Wall clock time and date at job start Tue Mar 31 2020 01:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47480 * 2 1 4 4 C 1.52999 * 109.47038 * 120.00284 * 2 1 3 5 5 H 1.08997 * 109.46966 * 299.99403 * 4 2 1 6 6 C 1.52997 * 109.47469 * 59.99974 * 4 2 1 7 7 N 1.46499 * 109.47555 * 175.00230 * 6 4 2 8 8 C 1.34777 * 120.00199 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99750 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99928 * 180.27479 * 8 7 6 11 11 C 1.52995 * 110.34364 * 57.43284 * 10 8 7 12 12 C 1.51100 * 110.38327 * 295.02455 * 10 8 7 13 13 C 1.30532 * 111.10363 * 257.62520 * 12 10 8 14 14 C 1.51104 * 111.10343 * 0.02562 * 13 12 10 15 15 C 1.54628 * 110.38618 * 179.72442 * 10 8 7 16 16 N 1.46504 * 109.47126 * 179.97438 * 4 2 1 17 17 C 1.36939 * 120.00057 * 84.99733 * 16 4 2 18 18 H 1.07998 * 119.99529 * 0.02562 * 17 16 4 19 19 C 1.38813 * 119.99778 * 180.02562 * 17 16 4 20 20 N 1.31613 * 120.00123 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99723 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47212 * 59.99772 * 21 19 17 23 23 H 1.48501 * 109.46975 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47216 * 299.99932 * 21 19 17 25 25 H 1.09006 * 109.47030 * 300.00159 * 1 2 3 26 26 H 1.08998 * 109.46812 * 59.99831 * 1 2 3 27 27 H 1.09001 * 109.47430 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47030 * 239.99840 * 2 1 3 29 29 H 1.08992 * 109.47158 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46777 * 299.99943 * 3 2 1 31 31 H 1.09000 * 109.46426 * 59.99848 * 3 2 1 32 32 H 1.08998 * 109.47382 * 54.99791 * 6 4 2 33 33 H 1.09002 * 109.47216 * 295.00228 * 6 4 2 34 34 H 0.97000 * 119.99484 * 359.97438 * 7 6 4 35 35 H 1.08997 * 109.47268 * 60.70235 * 11 10 8 36 36 H 1.09009 * 109.47137 * 180.70064 * 11 10 8 37 37 H 1.09003 * 109.47593 * 300.69803 * 11 10 8 38 38 H 1.08002 * 124.44857 * 77.61190 * 12 10 8 39 39 H 1.08000 * 124.44349 * 180.02562 * 13 12 10 40 40 H 1.08994 * 110.38736 * 224.75324 * 14 13 12 41 41 H 1.08995 * 110.47850 * 102.42070 * 14 13 12 42 42 H 1.09004 * 111.03956 * 212.21355 * 15 10 8 43 43 H 1.09003 * 111.03960 * 336.14223 * 15 10 8 44 44 H 0.97003 * 120.00175 * 264.99801 * 16 4 2 45 45 H 0.97009 * 119.99761 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3806 8 6 1.8059 -4.1849 2.5820 9 8 1.0447 -4.7516 1.8268 10 6 2.4019 -4.9284 3.7495 11 6 2.0550 -4.2233 5.0622 12 6 3.9002 -5.0433 3.5908 13 6 4.2397 -6.2365 3.1847 14 6 3.0243 -7.1160 3.0042 15 6 1.8960 -6.3894 3.7726 16 7 3.5050 -0.7219 1.2489 17 6 4.1902 0.3528 1.7498 18 1 3.6505 1.2005 2.1454 19 6 5.5783 0.3524 1.7490 20 7 6.2359 -0.6805 1.2664 21 14 6.5130 1.8180 2.4330 22 1 6.1550 2.0107 3.8613 23 1 7.9729 1.5721 2.3168 24 1 6.1541 3.0367 1.6640 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.8183 -2.6511 0.3178 33 1 0.4436 -2.1651 1.3387 34 1 2.7231 -2.4351 2.9844 35 1 0.9724 -4.1976 5.1858 36 1 2.5030 -4.7654 5.8952 37 1 2.4427 -3.2048 5.0412 38 1 4.5985 -4.2432 3.7874 39 1 5.2558 -6.5533 3.0017 40 1 3.2019 -8.1018 3.4339 41 1 2.7701 -7.2031 1.9479 42 1 1.8165 -6.7599 4.7946 43 1 0.9442 -6.4822 3.2496 44 1 3.9897 -1.4834 0.8939 45 1 7.2059 -0.6808 1.2662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715716575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:54 Heat of formation + Delta-G solvation = -43.695325 kcal Electronic energy + Delta-G solvation = -23074.352474 eV Core-core repulsion = 19897.935066 eV Total energy + Delta-G solvation = -3176.417408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55713 -39.23025 -38.18768 -35.30480 -34.91063 -32.63190 -32.01349 -29.98132 -29.31681 -27.47391 -26.11780 -25.48099 -23.81745 -22.47268 -21.09593 -20.64670 -19.77882 -19.03270 -17.98095 -17.17996 -16.85113 -16.44750 -15.90963 -15.72894 -15.53526 -15.05224 -14.92987 -14.59171 -14.16481 -13.99772 -13.73332 -13.43709 -13.23660 -12.91460 -12.84773 -12.80447 -12.73993 -12.70617 -12.48026 -12.28259 -12.11770 -12.05573 -12.02702 -11.77514 -11.66713 -11.44003 -11.28014 -11.00320 -10.78815 -9.98167 -9.81378 -8.94436 -7.85718 -5.12854 1.19374 1.51028 1.52097 1.57292 1.74747 2.35974 2.60748 3.46914 3.53511 3.66378 3.83758 3.90777 3.94148 4.10348 4.28917 4.30656 4.33439 4.45336 4.49645 4.59153 4.64502 4.75827 4.80500 4.82057 4.92261 4.93110 4.98398 5.02838 5.06750 5.14396 5.15581 5.21693 5.26626 5.33485 5.37320 5.55493 5.57686 5.62288 5.65146 5.77322 5.90135 6.33520 6.63060 7.27616 7.41758 8.12854 8.38614 9.36631 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014179 B = 0.005810 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.297619 B = 4818.372569 C = 6211.756988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.173 3.827 5 H 0.057 0.943 6 C 0.122 3.878 7 N -0.708 5.708 8 C 0.523 3.477 9 O -0.585 6.585 10 C -0.057 4.057 11 C -0.131 4.131 12 C -0.171 4.171 13 C -0.153 4.153 14 C -0.101 4.101 15 C -0.104 4.104 16 N -0.726 5.726 17 C -0.216 4.216 18 H 0.079 0.921 19 C -0.070 4.070 20 N -0.965 5.965 21 Si 0.957 3.043 22 H -0.279 1.279 23 H -0.304 1.304 24 H -0.284 1.284 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.409 0.591 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.123 0.877 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.371 0.629 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.711 -7.188 6.117 13.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.191 4.191 4 C 0.064 3.936 5 H 0.075 0.925 6 C -0.003 4.003 7 N -0.357 5.357 8 C 0.310 3.690 9 O -0.466 6.466 10 C -0.060 4.060 11 C -0.189 4.189 12 C -0.190 4.190 13 C -0.171 4.171 14 C -0.138 4.138 15 C -0.141 4.141 16 N -0.365 5.365 17 C -0.347 4.347 18 H 0.096 0.904 19 C -0.262 4.262 20 N -0.616 5.616 21 Si 0.788 3.212 22 H -0.205 1.205 23 H -0.231 1.231 24 H -0.210 1.210 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.245 0.755 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.141 0.859 39 H 0.156 0.844 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.203 0.797 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.226 -7.385 5.672 13.830 hybrid contribution 1.575 0.939 -0.048 1.834 sum -8.651 -6.445 5.624 12.166 Atomic orbital electron populations 1.21844 0.93940 1.01799 1.02196 1.21632 0.95930 0.96833 0.98445 1.21722 1.01631 0.95439 1.00296 1.20673 0.84041 0.92150 0.96720 0.92513 1.21607 0.97926 0.92215 0.88533 1.45988 1.48188 1.11132 1.30440 1.20864 0.80159 0.81705 0.86290 1.90599 1.38527 1.68409 1.49025 1.20676 0.93928 0.97374 0.94047 1.21792 1.02256 1.00420 0.94414 1.23139 0.94289 0.98584 1.02941 1.23610 0.99899 0.95875 0.97695 1.21402 0.92398 0.99569 1.00403 1.22486 0.98833 0.90870 1.01938 1.42546 1.00413 1.20075 1.73508 1.19420 0.88795 0.96518 1.30003 0.90364 1.25332 0.97535 0.99803 1.03543 1.69803 1.06327 1.31679 1.53839 0.85452 0.77241 0.79987 0.78509 1.20492 1.23094 1.21033 0.92134 0.92082 0.92459 0.93352 0.93264 0.93100 0.93369 0.93832 0.90178 0.75494 0.91510 0.89533 0.92304 0.85884 0.84363 0.88574 0.92009 0.88068 0.90761 0.79671 0.94500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.84 71.98 0.64 -2.95 16 2 C -0.11 -3.52 2.69 -10.79 -0.03 -3.55 16 3 C -0.13 -4.61 8.26 71.98 0.59 -4.01 16 4 C 0.17 6.24 2.18 44.99 0.10 6.33 16 5 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 6 C 0.12 4.16 4.73 86.38 0.41 4.57 16 7 N -0.71 -23.99 5.25 -463.06 -2.43 -26.42 16 8 C 0.52 17.68 6.54 87.66 0.57 18.26 16 9 O -0.58 -23.03 15.46 -3.04 -0.05 -23.08 16 10 C -0.06 -1.54 0.74 -52.99 -0.04 -1.58 16 11 C -0.13 -2.87 8.39 71.98 0.60 -2.26 16 12 C -0.17 -4.80 9.37 26.26 0.25 -4.55 16 13 C -0.15 -3.90 10.78 26.26 0.28 -3.61 16 14 C -0.10 -2.35 6.81 30.54 0.21 -2.15 16 15 C -0.10 -2.45 6.03 31.71 0.19 -2.26 16 16 N -0.73 -32.85 4.44 -322.94 -1.43 -34.28 16 17 C -0.22 -10.74 7.57 84.03 0.64 -10.10 16 18 H 0.08 3.75 7.40 -2.91 -0.02 3.73 16 19 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 20 N -0.97 -56.06 13.06 21.65 0.28 -55.77 16 21 Si 0.96 44.08 29.55 68.60 2.03 46.11 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 25 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.41 6.54 -2.39 -0.02 1.39 16 28 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.05 2.07 6.01 -2.39 -0.01 2.06 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 2.51 6.71 -2.39 -0.02 2.49 16 34 H 0.41 14.12 7.46 -92.71 -0.69 13.43 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.06 1.34 7.49 -2.39 -0.02 1.33 16 38 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.10 1.83 7.91 -2.38 -0.02 1.81 16 43 H 0.07 1.99 6.95 -2.39 -0.02 1.97 16 44 H 0.37 18.91 7.80 -92.71 -0.72 18.19 16 45 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 Total: -1.00 -60.90 355.70 2.83 -58.07 By element: Atomic # 1 Polarization: 46.98 SS G_CDS: -0.45 Total: 46.53 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 4.88 Total: -11.15 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -3.58 Total: -116.48 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.05 Total: -23.08 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -60.90 2.83 -58.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715716575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.374 kcal (2) G-P(sol) polarization free energy of solvation -60.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds