Wall clock time and date at job start Tue Mar 31 2020 02:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50697 * 120.00263 * 2 1 4 4 C 1.32997 * 119.99773 * 180.02562 * 2 1 3 5 5 C 1.47103 * 120.00076 * 359.60841 * 4 2 1 6 6 O 1.21618 * 119.99846 * 1.66761 * 5 4 2 7 7 N 1.34772 * 120.00249 * 181.66276 * 5 4 2 8 8 C 1.46496 * 120.00138 * 180.02562 * 7 5 4 9 9 H 1.09006 * 109.45946 * 325.02786 * 8 7 5 10 10 C 1.53040 * 109.46096 * 85.00266 * 8 7 5 11 11 C 1.53195 * 109.31231 * 181.38506 * 10 8 7 12 12 N 1.46921 * 108.77730 * 305.36742 * 11 10 8 13 13 C 1.36938 * 120.63014 * 233.58628 * 12 11 10 14 14 H 1.07998 * 120.00322 * 149.39968 * 13 12 11 15 15 C 1.38813 * 120.00122 * 329.40776 * 13 12 11 16 16 N 1.31620 * 119.99798 * 342.54907 * 15 13 12 17 17 Si 1.86799 * 120.00280 * 162.54792 * 15 13 12 18 18 H 1.48500 * 109.46982 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47028 * 300.00012 * 17 15 13 20 20 H 1.48497 * 109.47042 * 60.00079 * 17 15 13 21 21 C 1.46929 * 118.74239 * 53.85841 * 12 11 10 22 22 C 1.53048 * 109.46228 * 205.07131 * 8 7 5 23 23 C 1.53000 * 109.49336 * 298.56921 * 22 8 7 24 24 C 1.53005 * 109.49621 * 58.65937 * 22 8 7 25 25 H 1.09000 * 109.47608 * 237.09687 * 1 2 3 26 26 H 1.09003 * 109.47151 * 357.09216 * 1 2 3 27 27 H 1.09002 * 109.47802 * 117.09035 * 1 2 3 28 28 H 1.09001 * 109.46799 * 239.99940 * 3 2 1 29 29 H 1.08997 * 109.47281 * 359.97438 * 3 2 1 30 30 H 1.08994 * 109.47452 * 120.00453 * 3 2 1 31 31 H 1.07999 * 120.00272 * 179.61648 * 4 2 1 32 32 H 0.97006 * 119.99909 * 0.02562 * 7 5 4 33 33 H 1.08997 * 109.49638 * 61.43180 * 10 8 7 34 34 H 1.08998 * 109.52013 * 301.35252 * 10 8 7 35 35 H 1.09000 * 109.58613 * 185.57766 * 11 10 8 36 36 H 1.09001 * 109.70087 * 65.22317 * 11 10 8 37 37 H 0.97008 * 119.99872 * 353.80513 * 16 15 13 38 38 H 1.08992 * 109.58457 * 65.92848 * 21 12 11 39 39 H 1.09001 * 109.58556 * 186.35659 * 21 12 11 40 40 H 1.08993 * 109.47366 * 59.99954 * 23 22 8 41 41 H 1.08997 * 109.46889 * 180.02562 * 23 22 8 42 42 H 1.09002 * 109.47080 * 299.99276 * 23 22 8 43 43 H 1.09005 * 109.46661 * 60.00755 * 24 22 8 44 44 H 1.08992 * 109.46677 * 179.97438 * 24 22 8 45 45 H 1.08998 * 109.47135 * 300.00875 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4364 -2.4257 0.0076 6 8 0.2204 -2.4260 -0.0158 7 7 2.1099 -3.5926 0.0410 8 6 1.3774 -4.8613 0.0485 9 1 0.4551 -4.7447 0.6177 10 6 1.0418 -5.2648 -1.3891 11 6 0.2460 -6.5738 -1.3752 12 7 1.0085 -7.5828 -0.6276 13 6 1.2926 -8.7994 -1.1883 14 1 2.1970 -9.3223 -0.9144 15 6 0.4183 -9.3606 -2.1089 16 7 -0.8194 -8.9210 -2.1936 17 14 0.9983 -10.7395 -3.2276 18 1 -0.1175 -11.1621 -4.1117 19 1 2.1332 -10.2601 -4.0567 20 1 1.4402 -11.8930 -2.4033 21 6 1.4551 -7.2642 0.7355 22 6 2.2421 -5.9455 0.6959 23 6 3.5213 -6.1344 -0.1221 24 6 2.6044 -5.5259 2.1220 25 1 -0.3634 -0.5582 0.8628 26 1 -0.3633 1.0264 0.0521 27 1 -0.3635 -0.4680 -0.9149 28 1 2.8872 1.3627 -0.8900 29 1 1.5523 2.1336 -0.0005 30 1 2.8872 1.3628 0.8899 31 1 3.2519 -1.1519 -0.0068 32 1 3.0798 -3.5924 0.0600 33 1 1.9644 -5.4058 -1.9521 34 1 0.4458 -4.4816 -1.8575 35 1 0.0899 -6.9173 -2.3978 36 1 -0.7180 -6.4126 -0.8927 37 1 -1.1474 -8.2692 -1.5544 38 1 0.5887 -7.1565 1.3880 39 1 2.0970 -8.0635 1.1058 40 1 4.0760 -5.1966 -0.1508 41 1 4.1366 -6.9070 0.3390 42 1 3.2623 -6.4347 -1.1374 43 1 1.6926 -5.3930 2.7043 44 1 3.2198 -6.2986 2.5826 45 1 3.1583 -4.5876 2.0950 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700289059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:14 Heat of formation + Delta-G solvation = -32.993132 kcal Electronic energy + Delta-G solvation = -23251.499351 eV Core-core repulsion = 20075.546025 eV Total energy + Delta-G solvation = -3175.953326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43658 -39.83477 -36.86465 -36.15139 -34.56463 -33.18637 -31.73126 -29.04365 -28.60245 -28.21149 -27.29259 -26.64281 -24.21216 -22.39951 -21.91321 -20.32123 -19.52633 -18.99047 -17.93991 -16.95992 -16.24034 -16.07596 -15.91212 -15.57116 -15.43904 -15.31507 -15.04022 -14.86213 -14.47720 -14.20731 -13.93618 -13.55786 -13.35718 -13.25079 -12.92819 -12.77757 -12.71568 -12.67133 -12.55329 -12.46101 -12.33725 -12.31385 -11.92651 -11.78953 -11.57480 -11.41550 -11.13980 -10.58703 -10.51454 -10.23456 -9.77236 -8.93004 -8.18039 -5.45662 0.44321 1.58080 1.66455 1.84375 2.29186 2.35551 2.66199 3.26653 3.48765 3.61580 3.82825 3.87246 3.94153 3.96496 4.24365 4.29530 4.32108 4.49300 4.54470 4.58861 4.70945 4.72089 4.74870 4.81301 4.84527 4.89646 4.90990 4.93525 5.02534 5.06662 5.11472 5.13723 5.19012 5.20401 5.26858 5.34901 5.51412 5.58694 5.61084 5.66687 5.84593 6.39893 6.68669 7.04529 7.36142 7.76326 8.22594 9.03663 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027555 B = 0.004227 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.891673 B = 6622.115332 C = 7076.946952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.030 4.030 3 C -0.122 4.122 4 C -0.245 4.245 5 C 0.531 3.469 6 O -0.586 6.586 7 N -0.706 5.706 8 C 0.178 3.822 9 H 0.050 0.950 10 C -0.128 4.128 11 C 0.163 3.837 12 N -0.610 5.610 13 C -0.344 4.344 14 H 0.058 0.942 15 C -0.082 4.082 16 N -0.955 5.955 17 Si 1.120 2.880 18 H -0.296 1.296 19 H -0.277 1.277 20 H -0.274 1.274 21 C 0.157 3.843 22 C -0.078 4.078 23 C -0.124 4.124 24 C -0.129 4.129 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.156 0.844 32 H 0.411 0.589 33 H 0.067 0.933 34 H 0.044 0.956 35 H 0.047 0.953 36 H -0.008 1.008 37 H 0.254 0.746 38 H 0.005 0.995 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.358 18.247 6.537 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.032 4.032 3 C -0.178 4.178 4 C -0.266 4.266 5 C 0.323 3.677 6 O -0.469 6.469 7 N -0.358 5.358 8 C 0.073 3.927 9 H 0.069 0.931 10 C -0.168 4.168 11 C 0.036 3.964 12 N -0.334 5.334 13 C -0.473 4.473 14 H 0.076 0.924 15 C -0.277 4.277 16 N -0.598 5.598 17 Si 0.944 3.056 18 H -0.222 1.222 19 H -0.203 1.203 20 H -0.200 1.200 21 C 0.031 3.969 22 C -0.080 4.080 23 C -0.181 4.181 24 C -0.186 4.186 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.174 0.826 32 H 0.249 0.751 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.010 0.990 37 H 0.064 0.936 38 H 0.023 0.977 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.106 17.229 5.276 21.167 hybrid contribution -0.006 0.448 1.173 1.256 sum 11.100 17.678 6.449 21.847 Atomic orbital electron populations 1.21017 0.92311 1.01690 1.02314 1.22889 0.96239 0.95980 0.88051 1.21074 1.00473 0.92123 1.04112 1.22449 1.01287 0.90341 1.12524 1.19268 0.87268 0.85561 0.75608 1.90775 1.15818 1.88293 1.52003 1.45930 1.10645 1.04602 1.74576 1.20494 0.94434 0.82916 0.94873 0.93134 1.22273 1.00380 0.96642 0.97533 1.20690 0.91672 0.88160 0.95887 1.44263 1.64893 1.12622 1.11584 1.20272 1.03967 0.97109 1.25991 0.92432 1.27342 0.93154 1.03889 1.03323 1.70897 1.15678 1.33607 1.39650 0.82791 0.74715 0.73314 0.74773 1.22208 1.20300 1.19963 1.21175 0.95233 0.95046 0.85444 1.21257 0.95984 0.94127 0.96656 1.21699 0.95178 1.01543 0.99687 1.21740 1.01276 1.02104 0.93507 0.92119 0.90613 0.92420 0.89277 0.90223 0.88998 0.82604 0.75134 0.91398 0.93707 0.93465 0.98976 0.93581 0.97719 0.92083 0.90962 0.92337 0.93932 0.93784 0.91209 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 8.34 71.23 0.59 -2.09 16 2 C -0.03 -0.55 6.11 -17.62 -0.11 -0.66 16 3 C -0.12 -1.22 10.07 71.23 0.72 -0.50 16 4 C -0.25 -5.01 9.67 23.43 0.23 -4.78 16 5 C 0.53 15.66 7.70 86.57 0.67 16.33 16 6 O -0.59 -22.34 12.73 -4.09 -0.05 -22.39 16 7 N -0.71 -19.26 4.28 -446.00 -1.91 -21.17 16 8 C 0.18 6.26 1.57 45.02 0.07 6.33 16 9 H 0.05 2.09 7.57 -2.38 -0.02 2.08 16 10 C -0.13 -5.30 5.31 30.67 0.16 -5.14 16 11 C 0.16 8.30 4.57 86.36 0.39 8.69 16 12 N -0.61 -31.08 2.28 -698.27 -1.59 -32.67 16 13 C -0.34 -19.22 9.54 84.03 0.80 -18.42 16 14 H 0.06 3.15 7.89 -2.91 -0.02 3.12 16 15 C -0.08 -4.74 4.88 84.86 0.41 -4.33 16 16 N -0.96 -60.34 12.40 21.65 0.27 -60.07 16 17 Si 1.12 51.57 29.95 68.60 2.05 53.62 16 18 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 C 0.16 6.59 5.24 86.51 0.45 7.04 16 22 C -0.08 -2.51 0.56 -51.95 -0.03 -2.54 16 23 C -0.12 -3.62 7.84 71.98 0.56 -3.06 16 24 C -0.13 -3.21 8.31 71.98 0.60 -2.61 16 25 H 0.06 1.68 7.05 -2.39 -0.02 1.66 16 26 H 0.08 1.28 7.70 -2.39 -0.02 1.26 16 27 H 0.06 1.61 7.38 -2.39 -0.02 1.59 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.66 7.70 -2.39 -0.02 0.64 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.41 8.42 6.65 -92.70 -0.62 7.80 16 33 H 0.07 2.73 6.34 -2.39 -0.02 2.71 16 34 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 2.72 6.27 -2.39 -0.01 2.70 16 36 H -0.01 -0.42 7.73 -2.39 -0.02 -0.44 16 37 H 0.25 16.45 6.14 -92.70 -0.57 15.88 16 38 H 0.00 0.21 8.14 -2.39 -0.02 0.20 16 39 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 40 H 0.07 1.57 6.58 -2.39 -0.02 1.56 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.04 1.54 5.97 -2.39 -0.01 1.53 16 43 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 1.50 7.36 -2.39 -0.02 1.49 16 Total: -1.00 -72.87 343.97 4.84 -68.03 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.55 Total: 20.39 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 5.53 Total: -5.74 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -3.24 Total: -113.91 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.05 Total: -22.39 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.62 kcal Total: -72.87 4.84 -68.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700289059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.033 kcal (2) G-P(sol) polarization free energy of solvation -72.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds