Wall clock time and date at job start Tue Mar 31 2020 02:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50709 * 119.99719 * 2 1 4 4 C 1.32994 * 120.00294 * 180.02562 * 2 1 3 5 5 C 1.47105 * 119.99945 * 351.36080 * 4 2 1 6 6 O 1.21613 * 119.99776 * 353.52531 * 5 4 2 7 7 N 1.34776 * 119.99998 * 173.52714 * 5 4 2 8 8 C 1.46491 * 119.99708 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46986 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.47289 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46990 * 184.02714 * 10 9 8 12 12 H 1.09000 * 109.87304 * 305.24195 * 11 10 9 13 13 C 1.54322 * 110.01132 * 66.34216 * 11 10 9 14 14 C 1.55162 * 102.94076 * 141.68293 * 13 11 10 15 15 C 1.54899 * 101.57958 * 324.49238 * 14 13 11 16 16 N 1.47019 * 109.87870 * 184.22659 * 11 10 9 17 17 C 1.36932 * 125.65314 * 61.45310 * 16 11 10 18 18 H 1.08001 * 120.00052 * 15.11564 * 17 16 11 19 19 C 1.38813 * 120.00223 * 195.12294 * 17 16 11 20 20 N 1.31616 * 119.99970 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99867 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47128 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46945 * 120.00228 * 21 19 17 24 24 H 1.48500 * 109.46842 * 239.99828 * 21 19 17 25 25 H 1.08998 * 109.46949 * 264.31745 * 1 2 3 26 26 H 1.09001 * 109.47490 * 24.31733 * 1 2 3 27 27 H 1.09007 * 109.46753 * 144.31831 * 1 2 3 28 28 H 1.08990 * 109.47039 * 269.99501 * 3 2 1 29 29 H 1.08997 * 109.47172 * 30.00487 * 3 2 1 30 30 H 1.09006 * 109.46417 * 149.99933 * 3 2 1 31 31 H 1.07998 * 120.00023 * 171.36270 * 4 2 1 32 32 H 0.96994 * 119.99730 * 0.02562 * 7 5 4 33 33 H 1.08999 * 109.47930 * 60.00161 * 8 7 5 34 34 H 1.09000 * 109.47133 * 299.99576 * 8 7 5 35 35 H 1.09007 * 109.47246 * 59.99989 * 9 8 7 36 36 H 1.09001 * 109.47544 * 299.99936 * 9 8 7 37 37 H 1.08993 * 109.46942 * 64.02788 * 10 9 8 38 38 H 1.09004 * 109.46840 * 304.02233 * 10 9 8 39 39 H 1.08995 * 110.72397 * 23.31434 * 13 11 10 40 40 H 1.09004 * 110.71664 * 260.04051 * 13 11 10 41 41 H 1.09003 * 110.99806 * 206.41766 * 14 13 11 42 42 H 1.09000 * 111.00689 * 82.56927 * 14 13 11 43 43 H 1.09003 * 110.36606 * 155.84992 * 15 14 13 44 44 H 1.08996 * 110.36936 * 278.06093 * 15 14 13 45 45 H 0.97004 * 119.99917 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4491 -2.4186 0.1903 6 8 0.2645 -2.4072 0.4654 7 7 2.0995 -3.5918 0.0602 8 6 1.3793 -4.8534 0.2497 9 6 2.3420 -6.0254 0.0479 10 6 1.5900 -7.3430 0.2464 11 6 2.5726 -8.5113 0.1438 12 1 3.1139 -8.4584 -0.8007 13 6 3.5680 -8.4692 1.3224 14 6 3.7442 -9.9682 1.6821 15 6 2.3213 -10.5207 1.4184 16 7 1.8449 -9.7858 0.2324 17 6 0.8835 -10.2183 -0.6414 18 1 0.7712 -9.7376 -1.6021 19 6 0.0529 -11.2743 -0.2925 20 7 0.1898 -11.8603 0.8780 21 14 -1.2592 -11.8638 -1.4844 22 1 -1.2078 -11.0448 -2.7220 23 1 -1.0161 -13.2891 -1.8229 24 1 -2.5973 -11.7258 -0.8553 25 1 -0.3633 -0.1018 1.0226 26 1 -0.3634 0.9365 -0.4232 27 1 -0.3633 -0.8348 -0.5995 28 1 2.4422 1.6198 -1.0276 29 1 1.6714 2.0648 0.5139 30 1 3.2129 1.1748 0.5139 31 1 3.2428 -1.1569 -0.1410 32 1 3.0443 -3.6008 -0.1588 33 1 0.5675 -4.9208 -0.4745 34 1 0.9697 -4.8899 1.2592 35 1 3.1536 -5.9579 0.7724 36 1 2.7520 -5.9892 -0.9614 37 1 0.8243 -7.4437 -0.5227 38 1 1.1203 -7.3486 1.2300 39 1 3.1472 -7.9177 2.1631 40 1 4.5171 -8.0334 1.0101 41 1 4.0223 -10.0886 2.7292 42 1 4.4754 -10.4436 1.0282 43 1 2.3620 -11.5900 1.2110 44 1 1.6740 -10.3252 2.2732 45 1 -0.3908 -12.5981 1.1220 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714506958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:09 Heat of formation + Delta-G solvation = -39.565514 kcal Electronic energy + Delta-G solvation = -21588.910810 eV Core-core repulsion = 18412.672484 eV Total energy + Delta-G solvation = -3176.238326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.83323 -39.48435 -37.08431 -36.01409 -34.68383 -33.65740 -31.26986 -30.08368 -28.66512 -28.37944 -26.61238 -25.48608 -22.79684 -22.15719 -21.87015 -20.75777 -19.63227 -18.68540 -17.88484 -16.98091 -16.76889 -16.67571 -16.04437 -15.72940 -15.63212 -15.16375 -14.79710 -14.62660 -14.22613 -13.87206 -13.71262 -13.57128 -13.33868 -13.24802 -13.09418 -12.98727 -12.76257 -12.67513 -12.63916 -12.38629 -12.19669 -11.96366 -11.85497 -11.67269 -11.54841 -11.31761 -11.14357 -10.67580 -10.64208 -10.24546 -9.79054 -8.77294 -7.86232 -5.21829 0.42457 1.43232 1.44529 1.54362 2.31138 2.32582 2.49479 3.32715 3.69626 3.84157 3.94961 3.96114 4.00734 4.18035 4.25189 4.32592 4.36191 4.43829 4.58996 4.62878 4.69175 4.75877 4.80796 4.82646 4.86017 4.92318 5.00158 5.03716 5.07397 5.14065 5.19076 5.24061 5.33677 5.47651 5.50673 5.52547 5.57289 5.66733 5.67625 5.71036 5.79763 6.27621 6.66959 7.12668 7.33353 7.82318 8.49808 9.25800 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022758 B = 0.002979 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.017307 B = 9397.045031 C =10332.897018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.030 4.030 3 C -0.123 4.123 4 C -0.246 4.246 5 C 0.530 3.470 6 O -0.589 6.589 7 N -0.714 5.714 8 C 0.126 3.874 9 C -0.107 4.107 10 C -0.112 4.112 11 C 0.151 3.849 12 H 0.037 0.963 13 C -0.111 4.111 14 C -0.137 4.137 15 C 0.174 3.826 16 N -0.619 5.619 17 C -0.230 4.230 18 H 0.076 0.924 19 C -0.067 4.067 20 N -0.950 5.950 21 Si 0.971 3.029 22 H -0.266 1.266 23 H -0.291 1.291 24 H -0.295 1.295 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.159 0.841 32 H 0.417 0.583 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.028 0.972 44 H -0.010 1.010 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.838 23.999 -1.421 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.032 4.032 3 C -0.179 4.179 4 C -0.267 4.267 5 C 0.321 3.679 6 O -0.472 6.472 7 N -0.366 5.366 8 C 0.002 3.998 9 C -0.145 4.145 10 C -0.152 4.152 11 C 0.045 3.955 12 H 0.055 0.945 13 C -0.149 4.149 14 C -0.175 4.175 15 C 0.049 3.951 16 N -0.344 5.344 17 C -0.359 4.359 18 H 0.094 0.906 19 C -0.260 4.260 20 N -0.599 5.599 21 Si 0.799 3.201 22 H -0.190 1.190 23 H -0.218 1.218 24 H -0.222 1.222 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.176 0.824 32 H 0.254 0.746 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.008 0.992 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.879 23.817 -1.259 25.815 hybrid contribution -1.065 -1.173 -0.440 1.644 sum 8.814 22.644 -1.699 24.358 Atomic orbital electron populations 1.21074 0.92389 1.02238 1.02446 1.22886 0.96252 0.96006 0.88080 1.21061 1.00290 0.92469 1.04087 1.22495 1.01661 0.90450 1.12098 1.19258 0.86543 0.85594 0.76473 1.90761 1.17673 1.88368 1.50396 1.45834 1.14407 1.04932 1.71448 1.21195 0.95234 0.83052 1.00335 1.21627 0.98021 0.91285 1.03586 1.21818 0.98681 0.94579 1.00140 1.21217 0.92046 0.85038 0.97159 0.94549 1.22582 0.99074 0.95987 0.97225 1.22882 0.96693 0.96723 1.01242 1.21196 0.90849 0.95196 0.87843 1.44867 1.43950 1.17005 1.28553 1.19330 1.07586 1.13083 0.95937 0.90650 1.25695 1.01185 1.00579 0.98520 1.70159 1.41373 1.26114 1.22238 0.85118 0.78796 0.77649 0.78493 1.19009 1.21809 1.22233 0.91658 0.90432 0.92321 0.88939 0.90011 0.89692 0.82394 0.74622 0.93648 0.93249 0.89139 0.90126 0.94532 0.94228 0.91221 0.88386 0.90108 0.91659 0.95309 0.99153 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.44 71.24 0.60 -1.86 16 2 C -0.03 -0.48 6.10 -17.61 -0.11 -0.58 16 3 C -0.12 -0.96 10.01 71.24 0.71 -0.24 16 4 C -0.25 -4.17 9.62 23.43 0.23 -3.94 16 5 C 0.53 13.28 7.59 86.57 0.66 13.94 16 6 O -0.59 -19.88 13.34 -4.07 -0.05 -19.93 16 7 N -0.71 -15.20 5.55 -466.73 -2.59 -17.79 16 8 C 0.13 3.36 5.67 86.38 0.49 3.85 16 9 C -0.11 -2.61 5.23 30.60 0.16 -2.45 16 10 C -0.11 -4.00 4.71 30.60 0.14 -3.85 16 11 C 0.15 5.88 3.17 45.34 0.14 6.03 16 12 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 13 C -0.11 -3.44 5.51 31.78 0.18 -3.27 16 14 C -0.14 -4.93 7.08 31.98 0.23 -4.70 16 15 C 0.17 8.75 5.40 86.85 0.47 9.22 16 16 N -0.62 -31.84 3.13 -668.28 -2.09 -33.93 16 17 C -0.23 -13.05 9.72 84.03 0.82 -12.23 16 18 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 19 C -0.07 -3.90 5.47 84.86 0.46 -3.43 16 20 N -0.95 -58.70 10.59 21.65 0.23 -58.47 16 21 Si 0.97 47.10 29.55 68.60 2.03 49.12 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 25 H 0.06 1.46 7.99 -2.39 -0.02 1.44 16 26 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 27 H 0.06 1.51 6.27 -2.38 -0.01 1.49 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 0.53 8.12 -2.39 -0.02 0.51 16 30 H 0.08 0.47 8.07 -2.38 -0.02 0.45 16 31 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.42 5.74 8.46 -92.71 -0.78 4.96 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 1.82 7.33 -2.38 -0.02 1.80 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.04 1.48 7.86 -2.39 -0.02 1.46 16 38 H 0.04 1.55 8.05 -2.39 -0.02 1.53 16 39 H 0.07 2.07 7.79 -2.39 -0.02 2.06 16 40 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.03 1.63 6.97 -2.39 -0.02 1.61 16 44 H -0.01 -0.53 8.05 -2.39 -0.02 -0.55 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -74.96 359.60 2.86 -72.10 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.16 Total: 12.43 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 5.18 Total: -3.53 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -4.45 Total: -110.19 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.05 Total: -19.93 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -74.96 2.86 -72.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714506958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.533 kcal (2) G-P(sol) polarization free energy of solvation -74.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds