Wall clock time and date at job start Tue Mar 31 2020 01:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.51577 * 135.78242 * 2 1 4 4 C 1.53841 * 86.75901 * 154.84142 * 3 2 1 5 5 C 1.52997 * 113.65982 * 270.22175 * 4 3 2 6 6 C 1.50699 * 113.65988 * 139.26636 * 4 3 2 7 7 O 1.21286 * 119.99903 * 0.02562 * 6 4 3 8 8 N 1.34776 * 120.00049 * 179.97438 * 6 4 3 9 9 C 1.46507 * 120.00141 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.47145 * 180.02562 * 9 8 6 11 11 H 1.08994 * 109.47407 * 64.99715 * 10 9 8 12 12 N 1.46505 * 109.46889 * 304.99940 * 10 9 8 13 13 C 1.36933 * 119.99856 * 155.00270 * 12 10 9 14 14 H 1.08008 * 120.00167 * 359.97438 * 13 12 10 15 15 C 1.38817 * 120.00111 * 179.97438 * 13 12 10 16 16 N 1.31616 * 119.99603 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00167 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46896 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47201 * 120.00030 * 17 15 13 20 20 H 1.48495 * 109.47082 * 239.99989 * 17 15 13 21 21 C 1.52997 * 109.46894 * 185.00225 * 10 9 8 22 22 C 1.53006 * 109.47164 * 184.99623 * 21 10 9 23 23 C 1.52999 * 109.47269 * 65.00119 * 21 10 9 24 24 C 1.51584 * 135.78046 * 179.97438 * 2 1 3 25 25 H 1.07998 * 119.99916 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99869 * 179.97438 * 1 2 3 27 27 H 1.09006 * 113.66882 * 40.37640 * 3 2 1 28 28 H 1.08995 * 113.75115 * 269.31675 * 3 2 1 29 29 H 1.09005 * 109.46836 * 298.32977 * 5 4 3 30 30 H 1.08998 * 109.47117 * 58.33036 * 5 4 3 31 31 H 1.09001 * 109.47177 * 178.33488 * 5 4 3 32 32 H 0.97000 * 120.00148 * 0.02562 * 8 6 4 33 33 H 1.09000 * 109.46932 * 60.00309 * 9 8 6 34 34 H 1.08998 * 109.46791 * 300.00460 * 9 8 6 35 35 H 0.97001 * 120.00036 * 335.00580 * 12 10 9 36 36 H 0.97005 * 119.99522 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.47140 * 304.99571 * 21 10 9 38 38 H 1.09001 * 109.47002 * 59.99738 * 22 21 10 39 39 H 1.08993 * 109.46955 * 180.02562 * 22 21 10 40 40 H 1.09000 * 109.47050 * 300.00004 * 22 21 10 41 41 H 1.09001 * 109.47362 * 180.02562 * 23 21 10 42 42 H 1.09002 * 109.46716 * 299.99747 * 23 21 10 43 43 H 1.09000 * 109.47486 * 59.99665 * 23 21 10 44 44 H 1.09007 * 113.66175 * 90.69653 * 24 2 1 45 45 H 1.08995 * 113.66718 * 319.62736 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3036 0.0000 0.6530 5 6 3.2461 0.0016 2.1819 6 6 4.7130 0.0000 0.1195 7 8 5.0344 0.7882 -0.7444 8 7 5.6166 -0.8753 0.6032 9 6 6.9869 -0.8750 0.0850 10 6 7.8014 -1.9571 0.7966 11 1 7.3987 -2.9385 0.5463 12 7 7.7247 -1.7527 2.2453 13 6 7.9094 -2.8093 3.0965 14 1 8.1112 -3.7934 2.6999 15 6 7.8371 -2.6156 4.4692 16 7 7.5906 -1.4164 4.9524 17 14 8.0884 -4.0571 5.6304 18 1 8.3484 -5.2884 4.8419 19 1 9.2484 -3.7829 6.5161 20 1 6.8688 -4.2459 6.4562 21 6 9.2614 -1.8750 0.3466 22 6 10.0504 -3.0330 0.9612 23 6 9.8634 -0.5462 0.8081 24 6 2.3964 -1.0572 0.0005 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 2.1796 1.9073 0.6467 28 1 2.7193 1.3547 -0.9976 29 1 3.5890 0.9657 2.5573 30 1 2.2202 -0.1710 2.5071 31 1 3.8883 -0.7888 2.5704 32 1 5.3596 -1.5054 1.2945 33 1 7.4424 0.0991 0.2631 34 1 6.9704 -1.0781 -0.9857 35 1 7.5429 -0.8690 2.6014 36 1 7.5405 -1.2810 5.9117 37 1 9.3107 -1.9382 -0.7404 38 1 9.6216 -3.9796 0.6325 39 1 11.0906 -2.9742 0.6410 40 1 10.0012 -2.9697 2.0482 41 1 10.9034 -0.4875 0.4872 42 1 9.3013 0.2787 0.3703 43 1 9.8141 -0.4830 1.8952 44 1 2.7184 -1.3540 -0.9978 45 1 2.1795 -1.9071 0.6475 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715646530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:40 Heat of formation + Delta-G solvation = 0.206529 kcal Electronic energy + Delta-G solvation = -22879.339172 eV Core-core repulsion = 19704.825492 eV Total energy + Delta-G solvation = -3174.513681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44211 -38.10464 -36.98334 -33.86679 -32.92216 -31.54266 -30.14749 -28.10602 -27.47896 -26.36627 -25.92139 -24.10505 -23.01832 -21.54753 -19.55374 -18.58888 -17.76745 -17.31124 -16.60305 -15.78953 -15.31591 -14.94356 -14.58736 -14.34735 -14.18591 -14.08761 -13.45218 -13.28722 -13.16881 -12.98625 -12.33919 -12.24966 -12.10140 -11.93333 -11.72747 -11.33029 -11.31813 -11.00289 -10.97594 -10.88482 -10.80027 -10.53511 -10.29301 -10.22998 -10.11990 -9.90276 -9.49834 -9.38639 -9.12716 -8.94228 -8.56422 -7.03732 -5.83709 -3.12217 2.14727 2.94084 3.37266 3.44265 3.46116 3.65142 4.31740 4.47802 4.52458 4.54697 4.98876 5.18855 5.35384 5.40038 5.42965 5.52916 5.61721 5.68884 5.73362 5.75832 5.83721 5.85980 5.91121 5.94172 5.98998 6.11760 6.18007 6.23748 6.33523 6.33750 6.35061 6.43523 6.55366 6.64987 6.71377 6.82478 6.85495 6.97626 7.07451 7.29084 7.65498 7.99179 8.33674 8.61716 9.46102 10.01081 10.37511 11.38080 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.005084 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.103189 B = 5506.234133 C = 6722.958973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.141 4.141 3 C -0.082 4.082 4 C -0.102 4.102 5 C -0.128 4.128 6 C 0.526 3.474 7 O -0.556 6.556 8 N -0.708 5.708 9 C 0.111 3.889 10 C 0.168 3.832 11 H 0.053 0.947 12 N -0.717 5.717 13 C -0.235 4.235 14 H 0.073 0.927 15 C -0.010 4.010 16 N -0.928 5.928 17 Si 0.900 3.100 18 H -0.281 1.281 19 H -0.293 1.293 20 H -0.293 1.293 21 C -0.107 4.107 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.089 4.089 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.410 0.590 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.385 0.615 36 H 0.254 0.746 37 H 0.048 0.952 38 H 0.039 0.961 39 H 0.032 0.968 40 H 0.085 0.915 41 H 0.036 0.964 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.371 1.055 -9.005 12.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.141 4.141 3 C -0.120 4.120 4 C -0.105 4.105 5 C -0.185 4.185 6 C 0.312 3.688 7 O -0.435 6.435 8 N -0.359 5.359 9 C -0.013 4.013 10 C 0.057 3.943 11 H 0.070 0.930 12 N -0.359 5.359 13 C -0.366 4.366 14 H 0.091 0.909 15 C -0.206 4.206 16 N -0.577 5.577 17 Si 0.732 3.268 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.220 1.220 21 C -0.129 4.129 22 C -0.199 4.199 23 C -0.198 4.198 24 C -0.127 4.127 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.247 0.753 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.220 0.780 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.104 0.896 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.112 0.888 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.086 1.428 -9.514 12.567 hybrid contribution 0.135 -0.800 1.221 1.466 sum -7.950 0.628 -8.293 11.505 Atomic orbital electron populations 1.22816 0.93365 1.01975 1.03407 1.22832 0.93803 0.98290 0.99199 1.22247 0.92082 0.95577 1.02061 1.21932 0.91537 0.99547 0.97521 1.21589 1.02709 1.03540 0.90658 1.20203 0.86484 0.80293 0.81835 1.90639 1.80400 1.39914 1.32505 1.45999 1.10805 1.37335 1.41717 1.21736 0.81471 1.00786 0.97341 1.20544 0.92071 0.95536 0.86129 0.92953 1.42425 1.85232 1.09797 0.98455 1.19245 1.40598 0.89474 0.87321 0.90920 1.24698 1.02792 0.96330 0.96794 1.69667 1.55838 1.20096 1.12056 0.86226 0.77317 0.81903 0.81385 1.20607 1.21999 1.21994 1.21611 0.97723 0.95816 0.97727 1.21841 0.97264 0.96637 1.04149 1.21768 0.98503 0.96304 1.03179 1.22290 0.93109 0.96005 1.01259 0.87746 0.87780 0.90499 0.87747 0.91590 0.91683 0.90805 0.75304 0.91498 0.92142 0.78024 0.93582 0.93311 0.94178 0.94868 0.89583 0.94446 0.93817 0.90977 0.88763 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 14.71 29.01 0.43 -1.30 16 2 C -0.14 -1.60 6.60 -100.29 -0.66 -2.26 16 3 C -0.08 -1.04 6.98 -27.01 -0.19 -1.23 16 4 C -0.10 -1.39 1.27 -154.88 -0.20 -1.59 16 5 C -0.13 -1.70 8.98 37.16 0.33 -1.37 16 6 C 0.53 8.75 6.93 -10.99 -0.08 8.67 16 7 O -0.56 -10.84 15.90 5.55 0.09 -10.75 16 8 N -0.71 -11.71 5.27 -60.29 -0.32 -12.02 16 9 C 0.11 1.88 5.10 -4.04 -0.02 1.86 16 10 C 0.17 3.02 2.29 -67.93 -0.16 2.87 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 12 N -0.72 -15.63 3.53 -53.43 -0.19 -15.82 16 13 C -0.24 -5.76 7.75 -15.06 -0.12 -5.88 16 14 H 0.07 1.76 7.33 -52.48 -0.38 1.38 16 15 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 16 N -0.93 -25.97 13.06 55.49 0.72 -25.24 16 17 Si 0.90 21.10 29.55 -169.99 -5.02 16.07 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 C -0.11 -1.81 2.74 -90.62 -0.25 -2.06 16 22 C -0.14 -2.48 8.46 37.16 0.31 -2.17 16 23 C -0.14 -2.41 8.74 37.16 0.32 -2.08 16 24 C -0.09 -1.05 7.18 -27.02 -0.19 -1.25 16 25 H 0.10 0.89 8.06 -52.49 -0.42 0.46 16 26 H 0.10 0.88 8.06 -52.49 -0.42 0.45 16 27 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 28 H 0.10 1.43 7.42 -51.93 -0.39 1.04 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.77 7.70 -51.93 -0.40 0.37 16 31 H 0.07 1.07 7.04 -51.93 -0.37 0.71 16 32 H 0.41 6.86 7.04 -40.82 -0.29 6.57 16 33 H 0.07 1.22 6.34 -51.93 -0.33 0.89 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.39 9.27 7.80 -40.82 -0.32 8.95 16 36 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.77 5.99 -51.93 -0.31 1.46 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.04 0.72 6.46 -51.93 -0.34 0.38 16 43 H 0.07 1.45 7.47 -51.93 -0.39 1.06 16 44 H 0.09 1.11 8.09 -51.92 -0.42 0.69 16 45 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -27.69 358.10 -7.58 -35.27 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -7.70 Total: 15.23 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -0.55 Total: -8.14 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.22 Total: -53.08 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.69 -7.58 -35.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715646530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.474 kcal (2) G-P(sol) polarization free energy of solvation -27.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds