Wall clock time and date at job start Tue Mar 31 2020 01:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.09008 * 109.47230 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34769 * 119.99943 * 180.02562 * 7 6 4 9 9 O 1.21280 * 120.00484 * 0.02562 * 8 7 6 10 10 C 1.50709 * 120.00063 * 179.97438 * 8 7 6 11 11 C 1.53894 * 113.58589 * 279.21528 * 10 8 7 12 12 C 1.53423 * 86.82357 * 220.45409 * 11 10 8 13 13 C 1.52462 * 128.60590 * 165.09675 * 12 11 10 14 14 C 1.52456 * 128.52230 * 245.01690 * 12 11 10 15 15 C 1.53259 * 87.72074 * 25.02056 * 12 11 10 16 16 N 1.46493 * 109.47225 * 180.02562 * 4 2 1 17 17 C 1.36936 * 120.00314 * 84.99627 * 16 4 2 18 18 H 1.08001 * 120.00159 * 0.02562 * 17 16 4 19 19 C 1.38811 * 119.99842 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 179.72505 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.09008 * 109.46965 * 299.99907 * 1 2 3 26 26 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 27 27 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 29 29 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 31 31 H 1.09008 * 109.47122 * 60.00190 * 3 2 1 32 32 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 33 33 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 34 34 H 0.97003 * 120.00245 * 0.02562 * 7 6 4 35 35 H 1.08993 * 112.83112 * 50.33422 * 10 8 7 36 36 H 1.08999 * 113.64606 * 334.93001 * 11 10 8 37 37 H 1.08993 * 113.64428 * 105.92944 * 11 10 8 38 38 H 1.09003 * 117.51182 * 224.96219 * 13 12 11 39 39 H 1.09000 * 117.51313 * 10.06870 * 13 12 11 40 40 H 1.09002 * 117.51174 * 349.80460 * 14 12 11 41 41 H 1.08997 * 117.51622 * 134.86429 * 14 12 11 42 42 H 1.09007 * 113.64552 * 220.48767 * 15 12 11 43 43 H 1.09001 * 113.72945 * 89.48971 * 15 12 11 44 44 H 0.97000 * 120.00040 * 264.99759 * 16 4 2 45 45 H 0.96999 * 119.99889 * 180.27497 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1847 2.5821 9 8 1.0454 -4.7518 1.8265 10 6 2.4072 -4.9302 3.7457 11 6 3.8397 -5.4280 3.4840 12 6 3.4322 -6.7181 4.2077 13 6 4.1453 -8.0656 4.2239 14 6 3.9623 -7.2767 5.5234 15 6 1.9835 -6.4080 3.8155 16 7 3.5049 -0.7208 1.2496 17 6 4.1892 0.3542 1.7510 18 1 3.6489 1.2015 2.1467 19 6 5.5773 0.3548 1.7508 20 7 6.2349 1.3904 2.2279 21 14 6.5120 -1.1104 1.0659 22 1 6.7659 -2.0882 2.1543 23 1 5.7067 -1.7561 -0.0017 24 1 7.8062 -0.6517 0.5007 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 0.4436 -2.1650 1.3388 33 1 1.8183 -2.6511 0.3179 34 1 2.7226 -2.4349 2.9849 35 1 2.2958 -4.3994 4.6911 36 1 4.0663 -5.5722 2.4276 37 1 4.6043 -4.8547 4.0080 38 1 3.5362 -8.9592 4.0873 39 1 5.1479 -8.1099 3.7986 40 1 4.8447 -6.8021 5.9529 41 1 3.2330 -7.6508 6.2419 42 1 1.2621 -6.6190 4.6050 43 1 1.6911 -6.8249 2.8518 44 1 3.9903 -1.4819 0.8946 45 1 7.2049 1.3925 2.2241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715644649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:39 Heat of formation + Delta-G solvation = -8.786841 kcal Electronic energy + Delta-G solvation = -22568.732241 eV Core-core repulsion = 19393.828578 eV Total energy + Delta-G solvation = -3174.903663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43668 -39.68530 -38.64980 -35.27690 -34.94482 -34.51059 -32.69916 -29.90672 -27.61651 -26.75755 -26.21624 -24.66737 -23.33632 -23.00306 -21.40147 -20.80875 -19.51687 -19.31277 -18.06370 -17.17060 -17.00576 -16.50763 -16.03985 -15.95881 -15.58562 -15.53809 -14.98964 -14.69224 -14.51329 -14.25724 -13.65053 -13.49582 -13.36541 -13.04556 -12.95644 -12.92093 -12.84869 -12.54119 -12.42608 -12.32965 -12.31535 -11.94378 -11.76143 -11.51377 -11.34470 -11.32698 -11.26830 -10.90945 -10.72003 -10.49897 -10.02236 -9.27358 -7.95315 -5.27358 1.38984 1.41206 1.47219 1.62162 2.26548 2.51473 2.85092 3.34973 3.38277 3.53550 3.58036 3.67530 3.85268 3.87791 3.93675 4.18075 4.27256 4.27900 4.38325 4.43784 4.61089 4.72666 4.73529 4.76913 4.79421 4.81882 4.90481 4.94647 4.98758 5.03440 5.04979 5.15694 5.23504 5.24834 5.28676 5.30163 5.34172 5.53026 5.61494 5.75509 5.87239 6.27151 6.59768 7.12888 7.25232 7.87453 8.06328 9.25704 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.005369 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.241722 B = 5213.500948 C = 6790.297210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.176 3.824 5 H 0.059 0.941 6 C 0.118 3.882 7 N -0.715 5.715 8 C 0.518 3.482 9 O -0.584 6.584 10 C -0.129 4.129 11 C -0.087 4.087 12 C -0.172 4.172 13 C -0.167 4.167 14 C -0.139 4.139 15 C -0.070 4.070 16 N -0.746 5.746 17 C -0.203 4.203 18 H 0.068 0.932 19 C -0.057 4.057 20 N -0.982 5.982 21 Si 0.938 3.062 22 H -0.275 1.275 23 H -0.264 1.264 24 H -0.306 1.306 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.411 0.589 35 H 0.133 0.867 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.362 0.638 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.026 -14.885 3.638 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.191 4.191 4 C 0.068 3.932 5 H 0.077 0.923 6 C -0.006 4.006 7 N -0.366 5.366 8 C 0.306 3.694 9 O -0.465 6.465 10 C -0.150 4.150 11 C -0.125 4.125 12 C -0.172 4.172 13 C -0.203 4.203 14 C -0.176 4.176 15 C -0.108 4.108 16 N -0.388 5.388 17 C -0.334 4.334 18 H 0.086 0.914 19 C -0.249 4.249 20 N -0.633 5.633 21 Si 0.767 3.233 22 H -0.201 1.201 23 H -0.189 1.189 24 H -0.234 1.234 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.247 0.753 35 H 0.151 0.849 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.128 0.872 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.195 0.805 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.538 -15.062 3.201 18.113 hybrid contribution 1.440 -0.010 -0.388 1.491 sum -8.098 -15.072 2.813 17.339 Atomic orbital electron populations 1.21852 0.93796 1.02048 1.02180 1.21607 0.96114 0.96485 0.98473 1.21723 1.01593 0.95780 1.00051 1.20663 0.82726 0.92710 0.97129 0.92328 1.21660 0.98429 0.91615 0.88924 1.46097 1.48544 1.11253 1.30696 1.20954 0.80368 0.81615 0.86479 1.90631 1.38221 1.68533 1.49136 1.22697 0.97967 0.96799 0.97500 1.22417 0.94667 0.95084 1.00337 1.22127 0.96417 0.95352 1.03351 1.22898 1.01677 0.94229 1.01544 1.22899 1.02915 1.01843 0.89916 1.22272 0.94448 0.92031 1.02013 1.42819 1.01986 1.19542 1.74498 1.18935 0.89034 0.95973 1.29478 0.91366 1.25255 0.97320 0.99556 1.02723 1.69851 1.06874 1.32061 1.54519 0.85671 0.78074 0.80616 0.78909 1.20147 1.18884 1.23406 0.92467 0.92006 0.91952 0.92323 0.93387 0.92971 0.94156 0.89827 0.92734 0.75292 0.84927 0.90797 0.90086 0.87831 0.88582 0.88019 0.87188 0.89696 0.90250 0.80481 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.84 71.98 0.64 -2.80 16 2 C -0.11 -3.29 2.69 -10.79 -0.03 -3.32 16 3 C -0.13 -4.74 8.26 71.98 0.59 -4.14 16 4 C 0.18 5.93 2.18 44.99 0.10 6.03 16 5 H 0.06 2.06 8.08 -2.38 -0.02 2.04 16 6 C 0.12 3.58 4.73 86.38 0.41 3.98 16 7 N -0.72 -21.20 5.39 -463.05 -2.49 -23.69 16 8 C 0.52 15.43 7.35 87.66 0.64 16.07 16 9 O -0.58 -21.03 15.90 -3.03 -0.05 -21.08 16 10 C -0.13 -2.98 4.14 -10.94 -0.05 -3.03 16 11 C -0.09 -2.01 7.66 31.04 0.24 -1.77 16 12 C -0.17 -3.37 3.09 -52.31 -0.16 -3.53 16 13 C -0.17 -2.78 10.53 30.46 0.32 -2.46 16 14 C -0.14 -2.14 10.53 30.46 0.32 -1.82 16 15 C -0.07 -1.51 7.42 30.98 0.23 -1.28 16 16 N -0.75 -30.99 4.24 -322.94 -1.37 -32.36 16 17 C -0.20 -10.38 8.05 84.03 0.68 -9.71 16 18 H 0.07 3.83 7.63 -2.91 -0.02 3.80 16 19 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 20 N -0.98 -60.03 13.97 21.65 0.30 -59.73 16 21 Si 0.94 43.78 27.74 68.60 1.90 45.68 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.26 -11.49 6.51 99.48 0.65 -10.84 16 24 H -0.31 -14.98 7.11 99.48 0.71 -14.28 16 25 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.40 6.54 -2.39 -0.02 1.38 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 29 H 0.05 2.08 6.01 -2.39 -0.01 2.07 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.08 2.34 6.71 -2.39 -0.02 2.32 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.41 12.15 8.14 -92.71 -0.75 11.39 16 35 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.08 2.01 7.44 -2.39 -0.02 2.00 16 44 H 0.36 15.17 5.66 -92.71 -0.52 14.65 16 45 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -63.92 357.39 2.33 -61.60 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: -0.37 Total: 40.04 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 4.40 Total: -10.46 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -3.56 Total: -115.78 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.05 Total: -21.08 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.90 Total: 45.68 kcal Total: -63.92 2.33 -61.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715644649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.811 kcal (2) G-P(sol) polarization free energy of solvation -63.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds