Wall clock time and date at job start Tue Mar 31 2020 03:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00002 * 2 1 4 4 C 1.53000 * 109.46912 * 125.00530 * 3 2 1 5 5 C 1.50703 * 109.46912 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99985 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00161 * 179.97438 * 5 4 3 8 8 C 1.46927 * 120.62690 * 359.72483 * 7 5 4 9 9 C 1.53625 * 108.54281 * 126.36660 * 8 7 5 10 10 C 1.53039 * 109.24187 * 54.85513 * 9 8 7 11 11 H 1.09001 * 109.45858 * 58.53240 * 10 9 8 12 12 N 1.46499 * 109.45920 * 178.49183 * 10 9 8 13 13 C 1.36939 * 119.99842 * 275.06595 * 12 10 9 14 14 H 1.08001 * 120.00135 * 0.02562 * 13 12 10 15 15 C 1.38818 * 119.99795 * 180.02562 * 13 12 10 16 16 N 1.31614 * 120.00053 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99654 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47123 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46829 * 120.00304 * 17 15 13 20 20 H 1.48500 * 109.46787 * 240.00005 * 17 15 13 21 21 C 1.53041 * 109.53894 * 298.50866 * 10 9 8 22 22 H 1.08997 * 109.49584 * 301.41833 * 21 10 9 23 23 C 1.52999 * 109.52546 * 181.33182 * 21 10 9 24 24 C 1.53002 * 109.46852 * 175.14806 * 23 21 10 25 25 C 1.46923 * 120.63085 * 180.02562 * 7 5 4 26 26 H 1.07996 * 120.00097 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99862 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00097 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47152 * 5.00302 * 3 2 1 30 30 H 1.09001 * 109.46980 * 245.00403 * 3 2 1 31 31 H 1.09001 * 109.47194 * 299.99742 * 4 3 2 32 32 H 1.08992 * 109.47399 * 59.99914 * 4 3 2 33 33 H 1.09009 * 109.58359 * 246.19642 * 8 7 5 34 34 H 1.09001 * 109.59276 * 6.62239 * 8 7 5 35 35 H 1.08997 * 109.63215 * 294.86392 * 9 8 7 36 36 H 1.09000 * 109.42872 * 174.72328 * 9 8 7 37 37 H 0.96996 * 120.00341 * 95.07061 * 12 10 9 38 38 H 0.97001 * 120.00151 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47185 * 295.14500 * 23 21 10 40 40 H 1.09003 * 109.46781 * 55.14781 * 23 21 10 41 41 H 1.09000 * 109.47043 * 180.02562 * 24 23 21 42 42 H 1.08998 * 109.46975 * 299.99822 * 24 23 21 43 43 H 1.08995 * 109.47350 * 60.00051 * 24 23 21 44 44 H 1.08995 * 109.58853 * 353.37079 * 25 7 5 45 45 H 1.09000 * 109.58736 * 113.80496 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7891 2.6379 1.1812 6 8 3.5704 3.4643 0.3209 7 7 4.7056 2.8869 2.1375 8 6 4.9763 1.8985 3.1903 9 6 6.4856 1.6132 3.2162 10 6 7.2453 2.9314 3.3818 11 1 6.9281 3.4201 4.3030 12 7 8.6838 2.6613 3.4432 13 6 9.2671 2.3256 4.6358 14 1 8.6665 2.2595 5.5310 15 6 10.6303 2.0702 4.6941 16 7 11.3623 2.1511 3.6033 17 14 11.4258 1.6115 6.3209 18 1 10.3932 1.5884 7.3878 19 1 12.0485 0.2682 6.2061 20 1 12.4682 2.6127 6.6618 21 6 6.9487 3.8461 2.1911 22 1 7.2429 3.3478 1.2675 23 6 7.7342 5.1506 2.3403 24 6 7.5322 6.0129 1.0927 25 6 5.4482 4.1546 2.1507 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 2.4774 1.2355 2.1130 32 1 3.7400 0.5065 1.0920 33 1 4.6602 2.2962 4.1548 34 1 4.4328 0.9783 2.9763 35 1 6.7842 1.1360 2.2829 36 1 6.7156 0.9533 4.0527 37 1 9.2232 2.7203 2.6392 38 1 12.3148 1.9723 3.6440 39 1 7.3778 5.6910 3.2172 40 1 8.7941 4.9249 2.4584 41 1 8.0922 6.9421 1.1988 42 1 7.8886 5.4724 0.2158 43 1 6.4724 6.2385 0.9746 44 1 5.2162 4.7234 1.2503 45 1 5.1698 4.7320 3.0322 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716632823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:46 Heat of formation + Delta-G solvation = -42.735552 kcal Electronic energy + Delta-G solvation = -22562.555026 eV Core-core repulsion = 19386.179237 eV Total energy + Delta-G solvation = -3176.375789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32939 -39.22351 -36.32243 -36.13524 -35.30279 -33.42972 -31.83773 -31.02323 -29.87978 -26.93342 -25.54832 -24.77648 -23.97569 -22.18819 -21.16423 -20.64377 -19.94793 -19.02560 -18.08676 -16.99540 -16.82643 -16.73628 -15.92050 -15.58327 -15.52940 -15.13694 -14.82575 -14.72543 -14.53055 -14.35046 -13.78098 -13.71201 -13.45202 -13.20665 -13.02833 -12.88623 -12.80518 -12.63890 -12.53818 -12.13768 -12.05966 -11.93435 -11.87881 -11.81738 -11.57847 -11.51773 -11.08450 -10.93737 -10.71436 -10.18801 -9.62724 -8.94837 -7.90188 -5.17585 1.42095 1.49033 1.49554 1.58971 1.64607 2.08372 2.58712 3.43179 3.52778 3.78344 3.82504 3.99983 4.02577 4.09134 4.19605 4.24324 4.34632 4.36252 4.46373 4.46636 4.49667 4.64163 4.68295 4.77498 4.81700 4.85502 4.92388 4.95690 5.02516 5.06966 5.11055 5.16800 5.23705 5.30289 5.39236 5.47983 5.53337 5.59660 5.68269 5.79205 5.93711 6.31263 6.46646 7.18779 7.37825 8.14182 8.37251 9.33592 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.003938 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.985290 B = 7108.106580 C = 8097.819794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C -0.076 4.076 4 C -0.129 4.129 5 C 0.508 3.492 6 O -0.589 6.589 7 N -0.610 5.610 8 C 0.114 3.886 9 C -0.143 4.143 10 C 0.178 3.822 11 H 0.047 0.953 12 N -0.732 5.732 13 C -0.227 4.227 14 H 0.078 0.922 15 C -0.078 4.078 16 N -0.971 5.971 17 Si 0.967 3.033 18 H -0.263 1.263 19 H -0.298 1.298 20 H -0.299 1.299 21 C -0.092 4.092 22 H 0.050 0.950 23 C -0.107 4.107 24 C -0.145 4.145 25 C 0.125 3.875 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.370 0.630 38 H 0.248 0.752 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.044 0.956 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.938 -1.589 -3.051 20.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.178 4.178 3 C -0.114 4.114 4 C -0.168 4.168 5 C 0.298 3.702 6 O -0.470 6.470 7 N -0.341 5.341 8 C -0.009 4.009 9 C -0.184 4.184 10 C 0.069 3.931 11 H 0.065 0.935 12 N -0.371 5.371 13 C -0.359 4.359 14 H 0.096 0.904 15 C -0.270 4.270 16 N -0.623 5.623 17 Si 0.797 3.203 18 H -0.188 1.188 19 H -0.225 1.225 20 H -0.227 1.227 21 C -0.112 4.112 22 H 0.068 0.932 23 C -0.146 4.146 24 C -0.203 4.203 25 C 0.002 3.998 26 H 0.113 0.887 27 H 0.129 0.871 28 H 0.140 0.860 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.201 0.799 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.047 -1.187 -3.281 20.348 hybrid contribution 1.486 -0.214 0.368 1.546 sum -18.561 -1.401 -2.912 18.840 Atomic orbital electron populations 1.24035 0.95910 1.02524 1.00436 1.22987 0.96281 0.98017 1.00495 1.20441 0.97534 0.95918 0.97514 1.21692 0.98971 0.94109 1.02022 1.21362 0.79373 0.89697 0.79764 1.90648 1.67515 1.50066 1.38752 1.48297 1.38768 1.18744 1.28339 1.22028 0.95429 0.92673 0.90751 1.22554 0.94789 0.99563 1.01503 1.20430 0.83658 0.93142 0.95826 0.93512 1.42608 1.03864 1.82778 1.07813 1.19632 0.91371 1.36256 0.88656 0.90378 1.25483 0.97321 1.04243 0.99911 1.69826 1.05677 1.58344 1.28419 0.85159 0.78371 0.76610 0.80169 1.18764 1.22513 1.22656 1.21630 0.94843 0.96522 0.98225 0.93193 1.21358 0.99814 0.94845 0.98544 1.21773 1.01922 0.99500 0.97064 1.21601 0.89440 0.85732 1.03077 0.88712 0.87059 0.86007 0.91972 0.91904 0.86443 0.87084 0.89645 0.86965 0.93586 0.91375 0.79861 0.94338 0.91735 0.93519 0.92097 0.93689 0.91825 0.89863 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 14.32 67.78 0.97 -1.58 16 2 C -0.16 -2.33 9.52 25.65 0.24 -2.09 16 3 C -0.08 -1.42 4.95 29.85 0.15 -1.28 16 4 C -0.13 -2.25 4.03 29.85 0.12 -2.13 16 5 C 0.51 13.24 7.70 87.66 0.67 13.91 16 6 O -0.59 -19.82 15.39 -3.02 -0.05 -19.87 16 7 N -0.61 -15.49 2.97 -817.96 -2.43 -17.91 16 8 C 0.11 2.46 6.37 86.51 0.55 3.01 16 9 C -0.14 -4.41 5.67 30.82 0.17 -4.24 16 10 C 0.18 6.49 2.19 45.02 0.10 6.59 16 11 H 0.05 1.72 8.08 -2.39 -0.02 1.71 16 12 N -0.73 -35.09 4.33 -322.81 -1.40 -36.49 16 13 C -0.23 -12.01 9.93 84.03 0.83 -11.17 16 14 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 15 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 16 N -0.97 -58.79 13.06 21.65 0.28 -58.51 16 17 Si 0.97 45.23 29.55 68.60 2.03 47.25 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 20 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 21 C -0.09 -3.00 1.93 -10.70 -0.02 -3.02 16 22 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 23 C -0.11 -3.51 5.31 30.59 0.16 -3.35 16 24 C -0.15 -4.02 9.67 71.98 0.70 -3.33 16 25 C 0.12 3.46 5.32 86.38 0.46 3.92 16 26 H 0.09 1.27 7.84 -2.91 -0.02 1.24 16 27 H 0.11 1.14 8.06 -2.91 -0.02 1.12 16 28 H 0.12 1.47 8.06 -2.91 -0.02 1.44 16 29 H 0.06 1.28 7.75 -2.39 -0.02 1.26 16 30 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 31 H 0.12 1.51 7.93 -2.39 -0.02 1.50 16 32 H 0.11 1.64 7.70 -2.39 -0.02 1.62 16 33 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.11 1.73 5.93 -2.39 -0.01 1.71 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.37 19.68 7.51 -92.71 -0.70 18.98 16 38 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.05 1.88 7.22 -2.39 -0.02 1.86 16 41 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.59 6.70 -2.39 -0.02 1.57 16 44 H 0.08 2.48 5.72 -2.39 -0.01 2.46 16 45 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -66.51 356.91 4.27 -62.24 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.25 Total: 31.91 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 5.58 Total: -8.63 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -3.54 Total: -112.91 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.05 Total: -19.87 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -66.51 4.27 -62.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.507 kcal (2) G-P(sol) polarization free energy of solvation -66.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds