Wall clock time and date at job start Tue Mar 31 2020 01:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46880 * 2 1 4 4 C 1.52994 * 109.47062 * 120.00029 * 2 1 3 5 5 H 1.09000 * 109.47321 * 300.00047 * 4 2 1 6 6 C 1.52998 * 109.47095 * 180.02562 * 4 2 1 7 7 N 1.46506 * 109.47237 * 184.99775 * 6 4 2 8 8 C 1.34773 * 119.99969 * 179.72043 * 7 6 4 9 9 O 1.21281 * 120.00220 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.00080 * 180.02562 * 8 7 6 11 11 C 1.53006 * 110.34323 * 302.29198 * 10 8 7 12 12 C 1.51104 * 110.38508 * 64.69917 * 10 8 7 13 13 C 1.30519 * 111.10253 * 135.24899 * 12 10 8 14 14 C 1.51103 * 111.10608 * 0.02562 * 13 12 10 15 15 C 1.54628 * 104.72369 * 343.56176 * 14 13 12 16 16 N 1.46496 * 109.47150 * 60.00448 * 4 2 1 17 17 C 1.36939 * 119.99812 * 274.99441 * 16 4 2 18 18 H 1.07998 * 120.00031 * 0.02562 * 17 16 4 19 19 C 1.38818 * 120.00155 * 179.97438 * 17 16 4 20 20 N 1.31620 * 119.99687 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99946 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.46574 * 90.00678 * 21 19 17 23 23 H 1.48498 * 109.46954 * 209.99820 * 21 19 17 24 24 H 1.48496 * 109.47655 * 330.00561 * 21 19 17 25 25 H 1.09002 * 109.47763 * 300.00103 * 1 2 3 26 26 H 1.09001 * 109.47186 * 60.00310 * 1 2 3 27 27 H 1.08999 * 109.46837 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47091 * 240.00217 * 2 1 3 29 29 H 1.08995 * 109.46913 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46958 * 299.99830 * 3 2 1 31 31 H 1.09005 * 109.46729 * 59.99883 * 3 2 1 32 32 H 1.09001 * 109.47671 * 65.00115 * 6 4 2 33 33 H 1.08998 * 109.47454 * 305.00112 * 6 4 2 34 34 H 0.97005 * 119.99811 * 0.02562 * 7 6 4 35 35 H 1.08998 * 109.47166 * 59.29518 * 11 10 8 36 36 H 1.08998 * 109.46893 * 179.29477 * 11 10 8 37 37 H 1.08996 * 109.46906 * 299.29584 * 11 10 8 38 38 H 1.08001 * 124.44474 * 315.23007 * 12 10 8 39 39 H 1.08002 * 124.44614 * 180.02562 * 13 12 10 40 40 H 1.08997 * 110.38268 * 224.75024 * 14 13 12 41 41 H 1.08999 * 110.38463 * 102.37201 * 14 13 12 42 42 H 1.08993 * 111.03850 * 266.60089 * 15 14 13 43 43 H 1.09000 * 111.03964 * 142.66595 * 15 14 13 44 44 H 0.96996 * 120.00496 * 95.00000 * 16 4 2 45 45 H 0.96995 * 119.99923 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5699 -0.7207 1.2495 7 7 4.0584 -1.5129 2.3810 8 6 5.3834 -1.6583 2.5797 9 8 6.1715 -1.1330 1.8222 10 6 5.8858 -2.4737 3.7433 11 6 5.3456 -1.9113 5.0597 12 6 5.4854 -3.9219 3.5831 13 6 6.4828 -4.7182 3.8562 14 6 7.7145 -3.9340 4.2448 15 6 7.4318 -2.4929 3.7609 16 7 1.5517 -2.1024 1.2491 17 6 0.3102 -2.3898 1.7504 18 1 -0.3092 -1.5981 2.1453 19 6 -0.1528 -3.6985 1.7499 20 7 0.6019 -4.6632 1.2680 21 14 -1.8466 -4.0903 2.4330 22 1 -2.8529 -3.9965 1.3448 23 1 -1.8488 -5.4660 2.9919 24 1 -2.1848 -3.1198 3.5049 25 1 -0.3635 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.9330 0.3032 1.3393 33 1 3.9337 -1.1547 0.3182 34 1 3.4280 -1.9364 2.9846 35 1 4.2559 -1.9306 5.0430 36 1 5.7071 -2.5183 5.8896 37 1 5.6889 -0.8843 5.1840 38 1 4.5028 -4.2543 3.2824 39 1 6.4340 -5.7962 3.8106 40 1 8.5947 -4.3370 3.7439 41 1 7.8504 -3.9517 5.3261 42 1 7.8361 -2.3291 2.7620 43 1 7.8244 -1.7595 4.4652 44 1 2.1078 -2.8135 0.8941 45 1 0.2783 -5.5776 1.2673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715716571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:48 Heat of formation + Delta-G solvation = -27.890419 kcal Electronic energy + Delta-G solvation = -22993.127842 eV Core-core repulsion = 19817.395787 eV Total energy + Delta-G solvation = -3175.732056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27871 -37.94929 -36.91285 -33.84769 -33.12782 -31.29696 -30.29013 -28.91927 -27.82625 -26.11965 -25.39324 -23.80864 -22.24753 -21.00928 -19.78347 -19.38153 -18.46228 -17.35159 -16.77811 -15.70832 -15.31832 -15.15181 -14.56835 -14.38888 -13.93003 -13.48370 -13.36935 -13.29782 -12.99735 -12.68665 -12.44774 -12.12231 -12.03605 -11.91237 -11.63034 -11.61113 -11.22137 -11.14173 -11.02516 -10.95333 -10.85296 -10.74163 -10.61803 -10.29197 -10.11636 -9.95164 -9.56093 -9.47776 -8.94062 -8.79130 -8.54432 -7.03999 -5.83446 -3.12414 2.28962 3.06897 3.37860 3.44074 3.45475 3.66488 4.52377 4.54057 4.66918 5.02172 5.13994 5.31743 5.34638 5.36803 5.40704 5.53745 5.57796 5.63542 5.70011 5.74561 5.76764 5.85312 5.92712 5.95988 6.02454 6.12568 6.19210 6.19916 6.25212 6.33405 6.37841 6.46781 6.54280 6.61408 6.63435 6.70052 6.94112 6.98628 7.07847 7.28911 7.65196 8.01504 8.33845 8.64665 9.45949 10.01004 10.37178 11.38241 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.005737 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.778017 B = 4879.086066 C = 6400.417428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.113 3.887 7 N -0.709 5.709 8 C 0.524 3.476 9 O -0.555 6.555 10 C -0.059 4.059 11 C -0.132 4.132 12 C -0.147 4.147 13 C -0.164 4.164 14 C -0.100 4.100 15 C -0.106 4.106 16 N -0.721 5.721 17 C -0.236 4.236 18 H 0.073 0.927 19 C -0.010 4.010 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.282 1.282 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.410 0.590 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.544 5.319 5.603 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.059 3.941 5 H 0.071 0.929 6 C -0.012 4.012 7 N -0.360 5.360 8 C 0.310 3.690 9 O -0.434 6.434 10 C -0.062 4.062 11 C -0.189 4.189 12 C -0.166 4.166 13 C -0.182 4.182 14 C -0.137 4.137 15 C -0.144 4.144 16 N -0.362 5.362 17 C -0.367 4.367 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.913 5.690 5.159 12.541 hybrid contribution -1.306 -0.806 0.359 1.576 sum 8.608 4.884 5.518 11.331 Atomic orbital electron populations 1.21817 0.94964 1.03869 0.98969 1.21728 0.96883 0.94412 1.00093 1.21940 1.00494 0.97341 1.00888 1.20540 0.89413 0.88172 0.95927 0.92933 1.21727 0.95582 0.94822 0.89024 1.45980 1.06714 1.52519 1.30754 1.20337 0.82507 0.80361 0.85844 1.90625 1.55640 1.49524 1.47628 1.20666 0.97033 0.93975 0.94533 1.21744 1.01671 1.00704 0.94799 1.23213 1.00175 0.92667 1.00497 1.23260 0.95225 0.99288 1.00383 1.21383 0.97115 0.94471 1.00734 1.22472 0.92502 0.96307 1.03089 1.42451 1.18049 1.01869 1.73824 1.19195 0.92790 0.92339 1.32375 0.90958 1.24718 0.98225 0.95897 1.01839 1.69659 1.36741 0.99860 1.51393 0.86280 0.84513 0.77351 0.78576 1.21781 1.21895 1.20806 0.94079 0.95023 0.89522 0.91924 0.93051 0.93588 0.93219 0.91733 0.92054 0.75377 0.91597 0.91558 0.92070 0.84579 0.85545 0.91159 0.90838 0.89375 0.90815 0.78105 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.26 37.16 0.31 -2.18 16 2 C -0.11 -1.86 2.69 -90.62 -0.24 -2.11 16 3 C -0.15 -2.10 8.84 37.16 0.33 -1.78 16 4 C 0.17 3.11 2.18 -67.94 -0.15 2.96 16 5 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 6 C 0.11 1.94 4.73 -4.04 -0.02 1.92 16 7 N -0.71 -11.96 5.25 -60.29 -0.32 -12.27 16 8 C 0.52 8.92 6.55 -10.98 -0.07 8.85 16 9 O -0.56 -11.04 15.48 5.56 0.09 -10.95 16 10 C -0.06 -0.82 0.74 -155.76 -0.11 -0.93 16 11 C -0.13 -1.55 8.38 37.16 0.31 -1.24 16 12 C -0.15 -2.10 9.37 -35.69 -0.33 -2.43 16 13 C -0.16 -2.04 10.77 -35.69 -0.38 -2.42 16 14 C -0.10 -1.09 6.81 -26.83 -0.18 -1.27 16 15 C -0.11 -1.34 6.01 -25.03 -0.15 -1.49 16 16 N -0.72 -16.09 4.44 -53.43 -0.24 -16.33 16 17 C -0.24 -5.86 7.57 -15.06 -0.11 -5.98 16 18 H 0.07 1.77 7.39 -52.49 -0.39 1.38 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -26.22 13.06 55.49 0.72 -25.50 16 21 Si 0.90 21.24 29.55 -169.99 -5.02 16.21 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 1.84 6.01 -51.93 -0.31 1.53 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.05 6.71 -51.93 -0.35 0.70 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.41 6.99 7.48 -40.82 -0.31 6.68 16 35 H 0.07 0.79 7.50 -51.93 -0.39 0.40 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.29 6.99 -51.93 -0.36 0.93 16 43 H 0.07 0.82 7.89 -51.93 -0.41 0.41 16 44 H 0.38 9.49 7.80 -40.82 -0.32 9.17 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -28.23 355.75 -8.12 -36.35 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -7.80 Total: 15.61 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -0.91 Total: -8.48 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.17 Total: -54.10 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.23 -8.12 -36.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715716571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.462 kcal (2) G-P(sol) polarization free energy of solvation -28.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds