Wall clock time and date at job start Tue Mar 31 2020 03:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00002 * 2 1 4 4 C 1.53000 * 109.46912 * 125.00530 * 3 2 1 5 5 C 1.50703 * 109.46912 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99985 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00161 * 179.97438 * 5 4 3 8 8 C 1.46927 * 120.62690 * 359.72483 * 7 5 4 9 9 C 1.53625 * 108.54281 * 126.36660 * 8 7 5 10 10 C 1.53039 * 109.24187 * 54.85513 * 9 8 7 11 11 H 1.09001 * 109.45858 * 58.53240 * 10 9 8 12 12 N 1.46499 * 109.45920 * 178.49183 * 10 9 8 13 13 C 1.36939 * 119.99842 * 275.06595 * 12 10 9 14 14 H 1.08001 * 120.00135 * 0.02562 * 13 12 10 15 15 C 1.38818 * 119.99795 * 180.02562 * 13 12 10 16 16 N 1.31614 * 120.00053 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99654 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47123 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46829 * 120.00304 * 17 15 13 20 20 H 1.48500 * 109.46787 * 240.00005 * 17 15 13 21 21 C 1.53041 * 109.53894 * 298.50866 * 10 9 8 22 22 H 1.08997 * 109.49584 * 301.41833 * 21 10 9 23 23 C 1.52999 * 109.52546 * 181.33182 * 21 10 9 24 24 C 1.53002 * 109.46852 * 175.14806 * 23 21 10 25 25 C 1.46923 * 120.63085 * 180.02562 * 7 5 4 26 26 H 1.07996 * 120.00097 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99862 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00097 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47152 * 5.00302 * 3 2 1 30 30 H 1.09001 * 109.46980 * 245.00403 * 3 2 1 31 31 H 1.09001 * 109.47194 * 299.99742 * 4 3 2 32 32 H 1.08992 * 109.47399 * 59.99914 * 4 3 2 33 33 H 1.09009 * 109.58359 * 246.19642 * 8 7 5 34 34 H 1.09001 * 109.59276 * 6.62239 * 8 7 5 35 35 H 1.08997 * 109.63215 * 294.86392 * 9 8 7 36 36 H 1.09000 * 109.42872 * 174.72328 * 9 8 7 37 37 H 0.96996 * 120.00341 * 95.07061 * 12 10 9 38 38 H 0.97001 * 120.00151 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47185 * 295.14500 * 23 21 10 40 40 H 1.09003 * 109.46781 * 55.14781 * 23 21 10 41 41 H 1.09000 * 109.47043 * 180.02562 * 24 23 21 42 42 H 1.08998 * 109.46975 * 299.99822 * 24 23 21 43 43 H 1.08995 * 109.47350 * 60.00051 * 24 23 21 44 44 H 1.08995 * 109.58853 * 353.37079 * 25 7 5 45 45 H 1.09000 * 109.58736 * 113.80496 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7891 2.6379 1.1812 6 8 3.5704 3.4643 0.3209 7 7 4.7056 2.8869 2.1375 8 6 4.9763 1.8985 3.1903 9 6 6.4856 1.6132 3.2162 10 6 7.2453 2.9314 3.3818 11 1 6.9281 3.4201 4.3030 12 7 8.6838 2.6613 3.4432 13 6 9.2671 2.3256 4.6358 14 1 8.6665 2.2595 5.5310 15 6 10.6303 2.0702 4.6941 16 7 11.3623 2.1511 3.6033 17 14 11.4258 1.6115 6.3209 18 1 10.3932 1.5884 7.3878 19 1 12.0485 0.2682 6.2061 20 1 12.4682 2.6127 6.6618 21 6 6.9487 3.8461 2.1911 22 1 7.2429 3.3478 1.2675 23 6 7.7342 5.1506 2.3403 24 6 7.5322 6.0129 1.0927 25 6 5.4482 4.1546 2.1507 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 2.4774 1.2355 2.1130 32 1 3.7400 0.5065 1.0920 33 1 4.6602 2.2962 4.1548 34 1 4.4328 0.9783 2.9763 35 1 6.7842 1.1360 2.2829 36 1 6.7156 0.9533 4.0527 37 1 9.2232 2.7203 2.6392 38 1 12.3148 1.9723 3.6440 39 1 7.3778 5.6910 3.2172 40 1 8.7941 4.9249 2.4584 41 1 8.0922 6.9421 1.1988 42 1 7.8886 5.4724 0.2158 43 1 6.4724 6.2385 0.9746 44 1 5.2162 4.7234 1.2503 45 1 5.1698 4.7320 3.0322 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716632823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:47 Heat of formation + Delta-G solvation = -25.744726 kcal Electronic energy + Delta-G solvation = -22561.818249 eV Core-core repulsion = 19386.179237 eV Total energy + Delta-G solvation = -3175.639012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.16873 -37.91573 -35.52141 -34.71901 -33.78456 -31.72151 -30.99478 -29.47886 -28.60040 -25.57969 -24.13260 -23.59050 -22.58695 -20.81714 -20.03303 -19.75187 -18.77629 -17.14829 -16.96620 -15.90276 -15.84714 -15.12642 -14.86627 -14.16188 -14.00352 -13.91538 -13.68796 -13.32063 -13.18615 -13.09434 -12.73824 -12.58579 -12.28225 -12.04376 -11.73964 -11.59189 -11.31487 -11.21431 -11.18388 -10.95625 -10.86457 -10.70765 -10.34919 -10.19882 -10.14282 -9.80513 -9.68464 -9.60230 -9.48009 -8.92315 -8.44308 -6.98405 -5.79814 -3.08489 2.04701 2.72305 3.14765 3.40275 3.46054 3.48331 4.46345 4.55622 4.75293 4.93069 4.96862 5.09812 5.13357 5.23557 5.28535 5.35544 5.39920 5.49837 5.58013 5.60138 5.63031 5.69124 5.70313 5.79832 5.90539 5.99094 6.02863 6.13139 6.15870 6.31418 6.35884 6.39872 6.41552 6.45972 6.55096 6.58505 6.68420 6.82468 6.95701 7.05048 7.55177 7.67006 8.27655 8.38366 9.49953 10.07505 10.42363 11.42669 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.003938 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.985290 B = 7108.106580 C = 8097.819794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.079 4.079 4 C -0.135 4.135 5 C 0.512 3.488 6 O -0.552 6.552 7 N -0.607 5.607 8 C 0.106 3.894 9 C -0.151 4.151 10 C 0.183 3.817 11 H 0.047 0.953 12 N -0.721 5.721 13 C -0.237 4.237 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.931 5.931 17 Si 0.904 3.096 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.104 4.104 22 H 0.069 0.931 23 C -0.112 4.112 24 C -0.152 4.152 25 C 0.118 3.882 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.509 -0.818 -4.184 18.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.117 4.117 4 C -0.175 4.175 5 C 0.301 3.699 6 O -0.430 6.430 7 N -0.340 5.340 8 C -0.018 4.018 9 C -0.193 4.193 10 C 0.073 3.927 11 H 0.065 0.935 12 N -0.361 5.361 13 C -0.369 4.369 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.580 5.580 17 Si 0.736 3.264 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.219 1.219 21 C -0.124 4.124 22 H 0.087 0.913 23 C -0.150 4.150 24 C -0.210 4.210 25 C -0.004 4.004 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.218 0.782 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.554 -0.408 -4.441 18.112 hybrid contribution 0.813 -0.498 0.759 1.219 sum -16.741 -0.906 -3.682 17.165 Atomic orbital electron populations 1.23858 0.95977 1.01784 1.01706 1.23013 0.96091 0.98497 0.99403 1.20514 0.97780 0.95205 0.98197 1.21641 0.98909 0.96121 1.00846 1.20660 0.79638 0.88853 0.80753 1.90662 1.66366 1.48552 1.37453 1.48206 1.38940 1.18915 1.27924 1.21976 0.98199 0.91365 0.90224 1.22760 0.92177 1.01721 1.02609 1.20184 0.86107 0.91410 0.95006 0.93469 1.42423 1.01747 1.82764 1.09149 1.19257 0.91250 1.38741 0.87619 0.91196 1.24730 0.96449 1.02723 0.96979 1.69666 1.05936 1.55981 1.26382 0.86162 0.79327 0.77713 0.83243 1.20591 1.21953 1.21924 1.21785 0.93242 0.97178 1.00191 0.91266 1.21450 1.02200 0.94318 0.97019 1.21842 1.00873 0.99644 0.98623 1.21745 0.91058 0.84913 1.02712 0.88592 0.88584 0.87287 0.90842 0.90208 0.88964 0.88702 0.91482 0.90392 0.92169 0.90615 0.78208 0.93570 0.92487 0.89818 0.93180 0.93009 0.93223 0.89205 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.55 14.32 29.01 0.42 -1.13 16 2 C -0.15 -1.30 9.52 -36.02 -0.34 -1.64 16 3 C -0.08 -0.81 4.95 -27.88 -0.14 -0.94 16 4 C -0.14 -1.38 4.03 -27.88 -0.11 -1.50 16 5 C 0.51 7.18 7.70 -10.98 -0.08 7.10 16 6 O -0.55 -9.51 15.39 5.56 0.09 -9.42 16 7 N -0.61 -8.40 2.97 -172.47 -0.51 -8.91 16 8 C 0.11 1.32 6.37 -3.48 -0.02 1.29 16 9 C -0.15 -2.44 5.67 -26.39 -0.15 -2.59 16 10 C 0.18 3.39 2.19 -67.89 -0.15 3.24 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 12 N -0.72 -16.99 4.33 -53.38 -0.23 -17.22 16 13 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 14 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 17 Si 0.90 21.82 29.55 -169.99 -5.02 16.80 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 C -0.10 -1.70 1.93 -90.47 -0.17 -1.87 16 22 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 23 C -0.11 -1.81 5.31 -26.73 -0.14 -1.96 16 24 C -0.15 -2.14 9.67 37.16 0.36 -1.78 16 25 C 0.12 1.73 5.32 -3.69 -0.02 1.71 16 26 H 0.10 0.73 7.84 -52.49 -0.41 0.32 16 27 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 28 H 0.11 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 30 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.09 0.80 7.93 -51.93 -0.41 0.39 16 32 H 0.09 0.87 7.70 -51.93 -0.40 0.47 16 33 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.08 0.78 5.93 -51.93 -0.31 0.47 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.38 9.83 7.51 -40.82 -0.31 9.52 16 38 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.62 7.22 -51.93 -0.37 1.25 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 44 H 0.09 1.38 5.72 -51.93 -0.30 1.09 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -30.15 356.91 -8.26 -38.41 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -7.87 Total: 8.60 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.80 Total: -6.94 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.02 Total: -52.82 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.15 -8.26 -38.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.662 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds