Wall clock time and date at job start Tue Mar 31 2020 01:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.47166 * 2 1 4 4 C 1.53001 * 109.47401 * 119.99869 * 2 1 3 5 5 H 1.09002 * 109.46728 * 300.00119 * 4 2 1 6 6 C 1.52998 * 109.47111 * 60.00068 * 4 2 1 7 7 N 1.46497 * 109.47174 * 175.00316 * 6 4 2 8 8 C 1.34783 * 119.99701 * 179.97438 * 7 6 4 9 9 O 1.21280 * 120.00121 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.99713 * 179.97438 * 8 7 6 11 11 H 1.09000 * 109.64124 * 299.58188 * 10 8 7 12 12 C 1.53024 * 109.64158 * 60.00191 * 10 8 7 13 13 C 1.50067 * 110.14715 * 169.11930 * 12 10 8 14 14 C 1.29436 * 124.07606 * 342.86935 * 13 12 10 15 15 C 1.50070 * 124.07632 * 0.49196 * 14 13 12 16 16 C 1.53030 * 110.13826 * 342.83002 * 15 14 13 17 17 N 1.46496 * 109.47588 * 180.02562 * 4 2 1 18 18 C 1.36934 * 120.00548 * 84.99655 * 17 4 2 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 4 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 4 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 H 1.08994 * 109.47414 * 300.00032 * 1 2 3 27 27 H 1.09007 * 109.47089 * 60.00197 * 1 2 3 28 28 H 1.09001 * 109.46909 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47414 * 239.99968 * 2 1 3 30 30 H 1.08992 * 109.47213 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46905 * 300.00064 * 3 2 1 32 32 H 1.09000 * 109.46656 * 60.00026 * 3 2 1 33 33 H 1.09006 * 109.46999 * 295.00336 * 6 4 2 34 34 H 1.08999 * 109.47387 * 54.99960 * 6 4 2 35 35 H 0.96998 * 120.00251 * 359.97438 * 7 6 4 36 36 H 1.08997 * 109.36021 * 289.32602 * 12 10 8 37 37 H 1.09001 * 109.36061 * 48.91306 * 12 10 8 38 38 H 1.08007 * 117.96182 * 162.89446 * 13 12 10 39 39 H 1.08008 * 117.96468 * 180.47164 * 14 13 12 40 40 H 1.08993 * 109.35811 * 103.05441 * 15 14 13 41 41 H 1.09001 * 109.35947 * 222.63701 * 15 14 13 42 42 H 1.08999 * 109.66384 * 289.77949 * 16 15 14 43 43 H 1.09005 * 109.63769 * 169.14119 * 16 15 14 44 44 H 0.96999 * 119.99694 * 265.00179 * 17 4 2 45 45 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2073 2.1392 6 6 1.5301 -2.1637 1.2493 7 7 2.1142 -2.8881 2.3807 8 6 1.8053 -4.1844 2.5827 9 8 1.0434 -4.7510 1.8281 10 6 2.4066 -4.9298 3.7463 11 1 3.4928 -4.9370 3.6549 12 6 2.0052 -4.2485 5.0564 13 6 2.3687 -5.1184 6.2239 14 6 2.6382 -6.3810 6.1314 15 6 2.6352 -7.1492 4.8421 16 6 1.8769 -6.3692 3.7659 17 7 3.5050 -0.7207 1.2496 18 6 4.1893 0.3542 1.7510 19 1 3.6488 1.2015 2.1466 20 6 5.5773 0.3549 1.7508 21 7 6.2351 1.3879 2.2332 22 14 6.5120 -1.1110 1.0672 23 1 6.7600 -2.0909 2.1550 24 1 5.7096 -1.7536 -0.0044 25 1 7.8092 -0.6536 0.5077 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.4437 -2.1650 1.3388 34 1 1.8184 -2.6511 0.3179 35 1 2.7233 -2.4349 2.9845 36 1 2.5248 -3.2941 5.1413 37 1 0.9294 -4.0731 5.0576 38 1 2.4074 -4.6627 7.2023 39 1 2.8807 -6.9150 7.0384 40 1 3.6624 -7.3107 4.5155 41 1 2.1518 -8.1137 4.9973 42 1 0.8119 -6.3645 3.9982 43 1 2.0408 -6.8332 2.7932 44 1 3.9903 -1.4818 0.8946 45 1 7.2051 1.3882 2.2334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715516899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:59 Heat of formation + Delta-G solvation = -35.882376 kcal Electronic energy + Delta-G solvation = -22740.695134 eV Core-core repulsion = 19564.616521 eV Total energy + Delta-G solvation = -3176.078613 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.05894 -37.98361 -37.09882 -33.96940 -33.15906 -31.49795 -30.94103 -30.68550 -28.12351 -26.26831 -24.32872 -23.44136 -22.62278 -21.52299 -20.12908 -19.41321 -18.02188 -17.78963 -16.93793 -15.97726 -15.54624 -15.31068 -14.68538 -14.25743 -14.08032 -13.85154 -13.55785 -13.45125 -13.25429 -12.99298 -12.80499 -12.55734 -12.33638 -12.24862 -12.08640 -11.66120 -11.23220 -11.12099 -11.05366 -10.91742 -10.84894 -10.67361 -10.43384 -10.25363 -10.17692 -10.01766 -9.53212 -9.47758 -9.11697 -8.96433 -8.72029 -7.36378 -5.84506 -3.20532 2.17179 2.85521 3.30649 3.35768 3.40506 3.47988 4.51813 4.54844 4.59344 4.81092 5.11194 5.12633 5.16411 5.20974 5.27031 5.35892 5.41453 5.43990 5.57161 5.60356 5.66769 5.74816 5.77275 5.80524 5.87370 5.91336 6.08044 6.11455 6.17042 6.22035 6.28904 6.37631 6.49122 6.52276 6.56503 6.62821 6.81881 6.84338 6.99345 7.31746 7.83502 7.91561 8.33762 8.48104 9.11796 9.84168 10.03599 11.33059 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014142 B = 0.005412 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.455928 B = 5172.054191 C = 6402.321720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.175 3.825 5 H 0.062 0.938 6 C 0.110 3.890 7 N -0.716 5.716 8 C 0.514 3.486 9 O -0.552 6.552 10 C -0.109 4.109 11 H 0.099 0.901 12 C -0.083 4.083 13 C -0.150 4.150 14 C -0.159 4.159 15 C -0.092 4.092 16 C -0.097 4.097 17 N -0.746 5.746 18 C -0.241 4.241 19 H 0.095 0.905 20 C 0.008 3.992 21 N -0.930 5.930 22 Si 0.878 3.122 23 H -0.285 1.285 24 H -0.278 1.278 25 H -0.292 1.292 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.409 0.591 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 -11.866 4.306 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.065 3.935 5 H 0.080 0.920 6 C -0.015 4.015 7 N -0.368 5.368 8 C 0.300 3.700 9 O -0.431 6.431 10 C -0.131 4.131 11 H 0.117 0.883 12 C -0.121 4.121 13 C -0.168 4.168 14 C -0.177 4.177 15 C -0.129 4.129 16 C -0.135 4.135 17 N -0.389 5.389 18 C -0.371 4.371 19 H 0.112 0.888 20 C -0.188 4.188 21 N -0.578 5.578 22 Si 0.708 3.292 23 H -0.211 1.211 24 H -0.204 1.204 25 H -0.218 1.218 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.246 0.754 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.749 -12.019 3.885 15.956 hybrid contribution 1.209 -0.644 -0.205 1.386 sum -8.540 -12.663 3.680 15.711 Atomic orbital electron populations 1.21935 0.96637 1.00948 1.01156 1.21698 0.93783 0.98031 0.99527 1.21825 1.04392 0.94238 0.99214 1.20528 0.85012 0.91306 0.96653 0.91973 1.21782 0.97738 0.93081 0.88880 1.46078 1.48702 1.11103 1.30900 1.20564 0.81331 0.82051 0.86040 1.90655 1.36600 1.67991 1.47836 1.21407 1.02004 0.96306 0.93353 0.88320 1.20431 1.01980 0.98468 0.91175 1.22005 1.00716 0.95237 0.98822 1.22063 1.01522 0.95730 0.98428 1.20498 1.00907 0.98437 0.93103 1.21397 1.00093 0.92890 0.99119 1.42844 1.00382 1.20795 1.74907 1.19043 0.89261 0.96338 1.32422 0.88760 1.24646 0.96200 0.97051 1.00905 1.69690 1.07084 1.29736 1.51241 0.86660 0.79993 0.83411 0.79094 1.21127 1.20384 1.21837 0.93006 0.93434 0.93091 0.92062 0.89313 0.94979 0.93775 0.91237 0.92047 0.75426 0.89984 0.90351 0.87594 0.88002 0.90822 0.90886 0.91235 0.90769 0.80546 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.84 37.16 0.33 -1.69 16 2 C -0.11 -1.78 2.69 -90.62 -0.24 -2.02 16 3 C -0.14 -2.50 8.26 37.16 0.31 -2.19 16 4 C 0.17 3.04 2.18 -67.93 -0.15 2.89 16 5 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 6 C 0.11 1.74 4.73 -4.04 -0.02 1.72 16 7 N -0.72 -11.03 5.30 -60.29 -0.32 -11.35 16 8 C 0.51 7.94 7.14 -10.98 -0.08 7.86 16 9 O -0.55 -10.15 15.90 5.56 0.09 -10.06 16 10 C -0.11 -1.37 2.58 -91.56 -0.24 -1.60 16 11 H 0.10 1.21 8.13 -51.93 -0.42 0.79 16 12 C -0.08 -0.93 5.27 -28.18 -0.15 -1.07 16 13 C -0.15 -1.53 9.80 -35.90 -0.35 -1.88 16 14 C -0.16 -1.54 9.80 -35.90 -0.35 -1.90 16 15 C -0.09 -0.88 6.12 -28.17 -0.17 -1.06 16 16 C -0.10 -1.13 4.70 -26.51 -0.12 -1.25 16 17 N -0.75 -15.73 4.24 -53.43 -0.23 -15.95 16 18 C -0.24 -6.08 8.05 -15.06 -0.12 -6.20 16 19 H 0.09 2.57 7.63 -52.48 -0.40 2.17 16 20 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 21 N -0.93 -27.61 13.97 55.49 0.78 -26.84 16 22 Si 0.88 21.07 27.74 -169.99 -4.71 16.36 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.41 6.52 56.52 0.37 -6.05 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.65 6.55 -51.93 -0.34 0.31 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 1.91 6.01 -51.93 -0.31 1.60 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.05 6.71 -51.93 -0.35 0.70 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.41 6.28 7.81 -40.82 -0.32 5.96 16 36 H 0.08 0.90 7.89 -51.93 -0.41 0.49 16 37 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 38 H 0.11 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.10 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 43 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16 44 H 0.36 7.81 5.66 -40.82 -0.23 7.58 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 351.66 15.07 5.30 5.30 Total: -1.00 -29.41 351.66 -8.40 -37.81 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -7.85 Total: 13.00 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.46 Total: -8.27 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.23 Total: -54.14 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.71 Total: 16.36 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.41 -8.40 -37.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715516899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.933 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds