Wall clock time and date at job start Tue Mar 31 2020 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50709 * 119.99719 * 2 1 4 4 C 1.32994 * 120.00294 * 180.02562 * 2 1 3 5 5 C 1.47105 * 119.99945 * 351.36080 * 4 2 1 6 6 O 1.21613 * 119.99776 * 353.52531 * 5 4 2 7 7 N 1.34776 * 119.99998 * 173.52714 * 5 4 2 8 8 C 1.46491 * 119.99708 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46986 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.47289 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46990 * 184.02714 * 10 9 8 12 12 H 1.09000 * 109.87304 * 305.24195 * 11 10 9 13 13 C 1.54322 * 110.01132 * 66.34216 * 11 10 9 14 14 C 1.55162 * 102.94076 * 141.68293 * 13 11 10 15 15 C 1.54899 * 101.57958 * 324.49238 * 14 13 11 16 16 N 1.47019 * 109.87870 * 184.22659 * 11 10 9 17 17 C 1.36932 * 125.65314 * 61.45310 * 16 11 10 18 18 H 1.08001 * 120.00052 * 15.11564 * 17 16 11 19 19 C 1.38813 * 120.00223 * 195.12294 * 17 16 11 20 20 N 1.31616 * 119.99970 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99867 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47128 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46945 * 120.00228 * 21 19 17 24 24 H 1.48500 * 109.46842 * 239.99828 * 21 19 17 25 25 H 1.08998 * 109.46949 * 264.31745 * 1 2 3 26 26 H 1.09001 * 109.47490 * 24.31733 * 1 2 3 27 27 H 1.09007 * 109.46753 * 144.31831 * 1 2 3 28 28 H 1.08990 * 109.47039 * 269.99501 * 3 2 1 29 29 H 1.08997 * 109.47172 * 30.00487 * 3 2 1 30 30 H 1.09006 * 109.46417 * 149.99933 * 3 2 1 31 31 H 1.07998 * 120.00023 * 171.36270 * 4 2 1 32 32 H 0.96994 * 119.99730 * 0.02562 * 7 5 4 33 33 H 1.08999 * 109.47930 * 60.00161 * 8 7 5 34 34 H 1.09000 * 109.47133 * 299.99576 * 8 7 5 35 35 H 1.09007 * 109.47246 * 59.99989 * 9 8 7 36 36 H 1.09001 * 109.47544 * 299.99936 * 9 8 7 37 37 H 1.08993 * 109.46942 * 64.02788 * 10 9 8 38 38 H 1.09004 * 109.46840 * 304.02233 * 10 9 8 39 39 H 1.08995 * 110.72397 * 23.31434 * 13 11 10 40 40 H 1.09004 * 110.71664 * 260.04051 * 13 11 10 41 41 H 1.09003 * 110.99806 * 206.41766 * 14 13 11 42 42 H 1.09000 * 111.00689 * 82.56927 * 14 13 11 43 43 H 1.09003 * 110.36606 * 155.84992 * 15 14 13 44 44 H 1.08996 * 110.36936 * 278.06093 * 15 14 13 45 45 H 0.97004 * 119.99917 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4491 -2.4186 0.1903 6 8 0.2645 -2.4072 0.4654 7 7 2.0995 -3.5918 0.0602 8 6 1.3793 -4.8534 0.2497 9 6 2.3420 -6.0254 0.0479 10 6 1.5900 -7.3430 0.2464 11 6 2.5726 -8.5113 0.1438 12 1 3.1139 -8.4584 -0.8007 13 6 3.5680 -8.4692 1.3224 14 6 3.7442 -9.9682 1.6821 15 6 2.3213 -10.5207 1.4184 16 7 1.8449 -9.7858 0.2324 17 6 0.8835 -10.2183 -0.6414 18 1 0.7712 -9.7376 -1.6021 19 6 0.0529 -11.2743 -0.2925 20 7 0.1898 -11.8603 0.8780 21 14 -1.2592 -11.8638 -1.4844 22 1 -1.2078 -11.0448 -2.7220 23 1 -1.0161 -13.2891 -1.8229 24 1 -2.5973 -11.7258 -0.8553 25 1 -0.3633 -0.1018 1.0226 26 1 -0.3634 0.9365 -0.4232 27 1 -0.3633 -0.8348 -0.5995 28 1 2.4422 1.6198 -1.0276 29 1 1.6714 2.0648 0.5139 30 1 3.2129 1.1748 0.5139 31 1 3.2428 -1.1569 -0.1410 32 1 3.0443 -3.6008 -0.1588 33 1 0.5675 -4.9208 -0.4745 34 1 0.9697 -4.8899 1.2592 35 1 3.1536 -5.9579 0.7724 36 1 2.7520 -5.9892 -0.9614 37 1 0.8243 -7.4437 -0.5227 38 1 1.1203 -7.3486 1.2300 39 1 3.1472 -7.9177 2.1631 40 1 4.5171 -8.0334 1.0101 41 1 4.0223 -10.0886 2.7292 42 1 4.4754 -10.4436 1.0282 43 1 2.3620 -11.5900 1.2110 44 1 1.6740 -10.3252 2.2732 45 1 -0.3908 -12.5981 1.1220 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714506958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:10 Heat of formation + Delta-G solvation = -19.531429 kcal Electronic energy + Delta-G solvation = -21588.042066 eV Core-core repulsion = 18412.672484 eV Total energy + Delta-G solvation = -3175.369583 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.84104 -37.84090 -36.12575 -35.03310 -32.93038 -32.12497 -29.45922 -28.85046 -28.03364 -27.29079 -24.78206 -23.94777 -21.54536 -21.16362 -20.11893 -19.14121 -18.78087 -16.99446 -16.70626 -15.69803 -15.67004 -15.03673 -14.66260 -14.40369 -14.33948 -13.98582 -13.76603 -13.70458 -12.84253 -12.68153 -12.55170 -12.28854 -12.02858 -11.93908 -11.87432 -11.79300 -11.65831 -11.37512 -10.96896 -10.79553 -10.67275 -10.53197 -10.02953 -9.96921 -9.75932 -9.70186 -9.58640 -9.54020 -9.36987 -8.89864 -8.53780 -6.72176 -5.70854 -3.05667 1.18714 3.24101 3.26011 3.41446 3.47633 3.49626 4.51777 4.53747 4.58523 4.96927 5.06608 5.13859 5.19708 5.23966 5.39028 5.44300 5.48021 5.49733 5.64281 5.65870 5.66154 5.77866 5.89001 5.90280 6.02058 6.09415 6.15971 6.26431 6.31511 6.35003 6.38958 6.47042 6.52172 6.60902 6.74485 6.76295 7.00545 7.21959 7.54510 7.58570 7.68276 7.84577 8.25830 8.33905 9.24925 9.86533 10.56295 11.41839 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022758 B = 0.002979 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.017307 B = 9397.045031 C =10332.897018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.035 4.035 3 C -0.127 4.127 4 C -0.237 4.237 5 C 0.540 3.460 6 O -0.543 6.543 7 N -0.727 5.727 8 C 0.119 3.881 9 C -0.127 4.127 10 C -0.121 4.121 11 C 0.162 3.838 12 H 0.030 0.970 13 C -0.124 4.124 14 C -0.150 4.150 15 C 0.173 3.827 16 N -0.597 5.597 17 C -0.225 4.225 18 H 0.074 0.926 19 C -0.006 4.006 20 N -0.918 5.918 21 Si 0.908 3.092 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.290 1.290 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.399 0.601 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.024 0.976 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.153 21.341 -0.685 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.037 4.037 3 C -0.183 4.183 4 C -0.258 4.258 5 C 0.330 3.670 6 O -0.423 6.423 7 N -0.377 5.377 8 C -0.004 4.004 9 C -0.166 4.166 10 C -0.162 4.162 11 C 0.055 3.945 12 H 0.048 0.952 13 C -0.162 4.162 14 C -0.189 4.189 15 C 0.048 3.952 16 N -0.321 5.321 17 C -0.354 4.354 18 H 0.092 0.908 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.738 3.262 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.217 1.217 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.143 0.857 32 H 0.232 0.768 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.132 21.124 -0.499 22.301 hybrid contribution -0.209 -0.395 -0.656 0.793 sum 6.924 20.729 -1.155 21.886 Atomic orbital electron populations 1.21124 0.90889 1.02269 1.03703 1.22564 0.96924 0.94434 0.89728 1.21006 1.00085 0.94440 1.02817 1.22396 1.00283 0.92211 1.10878 1.18571 0.86856 0.84275 0.77327 1.90773 1.15560 1.87702 1.48267 1.46014 1.13656 1.06071 1.72003 1.21472 0.95371 0.81688 1.01917 1.21838 0.98423 0.94508 1.01810 1.22017 0.99398 0.92465 1.02277 1.20918 0.91505 0.86765 0.95357 0.95214 1.22584 0.98100 0.97138 0.98372 1.23011 1.00720 0.95751 0.99421 1.21388 0.87727 0.96960 0.89118 1.44547 1.44062 1.14486 1.28970 1.19005 1.07409 1.13581 0.95374 0.90800 1.24909 0.98800 0.99806 0.96753 1.69951 1.40500 1.25576 1.20443 0.86109 0.81793 0.78255 0.80028 1.20446 1.21813 1.21729 0.90228 0.92721 0.89451 0.90501 0.90871 0.91109 0.85737 0.76756 0.91532 0.91570 0.91685 0.91863 0.91692 0.92238 0.92043 0.92675 0.92573 0.92514 0.91428 0.95798 0.93808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 8.44 36.00 0.30 -0.93 16 2 C -0.03 -0.31 6.10 -101.16 -0.62 -0.93 16 3 C -0.13 -0.72 10.01 36.01 0.36 -0.36 16 4 C -0.24 -2.27 9.62 -37.80 -0.36 -2.64 16 5 C 0.54 6.97 7.59 -12.66 -0.10 6.88 16 6 O -0.54 -8.90 13.34 5.27 0.07 -8.83 16 7 N -0.73 -8.36 5.55 -61.50 -0.34 -8.70 16 8 C 0.12 1.61 5.67 -4.05 -0.02 1.59 16 9 C -0.13 -1.70 5.23 -26.73 -0.14 -1.84 16 10 C -0.12 -2.19 4.71 -26.73 -0.13 -2.31 16 11 C 0.16 3.26 3.17 -66.96 -0.21 3.05 16 12 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 13 C -0.12 -2.13 5.51 -24.89 -0.14 -2.27 16 14 C -0.15 -2.86 7.08 -24.59 -0.17 -3.03 16 15 C 0.17 4.23 5.40 -2.53 -0.01 4.22 16 16 N -0.60 -15.10 3.13 -162.58 -0.51 -15.61 16 17 C -0.23 -6.24 9.72 -15.06 -0.15 -6.39 16 18 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 19 C -0.01 -0.17 5.47 -17.43 -0.10 -0.27 16 20 N -0.92 -27.17 10.59 55.49 0.59 -26.58 16 21 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H 0.08 0.86 7.99 -51.93 -0.41 0.45 16 26 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.09 1.08 6.27 -51.93 -0.33 0.75 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 31 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.40 3.41 8.46 -40.82 -0.35 3.06 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.79 7.33 -51.93 -0.38 0.41 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.29 7.86 -51.93 -0.41 0.89 16 38 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 39 H 0.06 1.02 7.79 -51.93 -0.40 0.61 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.84 6.97 -51.93 -0.36 1.48 16 44 H 0.02 0.64 8.05 -51.93 -0.42 0.22 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -32.18 359.60 -9.37 -41.55 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.09 Total: 0.71 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.48 Total: -5.23 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.26 Total: -50.89 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.83 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.18 -9.37 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714506958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.018 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds