Wall clock time and date at job start Tue Mar 31 2020 01:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47372 * 2 1 4 4 C 1.52997 * 109.47085 * 120.00241 * 2 1 3 5 5 H 1.09002 * 109.47016 * 184.99997 * 4 2 1 6 6 C 1.52997 * 109.47504 * 64.99737 * 4 2 1 7 7 N 1.46505 * 109.47212 * 184.99959 * 6 4 2 8 8 C 1.34771 * 119.99622 * 179.97438 * 7 6 4 9 9 O 1.21280 * 120.00597 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99622 * 179.97438 * 8 7 6 11 11 H 1.09004 * 109.63798 * 60.42553 * 10 8 7 12 12 C 1.53021 * 109.64408 * 300.00266 * 10 8 7 13 13 C 1.50073 * 110.14890 * 190.87652 * 12 10 8 14 14 C 1.29440 * 124.07304 * 17.13389 * 13 12 10 15 15 C 1.50074 * 124.07841 * 359.50607 * 14 13 12 16 16 C 1.53040 * 110.13463 * 17.17095 * 15 14 13 17 17 N 1.46503 * 109.46834 * 304.99499 * 4 2 1 18 18 C 1.36938 * 120.00424 * 275.00132 * 17 4 2 19 19 H 1.08006 * 119.99738 * 0.02562 * 18 17 4 20 20 C 1.38810 * 120.00380 * 179.97438 * 18 17 4 21 21 N 1.31620 * 119.99703 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00215 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46798 * 59.99873 * 22 20 18 24 24 H 1.48495 * 109.47116 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46974 * 300.00492 * 22 20 18 26 26 H 1.08999 * 109.46571 * 300.00226 * 1 2 3 27 27 H 1.09001 * 109.46985 * 59.99660 * 1 2 3 28 28 H 1.08995 * 109.47246 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47091 * 239.99766 * 2 1 3 30 30 H 1.08997 * 109.47204 * 59.99836 * 3 2 1 31 31 H 1.08997 * 109.47085 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.46774 * 299.99868 * 3 2 1 33 33 H 1.09002 * 109.47153 * 64.99951 * 6 4 2 34 34 H 1.09001 * 109.46832 * 305.00142 * 6 4 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 7 6 4 36 36 H 1.09001 * 109.35785 * 311.08881 * 12 10 8 37 37 H 1.09006 * 109.35715 * 70.81030 * 12 10 8 38 38 H 1.07998 * 117.96105 * 197.10885 * 13 12 10 39 39 H 1.07996 * 117.96501 * 179.52875 * 14 13 12 40 40 H 1.09000 * 109.35502 * 137.35582 * 15 14 13 41 41 H 1.08996 * 109.35487 * 256.95056 * 15 14 13 42 42 H 1.09003 * 109.63395 * 190.86275 * 16 15 14 43 43 H 1.08998 * 109.66492 * 70.22511 * 16 15 14 44 44 H 0.97007 * 119.99919 * 95.00541 * 17 4 2 45 45 H 0.97003 * 119.99850 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6444 1.2951 6 6 1.6353 -2.1955 1.1880 7 7 2.0184 -2.8594 2.4365 8 6 1.7587 -4.1704 2.6097 9 8 1.2083 -4.8008 1.7319 10 6 2.1534 -4.8535 3.8937 11 1 1.6441 -4.3790 4.7326 12 6 3.6679 -4.7509 4.0865 13 6 4.1077 -5.6439 5.2096 14 6 3.3924 -6.6091 5.6913 15 6 2.0188 -6.9634 5.2012 16 6 1.7724 -6.3379 3.8264 17 7 1.4559 -0.1036 2.4423 18 6 2.0442 1.0003 2.9997 19 1 2.9386 1.4158 2.5594 20 6 1.4905 1.5858 4.1299 21 7 0.4002 1.0797 4.6661 22 14 2.2926 3.0920 4.8897 23 1 2.3222 4.1927 3.8933 24 1 1.5134 3.5209 6.0788 25 1 3.6801 2.7594 5.3012 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6768 1.9563 0.8899 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 2.1408 -2.6766 0.3506 34 1 0.5563 -2.2706 1.0527 35 1 2.4583 -2.3551 3.1386 36 1 4.1704 -5.0520 3.1674 37 1 3.9331 -3.7201 4.3222 38 1 5.0819 -5.4707 5.6425 39 1 3.8097 -7.1959 6.4962 40 1 1.9305 -8.0472 5.1259 41 1 1.2763 -6.5904 5.9065 42 1 0.7189 -6.4342 3.5636 43 1 2.3869 -6.8403 3.0793 44 1 0.6524 -0.4766 2.8376 45 1 0.0134 1.4887 5.4561 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715516898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:55 Heat of formation + Delta-G solvation = -38.252753 kcal Electronic energy + Delta-G solvation = -22742.722026 eV Core-core repulsion = 19566.540625 eV Total energy + Delta-G solvation = -3176.181400 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.92620 -37.87304 -36.99456 -33.84256 -32.91277 -31.38142 -30.80728 -30.07489 -27.83914 -26.35435 -24.24009 -23.49789 -22.81231 -21.67562 -19.91755 -18.72922 -17.93344 -17.41530 -16.88150 -15.86153 -15.44128 -15.03388 -14.63496 -14.25218 -14.03325 -13.66513 -13.49014 -13.43300 -13.15175 -12.97940 -12.80878 -12.32144 -12.27972 -12.13718 -11.76038 -11.31136 -11.00579 -10.97314 -10.93579 -10.82871 -10.75030 -10.53874 -10.34345 -10.28149 -10.15870 -9.90419 -9.48453 -9.35043 -9.05092 -8.92975 -8.54864 -7.03116 -5.82670 -3.11347 2.23487 3.00311 3.38605 3.44301 3.45324 3.62791 4.53155 4.64494 4.67630 4.91922 5.20377 5.25301 5.29635 5.40572 5.43237 5.46423 5.52301 5.54216 5.69491 5.74147 5.83350 5.85162 5.87945 5.91168 5.97462 6.14306 6.20249 6.24745 6.31709 6.34225 6.44293 6.56045 6.59067 6.65789 6.72207 6.83283 6.88256 6.98862 7.08210 7.29950 7.65056 8.00088 8.34811 8.63625 9.46880 10.02049 10.38310 11.39075 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.004977 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.345778 B = 5624.392069 C = 6875.804966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.168 3.832 5 H 0.052 0.948 6 C 0.112 3.888 7 N -0.711 5.711 8 C 0.515 3.485 9 O -0.556 6.556 10 C -0.108 4.108 11 H 0.100 0.900 12 C -0.082 4.082 13 C -0.150 4.150 14 C -0.159 4.159 15 C -0.093 4.093 16 C -0.097 4.097 17 N -0.717 5.717 18 C -0.236 4.236 19 H 0.072 0.928 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.902 3.098 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.032 0.968 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.410 0.590 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 -11.454 -1.740 12.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.057 3.943 5 H 0.070 0.930 6 C -0.013 4.013 7 N -0.362 5.362 8 C 0.301 3.699 9 O -0.435 6.435 10 C -0.129 4.129 11 H 0.118 0.882 12 C -0.120 4.120 13 C -0.168 4.168 14 C -0.177 4.177 15 C -0.129 4.129 16 C -0.135 4.135 17 N -0.359 5.359 18 C -0.367 4.367 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.733 3.267 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.214 1.214 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.246 0.754 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.220 0.780 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.924 -11.734 -2.297 12.931 hybrid contribution 0.393 1.149 0.968 1.553 sum 5.317 -10.584 -1.329 11.919 Atomic orbital electron populations 1.21767 0.95699 1.00613 1.01670 1.21612 0.96186 0.97129 0.97963 1.21841 0.99512 0.96418 1.02120 1.20545 0.96799 0.88510 0.88429 0.92958 1.21719 1.00495 0.93412 0.85657 1.46018 1.60778 1.09439 1.19963 1.20521 0.78570 0.82176 0.88668 1.90646 1.43315 1.65213 1.44331 1.21386 0.97490 0.97370 0.96687 0.88169 1.20423 0.93629 1.00062 0.97850 1.22005 0.99865 0.96812 0.98149 1.22063 0.96685 0.98479 1.00455 1.20503 0.94946 1.00647 0.96850 1.21395 1.02542 0.93017 0.96539 1.42413 1.31889 1.33144 1.28449 1.19151 1.07056 1.03887 1.06655 0.91030 1.24705 0.97799 0.99464 0.98658 1.69647 1.21910 1.42315 1.23888 0.86358 0.78405 0.83246 0.78692 1.21321 1.21840 1.21368 0.90995 0.94451 0.93806 0.93314 0.89576 0.94185 0.94883 0.92151 0.91554 0.75376 0.90498 0.90082 0.87727 0.88081 0.90965 0.90745 0.90740 0.91366 0.78035 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.74 37.16 0.32 -2.09 16 2 C -0.11 -1.82 2.74 -90.62 -0.25 -2.07 16 3 C -0.14 -2.50 8.46 37.16 0.31 -2.18 16 4 C 0.17 3.03 2.29 -67.93 -0.16 2.88 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.89 5.10 -4.04 -0.02 1.87 16 7 N -0.71 -11.69 5.29 -60.29 -0.32 -12.01 16 8 C 0.51 8.46 7.14 -10.99 -0.08 8.39 16 9 O -0.56 -10.80 15.90 5.56 0.09 -10.71 16 10 C -0.11 -1.44 2.58 -91.56 -0.24 -1.68 16 11 H 0.10 1.34 8.13 -51.93 -0.42 0.92 16 12 C -0.08 -0.97 5.27 -28.18 -0.15 -1.12 16 13 C -0.15 -1.60 9.80 -35.90 -0.35 -1.96 16 14 C -0.16 -1.62 9.80 -35.90 -0.35 -1.97 16 15 C -0.09 -0.94 6.12 -28.16 -0.17 -1.11 16 16 C -0.10 -1.20 4.70 -26.51 -0.12 -1.32 16 17 N -0.72 -15.73 3.53 -53.42 -0.19 -15.92 16 18 C -0.24 -5.83 7.75 -15.06 -0.12 -5.94 16 19 H 0.07 1.73 7.32 -52.48 -0.38 1.35 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -26.23 13.06 55.49 0.72 -25.50 16 22 Si 0.90 21.19 29.55 -169.99 -5.02 16.17 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H 0.07 1.45 7.47 -51.93 -0.39 1.06 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.72 6.46 -51.93 -0.34 0.38 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.79 5.99 -51.93 -0.31 1.48 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.21 6.34 -51.93 -0.33 0.88 16 35 H 0.41 6.79 7.81 -40.82 -0.32 6.47 16 36 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 38 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.10 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 43 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 44 H 0.39 9.34 7.80 -40.82 -0.32 9.02 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -27.98 353.48 -8.68 -36.66 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -7.83 Total: 14.64 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -1.46 Total: -8.66 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.22 Total: -53.43 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.98 -8.68 -36.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715516898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.588 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds