Wall clock time and date at job start Tue Mar 31 2020 01:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.51577 * 135.78242 * 2 1 4 4 C 1.53841 * 86.75901 * 154.84142 * 3 2 1 5 5 C 1.52997 * 113.65982 * 270.22175 * 4 3 2 6 6 C 1.50699 * 113.65988 * 139.26636 * 4 3 2 7 7 O 1.21286 * 119.99903 * 0.02562 * 6 4 3 8 8 N 1.34776 * 120.00049 * 179.97438 * 6 4 3 9 9 C 1.46507 * 120.00141 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.47145 * 180.02562 * 9 8 6 11 11 H 1.08994 * 109.47407 * 64.99715 * 10 9 8 12 12 N 1.46505 * 109.46889 * 304.99940 * 10 9 8 13 13 C 1.36933 * 119.99856 * 155.00270 * 12 10 9 14 14 H 1.08008 * 120.00167 * 359.97438 * 13 12 10 15 15 C 1.38817 * 120.00111 * 179.97438 * 13 12 10 16 16 N 1.31616 * 119.99603 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00167 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46896 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47201 * 120.00030 * 17 15 13 20 20 H 1.48495 * 109.47082 * 239.99989 * 17 15 13 21 21 C 1.52997 * 109.46894 * 185.00225 * 10 9 8 22 22 C 1.53006 * 109.47164 * 184.99623 * 21 10 9 23 23 C 1.52999 * 109.47269 * 65.00119 * 21 10 9 24 24 C 1.51584 * 135.78046 * 179.97438 * 2 1 3 25 25 H 1.07998 * 119.99916 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99869 * 179.97438 * 1 2 3 27 27 H 1.09006 * 113.66882 * 40.37640 * 3 2 1 28 28 H 1.08995 * 113.75115 * 269.31675 * 3 2 1 29 29 H 1.09005 * 109.46836 * 298.32977 * 5 4 3 30 30 H 1.08998 * 109.47117 * 58.33036 * 5 4 3 31 31 H 1.09001 * 109.47177 * 178.33488 * 5 4 3 32 32 H 0.97000 * 120.00148 * 0.02562 * 8 6 4 33 33 H 1.09000 * 109.46932 * 60.00309 * 9 8 6 34 34 H 1.08998 * 109.46791 * 300.00460 * 9 8 6 35 35 H 0.97001 * 120.00036 * 335.00580 * 12 10 9 36 36 H 0.97005 * 119.99522 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.47140 * 304.99571 * 21 10 9 38 38 H 1.09001 * 109.47002 * 59.99738 * 22 21 10 39 39 H 1.08993 * 109.46955 * 180.02562 * 22 21 10 40 40 H 1.09000 * 109.47050 * 300.00004 * 22 21 10 41 41 H 1.09001 * 109.47362 * 180.02562 * 23 21 10 42 42 H 1.09002 * 109.46716 * 299.99747 * 23 21 10 43 43 H 1.09000 * 109.47486 * 59.99665 * 23 21 10 44 44 H 1.09007 * 113.66175 * 90.69653 * 24 2 1 45 45 H 1.08995 * 113.66718 * 319.62736 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3036 0.0000 0.6530 5 6 3.2461 0.0016 2.1819 6 6 4.7130 0.0000 0.1195 7 8 5.0344 0.7882 -0.7444 8 7 5.6166 -0.8753 0.6032 9 6 6.9869 -0.8750 0.0850 10 6 7.8014 -1.9571 0.7966 11 1 7.3987 -2.9385 0.5463 12 7 7.7247 -1.7527 2.2453 13 6 7.9094 -2.8093 3.0965 14 1 8.1112 -3.7934 2.6999 15 6 7.8371 -2.6156 4.4692 16 7 7.5906 -1.4164 4.9524 17 14 8.0884 -4.0571 5.6304 18 1 8.3484 -5.2884 4.8419 19 1 9.2484 -3.7829 6.5161 20 1 6.8688 -4.2459 6.4562 21 6 9.2614 -1.8750 0.3466 22 6 10.0504 -3.0330 0.9612 23 6 9.8634 -0.5462 0.8081 24 6 2.3964 -1.0572 0.0005 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 2.1796 1.9073 0.6467 28 1 2.7193 1.3547 -0.9976 29 1 3.5890 0.9657 2.5573 30 1 2.2202 -0.1710 2.5071 31 1 3.8883 -0.7888 2.5704 32 1 5.3596 -1.5054 1.2945 33 1 7.4424 0.0991 0.2631 34 1 6.9704 -1.0781 -0.9857 35 1 7.5429 -0.8690 2.6014 36 1 7.5405 -1.2810 5.9117 37 1 9.3107 -1.9382 -0.7404 38 1 9.6216 -3.9796 0.6325 39 1 11.0906 -2.9742 0.6410 40 1 10.0012 -2.9697 2.0482 41 1 10.9034 -0.4875 0.4872 42 1 9.3013 0.2787 0.3703 43 1 9.8141 -0.4830 1.8952 44 1 2.7184 -1.3540 -0.9978 45 1 2.1795 -1.9071 0.6475 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715646530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:40 Heat of formation + Delta-G solvation = -15.369134 kcal Electronic energy + Delta-G solvation = -22880.014584 eV Core-core repulsion = 19704.825492 eV Total energy + Delta-G solvation = -3175.189092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.61222 -39.41402 -38.38730 -35.30217 -34.72037 -32.55151 -31.84512 -29.53679 -28.54930 -27.79614 -26.88756 -25.77560 -24.52184 -22.90294 -20.88492 -20.00190 -19.16055 -18.66927 -17.83910 -17.15886 -16.78953 -16.28019 -15.95031 -15.61212 -15.49016 -15.29274 -15.00209 -14.71527 -14.51048 -14.34191 -13.81338 -13.45329 -13.35920 -13.12449 -12.90282 -12.83255 -12.80435 -12.69427 -12.42582 -12.33652 -12.13899 -11.92945 -11.90600 -11.80185 -11.37175 -11.17305 -11.14327 -10.88561 -10.63271 -10.00375 -9.94693 -8.91292 -7.84059 -5.09764 1.33144 1.49851 1.53214 1.59828 1.63051 2.35931 2.62225 3.36951 3.48469 3.51086 3.58966 3.89730 3.93708 3.96646 4.03903 4.28581 4.36313 4.43484 4.48041 4.66020 4.69014 4.75543 4.78336 4.79780 4.88216 4.95345 4.95952 4.99845 5.01747 5.13002 5.21227 5.23031 5.27425 5.32072 5.34246 5.56859 5.58421 5.60557 5.66441 5.81862 6.01815 6.36140 6.63276 7.27128 7.44830 8.16427 8.42120 9.38900 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.005084 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.103189 B = 5506.234133 C = 6722.958973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.158 4.158 3 C -0.083 4.083 4 C -0.105 4.105 5 C -0.120 4.120 6 C 0.523 3.477 7 O -0.587 6.587 8 N -0.707 5.707 9 C 0.118 3.882 10 C 0.170 3.830 11 H 0.057 0.943 12 N -0.720 5.720 13 C -0.211 4.211 14 H 0.079 0.921 15 C -0.068 4.068 16 N -0.965 5.965 17 Si 0.953 3.047 18 H -0.268 1.268 19 H -0.305 1.305 20 H -0.300 1.300 21 C -0.105 4.105 22 C -0.137 4.137 23 C -0.133 4.133 24 C -0.082 4.082 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.410 0.590 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.373 0.627 36 H 0.245 0.755 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.036 0.964 44 H 0.091 0.909 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.362 -0.050 -10.385 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C -0.120 4.120 4 C -0.108 4.108 5 C -0.178 4.178 6 C 0.311 3.689 7 O -0.469 6.469 8 N -0.357 5.357 9 C -0.006 4.006 10 C 0.061 3.939 11 H 0.075 0.925 12 N -0.360 5.360 13 C -0.343 4.343 14 H 0.096 0.904 15 C -0.261 4.261 16 N -0.617 5.617 17 Si 0.785 3.215 18 H -0.192 1.192 19 H -0.233 1.233 20 H -0.227 1.227 21 C -0.126 4.126 22 C -0.195 4.195 23 C -0.191 4.191 24 C -0.119 4.119 25 H 0.136 0.864 26 H 0.139 0.861 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.247 0.753 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.205 0.795 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.109 0.891 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.070 0.284 -10.936 14.211 hybrid contribution 0.437 -0.442 1.529 1.651 sum -8.634 -0.158 -9.407 12.770 Atomic orbital electron populations 1.23135 0.92699 1.03468 1.00076 1.22673 0.94108 0.96884 1.02137 1.22178 0.92640 0.95972 1.01202 1.21982 0.89773 1.01450 0.97606 1.21516 1.03447 1.02391 0.90417 1.20770 0.87561 0.79401 0.81205 1.90616 1.81183 1.41046 1.34018 1.46018 1.10736 1.37352 1.41573 1.21634 0.81504 0.99591 0.97905 1.20674 0.93256 0.96011 0.83950 0.92542 1.42486 1.84967 1.08555 0.99970 1.19502 1.37200 0.90094 0.87483 0.90355 1.25266 1.04537 0.97957 0.98309 1.69803 1.58648 1.21789 1.11460 0.85356 0.76221 0.80268 0.79636 1.19208 1.23287 1.22729 1.21582 0.96259 0.95416 0.99349 1.21763 0.98737 0.97231 1.01747 1.21681 0.99860 0.96767 1.00764 1.22233 0.92628 0.96036 1.01038 0.86375 0.86072 0.90067 0.89221 0.92563 0.89772 0.92332 0.75348 0.92853 0.90731 0.79468 0.94557 0.90424 0.93311 0.92976 0.93078 0.92627 0.93371 0.94490 0.89070 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 14.71 67.78 1.00 -1.54 16 2 C -0.16 -3.25 6.60 -15.98 -0.11 -3.36 16 3 C -0.08 -2.03 6.98 30.41 0.21 -1.82 16 4 C -0.11 -2.80 1.27 -52.42 -0.07 -2.87 16 5 C -0.12 -3.16 8.98 71.98 0.65 -2.51 16 6 C 0.52 17.41 6.93 87.66 0.61 18.02 16 7 O -0.59 -23.08 15.90 -3.05 -0.05 -23.13 16 8 N -0.71 -23.27 5.27 -463.05 -2.44 -25.71 16 9 C 0.12 3.92 5.10 86.38 0.44 4.36 16 10 C 0.17 5.94 2.29 44.99 0.10 6.04 16 11 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 12 N -0.72 -31.44 3.53 -322.94 -1.14 -32.58 16 13 C -0.21 -10.29 7.75 84.04 0.65 -9.63 16 14 H 0.08 3.71 7.33 -2.91 -0.02 3.68 16 15 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 16 N -0.97 -55.38 13.06 21.65 0.28 -55.10 16 17 Si 0.95 43.80 29.55 68.60 2.03 45.83 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 19 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 20 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 21 C -0.10 -3.33 2.74 -10.79 -0.03 -3.36 16 22 C -0.14 -4.54 8.46 71.98 0.61 -3.93 16 23 C -0.13 -4.44 8.74 71.98 0.63 -3.82 16 24 C -0.08 -1.82 7.18 30.41 0.22 -1.60 16 25 H 0.12 1.60 8.06 -2.91 -0.02 1.57 16 26 H 0.12 1.57 8.06 -2.91 -0.02 1.55 16 27 H 0.08 1.87 8.10 -2.38 -0.02 1.85 16 28 H 0.09 2.46 7.42 -2.39 -0.02 2.44 16 29 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.08 1.87 7.70 -2.39 -0.02 1.85 16 31 H 0.06 1.71 7.04 -2.39 -0.02 1.69 16 32 H 0.41 13.68 7.04 -92.71 -0.65 13.03 16 33 H 0.05 1.93 6.34 -2.39 -0.02 1.92 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 35 H 0.37 18.34 7.80 -92.71 -0.72 17.62 16 36 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.05 2.05 5.99 -2.39 -0.01 2.04 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.05 1.54 6.46 -2.39 -0.02 1.52 16 43 H 0.04 1.48 7.47 -2.39 -0.02 1.47 16 44 H 0.09 2.05 8.09 -2.38 -0.02 2.03 16 45 H 0.09 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -59.69 358.10 3.66 -56.03 By element: Atomic # 1 Polarization: 44.24 SS G_CDS: -0.40 Total: 43.83 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 5.38 Total: -9.18 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -3.30 Total: -113.39 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -59.69 3.66 -56.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715646530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.661 kcal (2) G-P(sol) polarization free energy of solvation -59.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds