Wall clock time and date at job start Tue Mar 31 2020 03:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00190 * 2 1 4 4 C 1.53006 * 109.46906 * 125.00074 * 3 2 1 5 5 C 1.50699 * 109.46906 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00010 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99811 * 180.02562 * 5 4 3 8 8 C 1.46921 * 120.63177 * 0.02562 * 7 5 4 9 9 C 1.53191 * 108.77509 * 126.37087 * 8 7 5 10 10 C 1.53033 * 109.31515 * 54.63639 * 9 8 7 11 11 H 1.08999 * 109.45340 * 178.61944 * 10 9 8 12 12 N 1.46500 * 109.46114 * 58.65337 * 10 9 8 13 13 C 1.36943 * 119.99878 * 84.93157 * 12 10 9 14 14 H 1.07996 * 119.99698 * 0.02562 * 13 12 10 15 15 C 1.38809 * 119.99902 * 179.97438 * 13 12 10 16 16 N 1.31620 * 120.00319 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00011 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 59.99967 * 17 15 13 19 19 H 1.48503 * 109.47261 * 300.00148 * 17 15 13 20 20 H 1.48500 * 109.47454 * 180.02562 * 17 15 13 21 21 C 1.53037 * 109.53845 * 298.63636 * 10 9 8 22 22 H 1.09005 * 109.50172 * 301.41285 * 21 10 9 23 23 C 1.53005 * 109.50158 * 181.31472 * 21 10 9 24 24 C 1.53000 * 109.47204 * 174.99815 * 23 21 10 25 25 C 1.46928 * 120.63102 * 180.02562 * 7 5 4 26 26 H 1.07995 * 120.00332 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.99843 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99341 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46922 * 5.00537 * 3 2 1 30 30 H 1.08994 * 109.47011 * 245.00322 * 3 2 1 31 31 H 1.08996 * 109.46717 * 60.00062 * 4 3 2 32 32 H 1.08999 * 109.47058 * 300.00015 * 4 3 2 33 33 H 1.08995 * 109.59159 * 246.15654 * 8 7 5 34 34 H 1.09001 * 109.58701 * 6.44205 * 8 7 5 35 35 H 1.08998 * 109.49826 * 294.68455 * 9 8 7 36 36 H 1.09007 * 109.49928 * 174.58679 * 9 8 7 37 37 H 0.97000 * 120.00415 * 264.93105 * 12 10 9 38 38 H 0.97001 * 119.99542 * 359.97438 * 16 15 13 39 39 H 1.09003 * 109.46733 * 294.99961 * 23 21 10 40 40 H 1.08999 * 109.46978 * 54.99678 * 23 21 10 41 41 H 1.09004 * 109.46951 * 180.02562 * 24 23 21 42 42 H 1.09000 * 109.47428 * 300.00277 * 24 23 21 43 43 H 1.08998 * 109.46886 * 60.00422 * 24 23 21 44 44 H 1.08995 * 109.58740 * 113.84024 * 25 7 5 45 45 H 1.09003 * 109.58539 * 353.41621 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0352 1.3330 1.1817 5 6 3.7891 2.6378 1.1813 6 8 3.5706 3.4641 0.3210 7 7 4.7063 2.8863 2.1371 8 6 4.9825 1.8948 3.1855 9 6 6.4878 1.6118 3.2124 10 6 7.2477 2.9298 3.3780 11 1 8.3180 2.7287 3.4220 12 7 6.8230 3.5857 4.6172 13 6 7.4107 3.2475 5.8070 14 1 8.1875 2.4977 5.8316 15 6 7.0087 3.8693 6.9811 16 7 6.0623 4.7836 6.9510 17 14 7.8108 3.4086 8.6040 18 1 9.2680 3.6855 8.5322 19 1 7.5941 1.9639 8.8708 20 1 7.2077 4.2096 9.6994 21 6 6.9495 3.8455 2.1886 22 1 7.2424 3.3480 1.2640 23 6 7.7351 5.1498 2.3385 24 6 7.5349 6.0122 1.0907 25 6 5.4491 4.1539 2.1503 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3587 2.1316 0.0897 30 1 2.6213 1.4025 -0.9314 31 1 3.7400 0.5064 1.0920 32 1 2.4773 1.2354 2.1130 33 1 4.6672 2.2875 4.1521 34 1 4.4394 0.9745 2.9703 35 1 6.7852 1.1354 2.2782 36 1 6.7190 0.9512 4.0480 37 1 6.1255 4.2595 4.5950 38 1 5.6460 5.0231 6.1082 39 1 7.3778 5.6904 3.2150 40 1 8.7947 4.9240 2.4579 41 1 8.0950 6.9412 1.1973 42 1 7.8921 5.4715 0.2142 43 1 6.4752 6.2380 0.9714 44 1 5.1717 4.7307 3.0326 45 1 5.2158 4.7235 1.2507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716632824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:51 Heat of formation + Delta-G solvation = -22.992158 kcal Electronic energy + Delta-G solvation = -22988.197215 eV Core-core repulsion = 19812.677564 eV Total energy + Delta-G solvation = -3175.519651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.16518 -38.04489 -35.46972 -34.53820 -33.97494 -31.80565 -30.93178 -29.33636 -28.32762 -25.58737 -23.93633 -23.55914 -23.30823 -20.90326 -19.97686 -19.50578 -18.31740 -17.37509 -16.89960 -15.89426 -15.77672 -15.04861 -15.00894 -14.45646 -13.96538 -13.84547 -13.68766 -13.37296 -13.28653 -13.21262 -12.64008 -12.63087 -12.29499 -12.15717 -11.70342 -11.57204 -11.21920 -11.17609 -11.15593 -10.93179 -10.71970 -10.58759 -10.33703 -10.23520 -10.00330 -9.87516 -9.65746 -9.41814 -9.17581 -8.94283 -8.28187 -7.06130 -6.12256 -3.12685 2.08985 2.81208 3.25576 3.49389 3.52057 3.69866 4.54108 4.64439 4.79895 4.97743 5.02090 5.13705 5.16897 5.21801 5.27508 5.38325 5.44967 5.53760 5.60211 5.62426 5.68669 5.70463 5.73569 5.83665 5.84397 5.97623 6.04323 6.07402 6.11915 6.25666 6.30838 6.33686 6.44909 6.48358 6.56035 6.60354 6.60612 6.69488 6.82749 6.93692 7.67993 7.78466 8.36827 8.72366 9.19043 10.05548 10.21141 11.35327 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.004675 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.843603 B = 5987.552054 C = 7074.796463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.079 4.079 4 C -0.135 4.135 5 C 0.511 3.489 6 O -0.555 6.555 7 N -0.603 5.603 8 C 0.114 3.886 9 C -0.150 4.150 10 C 0.184 3.816 11 H 0.051 0.949 12 N -0.730 5.730 13 C -0.329 4.329 14 H 0.063 0.937 15 C -0.043 4.043 16 N -0.943 5.943 17 Si 1.077 2.923 18 H -0.296 1.296 19 H -0.296 1.296 20 H -0.286 1.286 21 C -0.104 4.104 22 H 0.067 0.933 23 C -0.109 4.109 24 C -0.153 4.153 25 C 0.119 3.881 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.367 0.633 38 H 0.254 0.746 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.054 -7.634 -12.471 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.171 4.171 3 C -0.116 4.116 4 C -0.174 4.174 5 C 0.300 3.700 6 O -0.434 6.434 7 N -0.335 5.335 8 C -0.009 4.009 9 C -0.191 4.191 10 C 0.074 3.926 11 H 0.069 0.931 12 N -0.373 5.373 13 C -0.460 4.460 14 H 0.081 0.919 15 C -0.241 4.241 16 N -0.588 5.588 17 Si 0.909 3.091 18 H -0.224 1.224 19 H -0.224 1.224 20 H -0.211 1.211 21 C -0.124 4.124 22 H 0.085 0.915 23 C -0.147 4.147 24 C -0.210 4.210 25 C -0.004 4.004 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.201 0.799 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.974 -7.034 -11.227 13.832 hybrid contribution -0.095 -0.361 -1.472 1.518 sum -4.069 -7.395 -12.699 15.248 Atomic orbital electron populations 1.23867 0.95986 1.01816 1.01560 1.23001 0.96100 0.98435 0.99541 1.20506 0.97812 0.95238 0.98065 1.21630 0.98860 0.96021 1.00935 1.20640 0.79734 0.88881 0.80777 1.90650 1.66471 1.48598 1.37723 1.48168 1.38748 1.18719 1.27889 1.21719 0.97146 0.90852 0.91160 1.22508 0.95035 1.00881 1.00646 1.20145 0.96589 0.89934 0.85935 0.93095 1.42478 1.45530 1.46960 1.02365 1.20014 1.18125 1.21107 0.86751 0.91863 1.25686 0.99623 0.97584 1.01200 1.70902 1.26941 1.32965 1.28018 0.83270 0.74890 0.75184 0.75799 1.22376 1.22372 1.21148 1.21778 0.94411 0.97205 0.99049 0.91464 1.21405 1.00061 0.95138 0.98100 1.21852 1.01520 0.99580 0.98090 1.21653 0.90838 0.85158 1.02703 0.88582 0.88545 0.87368 0.90801 0.90332 0.88937 0.88887 0.90136 0.90969 0.93233 0.90703 0.79876 0.93523 0.90933 0.91961 0.93082 0.93281 0.92787 0.91404 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 14.32 29.01 0.42 -1.30 16 2 C -0.15 -1.42 9.52 -36.03 -0.34 -1.77 16 3 C -0.08 -0.87 4.95 -27.88 -0.14 -1.01 16 4 C -0.13 -1.56 4.03 -27.88 -0.11 -1.67 16 5 C 0.51 7.96 7.70 -10.99 -0.08 7.87 16 6 O -0.56 -10.28 15.39 5.56 0.09 -10.19 16 7 N -0.60 -9.61 2.97 -172.75 -0.51 -10.12 16 8 C 0.11 1.76 6.08 -3.71 -0.02 1.74 16 9 C -0.15 -2.43 5.78 -26.62 -0.15 -2.59 16 10 C 0.18 3.42 2.53 -67.89 -0.17 3.25 16 11 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 12 N -0.73 -16.62 3.72 -53.39 -0.20 -16.82 16 13 C -0.33 -8.63 9.93 -15.06 -0.15 -8.78 16 14 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 15 C -0.04 -1.20 5.50 -17.43 -0.10 -1.29 16 16 N -0.94 -28.06 13.70 55.49 0.76 -27.30 16 17 Si 1.08 25.11 29.92 -169.99 -5.09 20.03 16 18 H -0.30 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.30 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 C -0.10 -1.70 2.14 -90.48 -0.19 -1.90 16 22 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 23 C -0.11 -1.75 5.19 -26.73 -0.14 -1.89 16 24 C -0.15 -2.09 9.68 37.16 0.36 -1.73 16 25 C 0.12 2.00 5.03 -3.69 -0.02 1.98 16 26 H 0.10 0.71 8.06 -52.49 -0.42 0.28 16 27 H 0.10 0.84 7.84 -52.49 -0.41 0.43 16 28 H 0.11 0.87 8.06 -52.49 -0.42 0.45 16 29 H 0.07 0.90 7.75 -51.93 -0.40 0.49 16 30 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 31 H 0.09 0.92 7.69 -51.93 -0.40 0.52 16 32 H 0.09 1.01 7.94 -51.93 -0.41 0.60 16 33 H 0.08 1.48 7.74 -51.93 -0.40 1.08 16 34 H 0.07 0.90 5.93 -51.93 -0.31 0.59 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.37 8.78 4.77 -40.82 -0.19 8.58 16 38 H 0.25 7.45 6.77 -40.82 -0.28 7.18 16 39 H 0.07 1.34 7.70 -51.93 -0.40 0.94 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.74 6.70 -51.93 -0.35 0.40 16 44 H 0.07 1.26 6.64 -51.93 -0.34 0.91 16 45 H 0.09 1.49 5.73 -51.93 -0.30 1.19 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -30.22 351.57 -8.13 -38.35 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -7.63 Total: 9.85 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -0.85 Total: -9.09 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.05 Total: -54.24 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.09 Total: 20.03 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.22 -8.13 -38.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.354 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds