Wall clock time and date at job start Tue Mar 31 2020 01:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.47166 * 2 1 4 4 C 1.53001 * 109.47401 * 119.99869 * 2 1 3 5 5 H 1.09002 * 109.46728 * 300.00119 * 4 2 1 6 6 C 1.52998 * 109.47111 * 60.00068 * 4 2 1 7 7 N 1.46497 * 109.47174 * 175.00316 * 6 4 2 8 8 C 1.34783 * 119.99701 * 179.97438 * 7 6 4 9 9 O 1.21280 * 120.00121 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.99713 * 179.97438 * 8 7 6 11 11 H 1.09000 * 109.64124 * 299.58188 * 10 8 7 12 12 C 1.53024 * 109.64158 * 60.00191 * 10 8 7 13 13 C 1.50067 * 110.14715 * 169.11930 * 12 10 8 14 14 C 1.29436 * 124.07606 * 342.86935 * 13 12 10 15 15 C 1.50070 * 124.07632 * 0.49196 * 14 13 12 16 16 C 1.53030 * 110.13826 * 342.83002 * 15 14 13 17 17 N 1.46496 * 109.47588 * 180.02562 * 4 2 1 18 18 C 1.36934 * 120.00548 * 84.99655 * 17 4 2 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 4 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 4 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 H 1.08994 * 109.47414 * 300.00032 * 1 2 3 27 27 H 1.09007 * 109.47089 * 60.00197 * 1 2 3 28 28 H 1.09001 * 109.46909 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47414 * 239.99968 * 2 1 3 30 30 H 1.08992 * 109.47213 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46905 * 300.00064 * 3 2 1 32 32 H 1.09000 * 109.46656 * 60.00026 * 3 2 1 33 33 H 1.09006 * 109.46999 * 295.00336 * 6 4 2 34 34 H 1.08999 * 109.47387 * 54.99960 * 6 4 2 35 35 H 0.96998 * 120.00251 * 359.97438 * 7 6 4 36 36 H 1.08997 * 109.36021 * 289.32602 * 12 10 8 37 37 H 1.09001 * 109.36061 * 48.91306 * 12 10 8 38 38 H 1.08007 * 117.96182 * 162.89446 * 13 12 10 39 39 H 1.08008 * 117.96468 * 180.47164 * 14 13 12 40 40 H 1.08993 * 109.35811 * 103.05441 * 15 14 13 41 41 H 1.09001 * 109.35947 * 222.63701 * 15 14 13 42 42 H 1.08999 * 109.66384 * 289.77949 * 16 15 14 43 43 H 1.09005 * 109.63769 * 169.14119 * 16 15 14 44 44 H 0.96999 * 119.99694 * 265.00179 * 17 4 2 45 45 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2073 2.1392 6 6 1.5301 -2.1637 1.2493 7 7 2.1142 -2.8881 2.3807 8 6 1.8053 -4.1844 2.5827 9 8 1.0434 -4.7510 1.8281 10 6 2.4066 -4.9298 3.7463 11 1 3.4928 -4.9370 3.6549 12 6 2.0052 -4.2485 5.0564 13 6 2.3687 -5.1184 6.2239 14 6 2.6382 -6.3810 6.1314 15 6 2.6352 -7.1492 4.8421 16 6 1.8769 -6.3692 3.7659 17 7 3.5050 -0.7207 1.2496 18 6 4.1893 0.3542 1.7510 19 1 3.6488 1.2015 2.1466 20 6 5.5773 0.3549 1.7508 21 7 6.2351 1.3879 2.2332 22 14 6.5120 -1.1110 1.0672 23 1 6.7600 -2.0909 2.1550 24 1 5.7096 -1.7536 -0.0044 25 1 7.8092 -0.6536 0.5077 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.4437 -2.1650 1.3388 34 1 1.8184 -2.6511 0.3179 35 1 2.7233 -2.4349 2.9845 36 1 2.5248 -3.2941 5.1413 37 1 0.9294 -4.0731 5.0576 38 1 2.4074 -4.6627 7.2023 39 1 2.8807 -6.9150 7.0384 40 1 3.6624 -7.3107 4.5155 41 1 2.1518 -8.1137 4.9973 42 1 0.8119 -6.3645 3.9982 43 1 2.0408 -6.8332 2.7932 44 1 3.9903 -1.4818 0.8946 45 1 7.2051 1.3882 2.2334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715516899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:58 Heat of formation + Delta-G solvation = -53.584208 kcal Electronic energy + Delta-G solvation = -22741.462743 eV Core-core repulsion = 19564.616521 eV Total energy + Delta-G solvation = -3176.846222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22703 -39.21074 -38.32564 -35.32484 -34.94231 -32.78884 -32.28742 -31.68323 -29.56011 -27.59284 -25.71388 -24.63691 -23.82223 -22.88999 -21.40559 -20.84166 -19.54088 -18.86552 -18.16556 -17.20721 -17.00090 -16.50453 -15.99740 -15.87156 -15.30008 -15.04171 -14.79706 -14.60885 -14.57412 -14.33085 -14.13866 -13.90986 -13.52005 -13.24086 -13.12484 -12.95685 -12.90822 -12.81659 -12.47992 -12.32353 -11.99385 -11.93641 -11.77487 -11.71243 -11.51357 -11.33783 -11.30221 -10.91004 -10.66415 -10.02588 -9.87290 -9.27188 -7.95072 -5.27142 1.39296 1.41381 1.42149 1.47538 1.63351 2.26697 2.51665 3.35300 3.55214 3.61183 3.73197 3.85153 3.87887 4.20131 4.27097 4.27756 4.28771 4.41370 4.43043 4.46681 4.61202 4.62923 4.72523 4.74160 4.90268 4.90607 4.94833 5.02385 5.05328 5.06913 5.16007 5.23665 5.25786 5.31521 5.33710 5.52317 5.61696 5.75778 5.77341 5.87509 6.06252 6.27368 6.57835 7.13112 7.23689 7.87665 8.06463 9.25887 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014142 B = 0.005412 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.455928 B = 5172.054191 C = 6402.321720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.176 3.824 5 H 0.059 0.941 6 C 0.118 3.882 7 N -0.716 5.716 8 C 0.514 3.486 9 O -0.582 6.582 10 C -0.106 4.106 11 H 0.103 0.897 12 C -0.080 4.080 13 C -0.163 4.163 14 C -0.158 4.158 15 C -0.091 4.091 16 C -0.095 4.095 17 N -0.746 5.746 18 C -0.203 4.203 19 H 0.069 0.931 20 C -0.058 4.058 21 N -0.981 5.981 22 Si 0.938 3.062 23 H -0.277 1.277 24 H -0.263 1.263 25 H -0.306 1.306 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.410 0.590 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.362 0.638 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.474 -13.721 4.423 17.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.191 4.191 4 C 0.068 3.932 5 H 0.077 0.923 6 C -0.006 4.006 7 N -0.367 5.367 8 C 0.302 3.698 9 O -0.463 6.463 10 C -0.127 4.127 11 H 0.121 0.879 12 C -0.117 4.117 13 C -0.181 4.181 14 C -0.176 4.176 15 C -0.127 4.127 16 C -0.133 4.133 17 N -0.388 5.388 18 C -0.334 4.334 19 H 0.087 0.913 20 C -0.249 4.249 21 N -0.633 5.633 22 Si 0.767 3.233 23 H -0.204 1.204 24 H -0.188 1.188 25 H -0.234 1.234 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.247 0.753 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.195 0.805 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.985 -13.904 3.994 18.164 hybrid contribution 1.448 -0.027 -0.260 1.472 sum -9.536 -13.931 3.734 17.290 Atomic orbital electron populations 1.21849 0.93808 1.02044 1.02165 1.21609 0.96100 0.96479 0.98486 1.21722 1.01591 0.95786 1.00037 1.20664 0.82713 0.92717 0.97141 0.92311 1.21662 0.98436 0.91605 0.88905 1.46101 1.48616 1.11298 1.30688 1.21057 0.80697 0.81792 0.86290 1.90639 1.38044 1.68523 1.49086 1.21437 1.01961 0.96603 0.92747 0.87892 1.20395 1.01809 0.98630 0.90896 1.22074 1.01658 0.95497 0.98870 1.22268 1.00571 0.95632 0.99086 1.20520 1.01089 0.98802 0.92332 1.21370 0.99951 0.92515 0.99438 1.42820 1.01991 1.19525 1.74511 1.18930 0.89013 0.95992 1.29434 0.91349 1.25256 0.97340 0.99558 1.02741 1.69850 1.06866 1.32216 1.54353 0.85671 0.78123 0.80587 0.78882 1.20351 1.18781 1.23359 0.92477 0.92031 0.91947 0.92290 0.93385 0.92990 0.94169 0.89827 0.92619 0.75325 0.90041 0.90657 0.86393 0.86178 0.90179 0.89254 0.91995 0.91821 0.80490 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.84 71.98 0.64 -2.77 16 2 C -0.11 -3.27 2.69 -10.79 -0.03 -3.29 16 3 C -0.13 -4.71 8.26 71.99 0.59 -4.11 16 4 C 0.18 5.89 2.18 44.99 0.10 5.98 16 5 H 0.06 2.04 8.08 -2.39 -0.02 2.03 16 6 C 0.12 3.55 4.73 86.38 0.41 3.95 16 7 N -0.72 -21.05 5.30 -463.06 -2.45 -23.50 16 8 C 0.51 15.24 7.14 87.66 0.63 15.86 16 9 O -0.58 -20.78 15.90 -3.03 -0.05 -20.83 16 10 C -0.11 -2.51 2.58 -11.40 -0.03 -2.54 16 11 H 0.10 2.36 8.13 -2.39 -0.02 2.34 16 12 C -0.08 -1.66 5.27 29.66 0.16 -1.51 16 13 C -0.16 -2.98 9.80 27.04 0.27 -2.71 16 14 C -0.16 -2.64 9.80 27.04 0.27 -2.37 16 15 C -0.09 -1.51 6.12 29.66 0.18 -1.33 16 16 C -0.09 -2.07 4.70 30.74 0.14 -1.92 16 17 N -0.75 -30.83 4.24 -322.95 -1.37 -32.20 16 18 C -0.20 -10.32 8.05 84.03 0.68 -9.64 16 19 H 0.07 3.82 7.63 -2.91 -0.02 3.80 16 20 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 21 N -0.98 -59.95 13.97 21.65 0.30 -59.65 16 22 Si 0.94 43.76 27.74 68.60 1.90 45.66 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.26 -11.41 6.52 99.48 0.65 -10.76 16 25 H -0.31 -14.94 7.11 99.48 0.71 -14.24 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.34 8.14 -2.38 -0.02 1.33 16 28 H 0.06 1.39 6.55 -2.39 -0.02 1.37 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 2.08 6.01 -2.39 -0.01 2.06 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 2.32 6.71 -2.38 -0.02 2.30 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.41 12.06 7.81 -92.71 -0.72 11.34 16 36 H 0.08 1.68 7.89 -2.39 -0.02 1.66 16 37 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 38 H 0.12 1.86 8.06 -2.91 -0.02 1.83 16 39 H 0.12 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.06 1.43 8.12 -2.39 -0.02 1.41 16 43 H 0.06 1.51 7.89 -2.38 -0.02 1.49 16 44 H 0.36 15.09 5.66 -92.71 -0.52 14.57 16 45 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -63.61 351.66 2.45 -61.16 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: -0.34 Total: 38.47 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 4.46 Total: -9.11 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -3.52 Total: -115.35 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.05 Total: -20.83 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.90 Total: 45.66 kcal Total: -63.61 2.45 -61.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715516899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.577 kcal (2) G-P(sol) polarization free energy of solvation -63.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds