Wall clock time and date at job start Tue Mar 31 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47480 * 2 1 4 4 C 1.52999 * 109.47038 * 120.00284 * 2 1 3 5 5 H 1.08997 * 109.46966 * 299.99403 * 4 2 1 6 6 C 1.52997 * 109.47469 * 59.99974 * 4 2 1 7 7 N 1.46499 * 109.47555 * 175.00230 * 6 4 2 8 8 C 1.34777 * 120.00199 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99750 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99928 * 180.27479 * 8 7 6 11 11 C 1.52995 * 110.34364 * 57.43284 * 10 8 7 12 12 C 1.51100 * 110.38327 * 295.02455 * 10 8 7 13 13 C 1.30532 * 111.10363 * 257.62520 * 12 10 8 14 14 C 1.51104 * 111.10343 * 0.02562 * 13 12 10 15 15 C 1.54628 * 110.38618 * 179.72442 * 10 8 7 16 16 N 1.46504 * 109.47126 * 179.97438 * 4 2 1 17 17 C 1.36939 * 120.00057 * 84.99733 * 16 4 2 18 18 H 1.07998 * 119.99529 * 0.02562 * 17 16 4 19 19 C 1.38813 * 119.99778 * 180.02562 * 17 16 4 20 20 N 1.31613 * 120.00123 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99723 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47212 * 59.99772 * 21 19 17 23 23 H 1.48501 * 109.46975 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47216 * 299.99932 * 21 19 17 25 25 H 1.09006 * 109.47030 * 300.00159 * 1 2 3 26 26 H 1.08998 * 109.46812 * 59.99831 * 1 2 3 27 27 H 1.09001 * 109.47430 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47030 * 239.99840 * 2 1 3 29 29 H 1.08992 * 109.47158 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46777 * 299.99943 * 3 2 1 31 31 H 1.09000 * 109.46426 * 59.99848 * 3 2 1 32 32 H 1.08998 * 109.47382 * 54.99791 * 6 4 2 33 33 H 1.09002 * 109.47216 * 295.00228 * 6 4 2 34 34 H 0.97000 * 119.99484 * 359.97438 * 7 6 4 35 35 H 1.08997 * 109.47268 * 60.70235 * 11 10 8 36 36 H 1.09009 * 109.47137 * 180.70064 * 11 10 8 37 37 H 1.09003 * 109.47593 * 300.69803 * 11 10 8 38 38 H 1.08002 * 124.44857 * 77.61190 * 12 10 8 39 39 H 1.08000 * 124.44349 * 180.02562 * 13 12 10 40 40 H 1.08994 * 110.38736 * 224.75324 * 14 13 12 41 41 H 1.08995 * 110.47850 * 102.42070 * 14 13 12 42 42 H 1.09004 * 111.03956 * 212.21355 * 15 10 8 43 43 H 1.09003 * 111.03960 * 336.14223 * 15 10 8 44 44 H 0.97003 * 120.00175 * 264.99801 * 16 4 2 45 45 H 0.97009 * 119.99761 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3806 8 6 1.8059 -4.1849 2.5820 9 8 1.0447 -4.7516 1.8268 10 6 2.4019 -4.9284 3.7495 11 6 2.0550 -4.2233 5.0622 12 6 3.9002 -5.0433 3.5908 13 6 4.2397 -6.2365 3.1847 14 6 3.0243 -7.1160 3.0042 15 6 1.8960 -6.3894 3.7726 16 7 3.5050 -0.7219 1.2489 17 6 4.1902 0.3528 1.7498 18 1 3.6505 1.2005 2.1454 19 6 5.5783 0.3524 1.7490 20 7 6.2359 -0.6805 1.2664 21 14 6.5130 1.8180 2.4330 22 1 6.1550 2.0107 3.8613 23 1 7.9729 1.5721 2.3168 24 1 6.1541 3.0367 1.6640 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.8183 -2.6511 0.3178 33 1 0.4436 -2.1651 1.3387 34 1 2.7231 -2.4351 2.9844 35 1 0.9724 -4.1976 5.1858 36 1 2.5030 -4.7654 5.8952 37 1 2.4427 -3.2048 5.0412 38 1 4.5985 -4.2432 3.7874 39 1 5.2558 -6.5533 3.0017 40 1 3.2019 -8.1018 3.4339 41 1 2.7701 -7.2031 1.9479 42 1 1.8165 -6.7599 4.7946 43 1 0.9442 -6.4822 3.2496 44 1 3.9897 -1.4834 0.8939 45 1 7.2059 -0.6808 1.2662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715716575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:55 Heat of formation + Delta-G solvation = -27.279649 kcal Electronic energy + Delta-G solvation = -23073.640637 eV Core-core repulsion = 19897.935066 eV Total energy + Delta-G solvation = -3175.705571 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.31613 -37.85136 -36.80186 -33.86054 -33.12263 -31.49630 -30.30992 -28.86705 -27.86235 -26.11268 -24.95896 -23.82322 -22.36019 -21.12941 -19.80282 -19.35124 -18.46868 -17.27834 -16.69903 -15.82820 -15.21720 -15.16619 -14.52179 -14.36726 -13.93809 -13.57100 -13.34490 -13.30774 -12.99068 -12.70401 -12.32345 -12.08414 -12.03052 -11.80544 -11.71975 -11.62622 -11.13230 -11.06426 -10.98228 -10.90891 -10.82867 -10.71952 -10.59866 -10.30358 -10.12367 -9.95541 -9.68824 -9.54202 -8.93309 -8.68891 -8.52772 -7.03489 -5.82574 -3.11702 2.31063 3.07195 3.38392 3.44116 3.45000 3.67860 4.52786 4.57757 4.71772 4.99042 5.17373 5.32760 5.34871 5.40046 5.48172 5.54276 5.59390 5.63753 5.75791 5.76359 5.81221 5.87873 5.93739 6.00574 6.02613 6.12502 6.15928 6.20534 6.25330 6.37547 6.38143 6.47133 6.54596 6.63185 6.63765 6.70279 6.97642 6.98989 7.08048 7.29551 7.65082 8.01971 8.34515 8.64822 9.46541 10.01720 10.37917 11.38936 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014179 B = 0.005810 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.297619 B = 4818.372569 C = 6211.756988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.113 3.887 7 N -0.708 5.708 8 C 0.527 3.473 9 O -0.555 6.555 10 C -0.059 4.059 11 C -0.135 4.135 12 C -0.152 4.152 13 C -0.158 4.158 14 C -0.100 4.100 15 C -0.107 4.107 16 N -0.720 5.720 17 C -0.237 4.237 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.928 5.928 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.286 1.286 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.410 0.590 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.284 -7.237 5.008 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.011 4.011 7 N -0.358 5.358 8 C 0.313 3.687 9 O -0.434 6.434 10 C -0.062 4.062 11 C -0.193 4.193 12 C -0.170 4.170 13 C -0.176 4.176 14 C -0.137 4.137 15 C -0.144 4.144 16 N -0.362 5.362 17 C -0.368 4.368 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.576 5.576 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.246 0.754 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.152 0.848 39 H 0.144 0.856 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.749 -7.462 4.549 12.366 hybrid contribution 1.211 0.965 0.346 1.587 sum -7.538 -6.497 4.895 11.090 Atomic orbital electron populations 1.21938 0.96886 1.00942 1.00889 1.21732 0.93523 0.97781 1.00097 1.21815 1.04192 0.94632 0.98957 1.20541 0.86406 0.91175 0.95919 0.92941 1.21723 0.97181 0.93213 0.89008 1.45958 1.48321 1.10835 1.30713 1.20236 0.80746 0.81945 0.85792 1.90619 1.37097 1.67931 1.47723 1.20626 0.94382 0.96719 0.94503 1.21790 1.01688 1.00743 0.95068 1.23147 0.94187 0.98350 1.01325 1.23333 0.98887 0.96058 0.99321 1.21370 0.92955 0.98297 1.01124 1.22455 0.99647 0.91795 1.00526 1.42449 0.98711 1.21182 1.73834 1.19147 0.88756 0.96399 1.32493 0.91022 1.24715 0.96458 0.97654 1.01809 1.69654 1.06937 1.29794 1.51239 0.86359 0.79127 0.82439 0.78781 1.21340 1.21820 1.21298 0.93217 0.93589 0.93059 0.91934 0.89510 0.95033 0.94088 0.92089 0.91736 0.75377 0.92190 0.91517 0.91684 0.84786 0.85568 0.91342 0.90443 0.90799 0.89358 0.78082 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.84 37.16 0.33 -1.78 16 2 C -0.11 -1.88 2.69 -90.62 -0.24 -2.12 16 3 C -0.14 -2.49 8.26 37.16 0.31 -2.19 16 4 C 0.17 3.13 2.18 -67.93 -0.15 2.98 16 5 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 6 C 0.11 1.96 4.73 -4.04 -0.02 1.94 16 7 N -0.71 -12.03 5.25 -60.29 -0.32 -12.34 16 8 C 0.53 8.98 6.54 -10.98 -0.07 8.91 16 9 O -0.55 -10.94 15.46 5.55 0.09 -10.85 16 10 C -0.06 -0.82 0.74 -155.76 -0.12 -0.94 16 11 C -0.14 -1.59 8.39 37.15 0.31 -1.28 16 12 C -0.15 -2.17 9.37 -35.70 -0.33 -2.50 16 13 C -0.16 -2.10 10.78 -35.70 -0.38 -2.48 16 14 C -0.10 -1.25 6.81 -26.82 -0.18 -1.43 16 15 C -0.11 -1.35 6.03 -25.01 -0.15 -1.50 16 16 N -0.72 -16.18 4.44 -53.43 -0.24 -16.42 16 17 C -0.24 -5.91 7.57 -15.06 -0.11 -6.02 16 18 H 0.07 1.75 7.40 -52.49 -0.39 1.37 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -26.30 13.06 55.49 0.72 -25.58 16 21 Si 0.90 21.26 29.55 -169.99 -5.02 16.23 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.09 1.85 6.01 -51.93 -0.31 1.54 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.05 6.71 -51.93 -0.35 0.71 16 34 H 0.41 7.06 7.46 -40.82 -0.30 6.75 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.06 0.78 7.49 -51.93 -0.39 0.39 16 38 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16 39 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 0.78 7.91 -51.93 -0.41 0.37 16 43 H 0.09 1.23 6.95 -51.93 -0.36 0.87 16 44 H 0.39 9.56 7.80 -40.82 -0.32 9.25 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -28.24 355.70 -8.12 -36.36 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -7.80 Total: 16.01 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.91 Total: -8.77 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.17 Total: -54.34 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.24 -8.12 -36.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715716575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.083 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds