Wall clock time and date at job start Tue Mar 31 2020 01:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.09008 * 109.47230 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34769 * 119.99943 * 180.02562 * 7 6 4 9 9 O 1.21280 * 120.00484 * 0.02562 * 8 7 6 10 10 C 1.50709 * 120.00063 * 179.97438 * 8 7 6 11 11 C 1.53894 * 113.58589 * 279.21528 * 10 8 7 12 12 C 1.53423 * 86.82357 * 220.45409 * 11 10 8 13 13 C 1.52462 * 128.60590 * 165.09675 * 12 11 10 14 14 C 1.52456 * 128.52230 * 245.01690 * 12 11 10 15 15 C 1.53259 * 87.72074 * 25.02056 * 12 11 10 16 16 N 1.46493 * 109.47225 * 180.02562 * 4 2 1 17 17 C 1.36936 * 120.00314 * 84.99627 * 16 4 2 18 18 H 1.08001 * 120.00159 * 0.02562 * 17 16 4 19 19 C 1.38811 * 119.99842 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 179.72505 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.09008 * 109.46965 * 299.99907 * 1 2 3 26 26 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 27 27 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 29 29 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 31 31 H 1.09008 * 109.47122 * 60.00190 * 3 2 1 32 32 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 33 33 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 34 34 H 0.97003 * 120.00245 * 0.02562 * 7 6 4 35 35 H 1.08993 * 112.83112 * 50.33422 * 10 8 7 36 36 H 1.08999 * 113.64606 * 334.93001 * 11 10 8 37 37 H 1.08993 * 113.64428 * 105.92944 * 11 10 8 38 38 H 1.09003 * 117.51182 * 224.96219 * 13 12 11 39 39 H 1.09000 * 117.51313 * 10.06870 * 13 12 11 40 40 H 1.09002 * 117.51174 * 349.80460 * 14 12 11 41 41 H 1.08997 * 117.51622 * 134.86429 * 14 12 11 42 42 H 1.09007 * 113.64552 * 220.48767 * 15 12 11 43 43 H 1.09001 * 113.72945 * 89.48971 * 15 12 11 44 44 H 0.97000 * 120.00040 * 264.99759 * 16 4 2 45 45 H 0.96999 * 119.99889 * 180.27497 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1847 2.5821 9 8 1.0454 -4.7518 1.8265 10 6 2.4072 -4.9302 3.7457 11 6 3.8397 -5.4280 3.4840 12 6 3.4322 -6.7181 4.2077 13 6 4.1453 -8.0656 4.2239 14 6 3.9623 -7.2767 5.5234 15 6 1.9835 -6.4080 3.8155 16 7 3.5049 -0.7208 1.2496 17 6 4.1892 0.3542 1.7510 18 1 3.6489 1.2015 2.1467 19 6 5.5773 0.3548 1.7508 20 7 6.2349 1.3904 2.2279 21 14 6.5120 -1.1104 1.0659 22 1 6.7659 -2.0882 2.1543 23 1 5.7067 -1.7561 -0.0017 24 1 7.8062 -0.6517 0.5007 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 0.4436 -2.1650 1.3388 33 1 1.8183 -2.6511 0.3179 34 1 2.7226 -2.4349 2.9849 35 1 2.2958 -4.3994 4.6911 36 1 4.0663 -5.5722 2.4276 37 1 4.6043 -4.8547 4.0080 38 1 3.5362 -8.9592 4.0873 39 1 5.1479 -8.1099 3.7986 40 1 4.8447 -6.8021 5.9529 41 1 3.2330 -7.6508 6.2419 42 1 1.2621 -6.6190 4.6050 43 1 1.6911 -6.8249 2.8518 44 1 3.9903 -1.4819 0.8946 45 1 7.2049 1.3925 2.2241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715644649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:40 Heat of formation + Delta-G solvation = 8.755769 kcal Electronic energy + Delta-G solvation = -22567.971536 eV Core-core repulsion = 19393.828578 eV Total energy + Delta-G solvation = -3174.142958 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.36020 -38.53343 -37.24977 -33.90657 -33.64609 -33.15584 -30.84965 -28.43762 -26.29653 -25.82607 -24.87976 -23.08331 -22.59566 -21.55602 -20.10662 -19.38021 -18.45299 -17.73030 -16.81325 -15.88489 -15.64203 -15.27827 -15.19509 -14.51597 -14.23814 -14.07367 -13.58620 -13.22258 -12.95383 -12.60898 -12.52506 -12.35538 -12.20799 -12.05529 -11.65916 -11.65263 -11.58615 -11.21136 -11.11163 -10.90116 -10.67247 -10.46899 -10.38486 -10.25201 -10.17563 -10.01612 -9.82244 -9.52466 -9.42658 -8.96243 -8.71313 -7.36108 -5.84367 -3.20299 2.84023 3.30285 3.35527 3.39673 3.42510 3.68678 4.21800 4.45245 4.51836 4.61794 4.70664 4.77706 5.12951 5.19061 5.26951 5.31070 5.41961 5.46415 5.54943 5.57609 5.66191 5.67077 5.68545 5.74638 5.78172 5.89785 5.90596 5.96811 6.07765 6.13340 6.17490 6.24941 6.29407 6.37953 6.49516 6.56842 6.63411 6.85191 6.99670 7.31969 7.85537 7.91855 8.33935 8.49688 9.12036 9.84366 10.03888 11.33255 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.005369 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.241722 B = 5213.500948 C = 6790.297210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.140 4.140 4 C 0.175 3.825 5 H 0.062 0.938 6 C 0.109 3.891 7 N -0.715 5.715 8 C 0.519 3.481 9 O -0.553 6.553 10 C -0.132 4.132 11 C -0.084 4.084 12 C -0.162 4.162 13 C -0.167 4.167 14 C -0.151 4.151 15 C -0.073 4.073 16 N -0.746 5.746 17 C -0.241 4.241 18 H 0.095 0.905 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.878 3.122 22 H -0.284 1.284 23 H -0.278 1.278 24 H -0.292 1.292 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.410 0.590 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.362 0.638 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.769 -13.038 3.338 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.065 3.935 5 H 0.080 0.920 6 C -0.015 4.015 7 N -0.366 5.366 8 C 0.305 3.695 9 O -0.432 6.432 10 C -0.153 4.153 11 C -0.121 4.121 12 C -0.163 4.163 13 C -0.204 4.204 14 C -0.188 4.188 15 C -0.111 4.111 16 N -0.389 5.389 17 C -0.370 4.370 18 H 0.112 0.888 19 C -0.188 4.188 20 N -0.578 5.578 21 Si 0.709 3.291 22 H -0.211 1.211 23 H -0.204 1.204 24 H -0.219 1.219 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.231 -13.183 2.910 15.812 hybrid contribution 1.162 -0.629 -0.278 1.351 sum -7.068 -13.812 2.632 15.738 Atomic orbital electron populations 1.21937 0.96639 1.00954 1.01159 1.21696 0.93784 0.98030 0.99523 1.21826 1.04396 0.94241 0.99216 1.20528 0.85015 0.91311 0.96646 0.91980 1.21784 0.97733 0.93086 0.88901 1.46065 1.48615 1.11031 1.30910 1.20428 0.81038 0.81909 0.86137 1.90647 1.36740 1.68014 1.47812 1.22601 0.97994 0.96545 0.98134 1.22443 0.94874 0.93903 1.00910 1.22203 0.97250 0.95174 1.01628 1.22793 1.01661 0.94625 1.01283 1.22785 1.02722 1.03016 0.90301 1.22350 0.93413 0.92855 1.02432 1.42842 1.00382 1.20806 1.74891 1.19049 0.89269 0.96311 1.32416 0.88765 1.24647 0.96193 0.97055 1.00916 1.69691 1.07080 1.29581 1.51430 0.86656 0.79970 0.83417 0.79099 1.21088 1.20392 1.21869 0.93008 0.93424 0.93087 0.92067 0.89308 0.94975 0.93772 0.91242 0.92074 0.75397 0.86853 0.89298 0.90305 0.88742 0.88729 0.88533 0.88634 0.91143 0.88393 0.80534 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.84 37.16 0.33 -1.70 16 2 C -0.11 -1.79 2.69 -90.62 -0.24 -2.03 16 3 C -0.14 -2.51 8.26 37.16 0.31 -2.21 16 4 C 0.17 3.06 2.18 -67.93 -0.15 2.91 16 5 H 0.06 1.13 8.08 -51.92 -0.42 0.71 16 6 C 0.11 1.75 4.73 -4.04 -0.02 1.73 16 7 N -0.72 -11.12 5.39 -60.29 -0.32 -11.44 16 8 C 0.52 8.06 7.35 -10.98 -0.08 7.98 16 9 O -0.55 -10.24 15.90 5.56 0.09 -10.15 16 10 C -0.13 -1.64 4.14 -90.84 -0.38 -2.01 16 11 C -0.08 -1.02 7.66 -26.05 -0.20 -1.22 16 12 C -0.16 -1.75 3.09 -154.71 -0.48 -2.23 16 13 C -0.17 -1.58 10.53 -26.94 -0.28 -1.86 16 14 C -0.15 -1.38 10.53 -26.94 -0.28 -1.67 16 15 C -0.07 -0.85 7.42 -26.13 -0.19 -1.04 16 16 N -0.75 -15.77 4.24 -53.43 -0.23 -16.00 16 17 C -0.24 -6.09 8.05 -15.06 -0.12 -6.21 16 18 H 0.09 2.58 7.63 -52.49 -0.40 2.18 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -27.65 13.97 55.49 0.78 -26.87 16 21 Si 0.88 21.04 27.74 -169.99 -4.72 16.32 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.41 6.51 56.52 0.37 -6.04 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.09 1.92 6.01 -51.93 -0.31 1.61 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.79 8.14 -51.92 -0.42 0.36 16 32 H 0.07 1.06 6.71 -51.93 -0.35 0.71 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.41 6.35 8.14 -40.82 -0.33 6.02 16 35 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 1.28 7.44 -51.93 -0.39 0.89 16 44 H 0.36 7.82 5.66 -40.82 -0.23 7.58 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -29.43 357.39 -8.76 -38.19 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -7.85 Total: 14.01 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -1.89 Total: -9.44 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.22 Total: -54.31 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.72 Total: 16.32 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.43 -8.76 -38.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715644649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.941 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds