Wall clock time and date at job start Tue Mar 31 2020 01:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47372 * 2 1 4 4 C 1.52997 * 109.47085 * 120.00241 * 2 1 3 5 5 H 1.09002 * 109.47016 * 184.99997 * 4 2 1 6 6 C 1.52997 * 109.47504 * 64.99737 * 4 2 1 7 7 N 1.46505 * 109.47212 * 184.99959 * 6 4 2 8 8 C 1.34771 * 119.99622 * 179.97438 * 7 6 4 9 9 O 1.21280 * 120.00597 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99622 * 179.97438 * 8 7 6 11 11 H 1.09004 * 109.63798 * 60.42553 * 10 8 7 12 12 C 1.53021 * 109.64408 * 300.00266 * 10 8 7 13 13 C 1.50073 * 110.14890 * 190.87652 * 12 10 8 14 14 C 1.29440 * 124.07304 * 17.13389 * 13 12 10 15 15 C 1.50074 * 124.07841 * 359.50607 * 14 13 12 16 16 C 1.53040 * 110.13463 * 17.17095 * 15 14 13 17 17 N 1.46503 * 109.46834 * 304.99499 * 4 2 1 18 18 C 1.36938 * 120.00424 * 275.00132 * 17 4 2 19 19 H 1.08006 * 119.99738 * 0.02562 * 18 17 4 20 20 C 1.38810 * 120.00380 * 179.97438 * 18 17 4 21 21 N 1.31620 * 119.99703 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00215 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46798 * 59.99873 * 22 20 18 24 24 H 1.48495 * 109.47116 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46974 * 300.00492 * 22 20 18 26 26 H 1.08999 * 109.46571 * 300.00226 * 1 2 3 27 27 H 1.09001 * 109.46985 * 59.99660 * 1 2 3 28 28 H 1.08995 * 109.47246 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47091 * 239.99766 * 2 1 3 30 30 H 1.08997 * 109.47204 * 59.99836 * 3 2 1 31 31 H 1.08997 * 109.47085 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.46774 * 299.99868 * 3 2 1 33 33 H 1.09002 * 109.47153 * 64.99951 * 6 4 2 34 34 H 1.09001 * 109.46832 * 305.00142 * 6 4 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 7 6 4 36 36 H 1.09001 * 109.35785 * 311.08881 * 12 10 8 37 37 H 1.09006 * 109.35715 * 70.81030 * 12 10 8 38 38 H 1.07998 * 117.96105 * 197.10885 * 13 12 10 39 39 H 1.07996 * 117.96501 * 179.52875 * 14 13 12 40 40 H 1.09000 * 109.35502 * 137.35582 * 15 14 13 41 41 H 1.08996 * 109.35487 * 256.95056 * 15 14 13 42 42 H 1.09003 * 109.63395 * 190.86275 * 16 15 14 43 43 H 1.08998 * 109.66492 * 70.22511 * 16 15 14 44 44 H 0.97007 * 119.99919 * 95.00541 * 17 4 2 45 45 H 0.97003 * 119.99850 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6444 1.2951 6 6 1.6353 -2.1955 1.1880 7 7 2.0184 -2.8594 2.4365 8 6 1.7587 -4.1704 2.6097 9 8 1.2083 -4.8008 1.7319 10 6 2.1534 -4.8535 3.8937 11 1 1.6441 -4.3790 4.7326 12 6 3.6679 -4.7509 4.0865 13 6 4.1077 -5.6439 5.2096 14 6 3.3924 -6.6091 5.6913 15 6 2.0188 -6.9634 5.2012 16 6 1.7724 -6.3379 3.8264 17 7 1.4559 -0.1036 2.4423 18 6 2.0442 1.0003 2.9997 19 1 2.9386 1.4158 2.5594 20 6 1.4905 1.5858 4.1299 21 7 0.4002 1.0797 4.6661 22 14 2.2926 3.0920 4.8897 23 1 2.3222 4.1927 3.8933 24 1 1.5134 3.5209 6.0788 25 1 3.6801 2.7594 5.3012 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6768 1.9563 0.8899 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 2.1408 -2.6766 0.3506 34 1 0.5563 -2.2706 1.0527 35 1 2.4583 -2.3551 3.1386 36 1 4.1704 -5.0520 3.1674 37 1 3.9331 -3.7201 4.3222 38 1 5.0819 -5.4707 5.6425 39 1 3.8097 -7.1959 6.4962 40 1 1.9305 -8.0472 5.1259 41 1 1.2763 -6.5904 5.9065 42 1 0.7189 -6.4342 3.5636 43 1 2.3869 -6.8403 3.0793 44 1 0.6524 -0.4766 2.8376 45 1 0.0134 1.4887 5.4561 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715516898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:54 Heat of formation + Delta-G solvation = -53.941464 kcal Electronic energy + Delta-G solvation = -22743.402339 eV Core-core repulsion = 19566.540625 eV Total energy + Delta-G solvation = -3176.861714 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.17819 -39.15074 -38.29106 -35.28213 -34.71774 -32.45316 -31.87626 -31.60127 -29.34695 -27.79371 -25.78153 -24.82351 -23.97045 -22.96727 -21.23772 -20.18510 -19.20965 -18.84246 -18.17795 -17.13713 -16.80659 -16.36554 -16.15280 -15.78460 -15.24571 -15.11180 -14.75369 -14.69432 -14.54206 -14.16697 -14.00949 -13.72572 -13.47849 -13.14849 -13.08281 -12.86285 -12.76189 -12.67767 -12.43792 -12.15750 -11.96970 -11.94874 -11.88595 -11.70017 -11.38962 -11.27746 -11.16884 -10.86269 -10.61568 -9.95103 -9.85696 -8.91528 -7.84158 -5.09991 1.43734 1.52019 1.53038 1.58084 1.68000 2.33307 2.62425 3.49341 3.62893 3.74545 3.88605 3.92691 3.96903 4.24868 4.29566 4.31105 4.36790 4.42828 4.46591 4.48280 4.64238 4.69658 4.75547 4.78003 4.91717 4.95678 4.99612 5.04683 5.07483 5.13571 5.23112 5.26681 5.32321 5.34449 5.35195 5.58181 5.60367 5.66180 5.78892 5.81916 6.07576 6.35926 6.64148 7.29002 7.44471 8.16587 8.41965 9.38562 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.004977 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.345778 B = 5624.392069 C = 6875.804966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.170 3.830 5 H 0.057 0.943 6 C 0.119 3.881 7 N -0.710 5.710 8 C 0.513 3.487 9 O -0.587 6.587 10 C -0.104 4.104 11 H 0.099 0.901 12 C -0.078 4.078 13 C -0.163 4.163 14 C -0.157 4.157 15 C -0.091 4.091 16 C -0.095 4.095 17 N -0.720 5.720 18 C -0.212 4.212 19 H 0.079 0.921 20 C -0.070 4.070 21 N -0.967 5.967 22 Si 0.956 3.044 23 H -0.284 1.284 24 H -0.305 1.305 25 H -0.280 1.280 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.410 0.590 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.373 0.627 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.758 -12.161 -2.294 14.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 C -0.195 4.195 4 C 0.061 3.939 5 H 0.075 0.925 6 C -0.006 4.006 7 N -0.360 5.360 8 C 0.300 3.700 9 O -0.469 6.469 10 C -0.125 4.125 11 H 0.117 0.883 12 C -0.115 4.115 13 C -0.181 4.181 14 C -0.175 4.175 15 C -0.127 4.127 16 C -0.133 4.133 17 N -0.360 5.360 18 C -0.344 4.344 19 H 0.096 0.904 20 C -0.262 4.262 21 N -0.619 5.619 22 Si 0.787 3.213 23 H -0.211 1.211 24 H -0.232 1.232 25 H -0.206 1.206 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.246 0.754 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.205 0.795 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.516 -12.440 -2.887 14.337 hybrid contribution -0.085 1.327 1.017 1.674 sum 6.431 -11.113 -1.871 12.975 Atomic orbital electron populations 1.21680 0.95970 1.00658 1.00758 1.21584 0.95873 0.96955 0.98216 1.21762 1.00044 0.96414 1.01257 1.20679 0.96706 0.89013 0.87512 0.92498 1.21614 0.99796 0.92725 0.86425 1.46033 1.60579 1.09579 1.19805 1.21068 0.77672 0.81910 0.89319 1.90625 1.44746 1.65785 1.45701 1.21401 0.98818 0.97644 0.94673 0.88280 1.20381 0.92094 1.00540 0.98517 1.22083 1.00864 0.96983 0.98134 1.22268 0.96362 0.98267 1.00634 1.20522 0.95326 1.01587 0.95307 1.21369 1.01533 0.92398 0.97978 1.42479 1.31345 1.32628 1.29542 1.19433 1.06199 1.03421 1.05390 0.90362 1.25295 0.98772 1.02152 1.00012 1.69794 1.23764 1.43856 1.24457 0.85474 0.77638 0.80801 0.77405 1.21107 1.23233 1.20584 0.94537 0.92642 0.93328 0.90403 0.93148 0.93263 0.93012 0.90744 0.92893 0.75374 0.90667 0.90121 0.86214 0.86038 0.89183 0.90301 0.92067 0.91950 0.79505 0.94545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 8.74 71.98 0.63 -3.82 16 2 C -0.10 -3.34 2.74 -10.79 -0.03 -3.37 16 3 C -0.14 -4.56 8.46 71.98 0.61 -3.95 16 4 C 0.17 5.92 2.29 44.99 0.10 6.03 16 5 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 6 C 0.12 3.92 5.10 86.38 0.44 4.36 16 7 N -0.71 -23.08 5.29 -463.06 -2.45 -25.54 16 8 C 0.51 16.80 7.14 87.66 0.63 17.42 16 9 O -0.59 -22.84 15.90 -3.03 -0.05 -22.89 16 10 C -0.10 -2.73 2.58 -11.40 -0.03 -2.76 16 11 H 0.10 2.63 8.13 -2.38 -0.02 2.61 16 12 C -0.08 -1.75 5.27 29.66 0.16 -1.59 16 13 C -0.16 -3.15 9.80 27.04 0.27 -2.89 16 14 C -0.16 -2.83 9.80 27.04 0.27 -2.57 16 15 C -0.09 -1.68 6.12 29.67 0.18 -1.49 16 16 C -0.09 -2.28 4.70 30.74 0.14 -2.14 16 17 N -0.72 -31.54 3.53 -322.94 -1.14 -32.68 16 18 C -0.21 -10.41 7.75 84.03 0.65 -9.76 16 19 H 0.08 3.70 7.32 -2.91 -0.02 3.67 16 20 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 21 N -0.97 -55.87 13.06 21.65 0.28 -55.58 16 22 Si 0.96 43.91 29.55 68.60 2.03 45.93 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.31 -14.58 7.11 99.48 0.71 -13.88 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 26 H 0.04 1.47 7.47 -2.39 -0.02 1.45 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.55 6.46 -2.39 -0.02 1.54 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.05 2.04 5.99 -2.39 -0.01 2.02 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 1.91 6.34 -2.39 -0.02 1.89 16 35 H 0.41 13.46 7.81 -92.71 -0.72 12.73 16 36 H 0.07 1.69 8.10 -2.39 -0.02 1.68 16 37 H 0.08 1.79 7.90 -2.38 -0.02 1.77 16 38 H 0.12 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.12 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.62 7.90 -2.39 -0.02 1.60 16 43 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 44 H 0.37 18.39 7.80 -92.70 -0.72 17.67 16 45 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -60.00 353.48 2.67 -57.33 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -0.48 Total: 43.21 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.48 Total: -9.78 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -3.31 Total: -113.80 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -60.00 2.67 -57.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715516898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.391 kcal (2) G-P(sol) polarization free energy of solvation -60.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds