43 9.54 -15.06 -0.14 -9.58 16 14 H 0.05 1.49 7.89 -52.49 -0.41 1.08 16 15 C -0.03 -0.73 4.88 -17.43 -0.09 -0.82 16 16 N -0.92 -27.90 12.40 55.49 0.69 -27.21 16 17 Si 1.07 25.28 29.95 -169.99 -5.09 20.19 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.16 3.36 5.24 -3.49 -0.02 3.34 16 22 C -0.09 -1.49 0.56 -154.16 -0.09 -1.58 16 23 C -0.13 -2.07 7.84 37.16 0.29 -1.78 16 24 C -0.14 -1.89 8.31 37.16 0.31 -1.58 16 25 H 0.08 1.13 7.05 -51.93 -0.37 0.76 16 26 H 0.05 0.45 7.70 -51.93 -0.40 0.05 16 27 H 0.08 1.12 7.38 -51.93 -0.38 0.74 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.43 7.70 -51.93 -0.40 0.03 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.39 4.78 6.65 -40.82 -0.27 4.51 16 33 H 0.06 1.24 6.34 -51.93 -0.33 0.91 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.08 2.22 6.27 -51.93 -0.33 1.89 16 36 H 0.02 0.46 7.73 -51.93 -0.40 0.06 16 37 H 0.27 8.24 6.14 -40.82 -0.25 7.99 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 40 H 0.03 0.46 6.58 -51.93 -0.34 0.12 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.42 5.97 -51.93 -0.31 1.11 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.60 7.36 -51.93 -0.38 0.21 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -31.26 343.97 -7.76 -39.02 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.56 Total: 4.77 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.42 Total: -6.17 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.06 Total: -52.98 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.09 Total: 20.19 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.26 -7.76 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700289059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.779 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds