Wall clock time and date at job start Tue Mar 31 2020 03:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00190 * 2 1 4 4 C 1.53006 * 109.46906 * 125.00074 * 3 2 1 5 5 C 1.50699 * 109.46906 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00010 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99811 * 180.02562 * 5 4 3 8 8 C 1.46921 * 120.63177 * 0.02562 * 7 5 4 9 9 C 1.53191 * 108.77509 * 126.37087 * 8 7 5 10 10 C 1.53033 * 109.31515 * 54.63639 * 9 8 7 11 11 H 1.08999 * 109.45340 * 178.61944 * 10 9 8 12 12 N 1.46500 * 109.46114 * 58.65337 * 10 9 8 13 13 C 1.36943 * 119.99878 * 84.93157 * 12 10 9 14 14 H 1.07996 * 119.99698 * 0.02562 * 13 12 10 15 15 C 1.38809 * 119.99902 * 179.97438 * 13 12 10 16 16 N 1.31620 * 120.00319 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00011 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 59.99967 * 17 15 13 19 19 H 1.48503 * 109.47261 * 300.00148 * 17 15 13 20 20 H 1.48500 * 109.47454 * 180.02562 * 17 15 13 21 21 C 1.53037 * 109.53845 * 298.63636 * 10 9 8 22 22 H 1.09005 * 109.50172 * 301.41285 * 21 10 9 23 23 C 1.53005 * 109.50158 * 181.31472 * 21 10 9 24 24 C 1.53000 * 109.47204 * 174.99815 * 23 21 10 25 25 C 1.46928 * 120.63102 * 180.02562 * 7 5 4 26 26 H 1.07995 * 120.00332 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.99843 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99341 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46922 * 5.00537 * 3 2 1 30 30 H 1.08994 * 109.47011 * 245.00322 * 3 2 1 31 31 H 1.08996 * 109.46717 * 60.00062 * 4 3 2 32 32 H 1.08999 * 109.47058 * 300.00015 * 4 3 2 33 33 H 1.08995 * 109.59159 * 246.15654 * 8 7 5 34 34 H 1.09001 * 109.58701 * 6.44205 * 8 7 5 35 35 H 1.08998 * 109.49826 * 294.68455 * 9 8 7 36 36 H 1.09007 * 109.49928 * 174.58679 * 9 8 7 37 37 H 0.97000 * 120.00415 * 264.93105 * 12 10 9 38 38 H 0.97001 * 119.99542 * 359.97438 * 16 15 13 39 39 H 1.09003 * 109.46733 * 294.99961 * 23 21 10 40 40 H 1.08999 * 109.46978 * 54.99678 * 23 21 10 41 41 H 1.09004 * 109.46951 * 180.02562 * 24 23 21 42 42 H 1.09000 * 109.47428 * 300.00277 * 24 23 21 43 43 H 1.08998 * 109.46886 * 60.00422 * 24 23 21 44 44 H 1.08995 * 109.58740 * 113.84024 * 25 7 5 45 45 H 1.09003 * 109.58539 * 353.41621 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0352 1.3330 1.1817 5 6 3.7891 2.6378 1.1813 6 8 3.5706 3.4641 0.3210 7 7 4.7063 2.8863 2.1371 8 6 4.9825 1.8948 3.1855 9 6 6.4878 1.6118 3.2124 10 6 7.2477 2.9298 3.3780 11 1 8.3180 2.7287 3.4220 12 7 6.8230 3.5857 4.6172 13 6 7.4107 3.2475 5.8070 14 1 8.1875 2.4977 5.8316 15 6 7.0087 3.8693 6.9811 16 7 6.0623 4.7836 6.9510 17 14 7.8108 3.4086 8.6040 18 1 9.2680 3.6855 8.5322 19 1 7.5941 1.9639 8.8708 20 1 7.2077 4.2096 9.6994 21 6 6.9495 3.8455 2.1886 22 1 7.2424 3.3480 1.2640 23 6 7.7351 5.1498 2.3385 24 6 7.5349 6.0122 1.0907 25 6 5.4491 4.1539 2.1503 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3587 2.1316 0.0897 30 1 2.6213 1.4025 -0.9314 31 1 3.7400 0.5064 1.0920 32 1 2.4773 1.2354 2.1130 33 1 4.6672 2.2875 4.1521 34 1 4.4394 0.9745 2.9703 35 1 6.7852 1.1354 2.2782 36 1 6.7190 0.9512 4.0480 37 1 6.1255 4.2595 4.5950 38 1 5.6460 5.0231 6.1082 39 1 7.3778 5.6904 3.2150 40 1 8.7947 4.9240 2.4579 41 1 8.0950 6.9412 1.1973 42 1 7.8921 5.4715 0.2142 43 1 6.4752 6.2380 0.9714 44 1 5.1717 4.7307 3.0326 45 1 5.2158 4.7235 1.2507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716632824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:50 Heat of formation + Delta-G solvation = -39.567668 kcal Electronic energy + Delta-G solvation = -22988.915984 eV Core-core repulsion = 19812.677564 eV Total energy + Delta-G solvation = -3176.238419 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47624 -39.42326 -36.34011 -36.08161 -35.50738 -33.46643 -31.85954 -30.86319 -29.78777 -26.84721 -25.50208 -25.17850 -24.50252 -22.26083 -20.88209 -20.65437 -19.80055 -19.18016 -18.16799 -17.08790 -17.05087 -16.62672 -16.09230 -15.81650 -15.50590 -15.25744 -14.95252 -14.84097 -14.54974 -14.46610 -13.98649 -13.66545 -13.53594 -13.31612 -13.08318 -12.86535 -12.67463 -12.57690 -12.22578 -12.19786 -11.98230 -11.91048 -11.88995 -11.67768 -11.64105 -11.43665 -11.05745 -10.92641 -10.74706 -10.21612 -9.65422 -9.01837 -8.29930 -5.23133 1.39183 1.58686 1.61021 1.69837 1.85677 2.01851 2.75468 3.45494 3.47890 3.71205 3.75282 3.92662 3.94643 3.99908 4.11006 4.19937 4.27063 4.29006 4.36549 4.40533 4.45110 4.52861 4.58517 4.65322 4.76402 4.82792 4.91279 4.91886 4.97210 5.06991 5.08873 5.14147 5.16140 5.20895 5.24652 5.31903 5.42563 5.59889 5.69769 5.75728 5.91444 6.42978 6.56459 7.12135 7.16832 8.08148 8.20706 9.21181 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.004675 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.843603 B = 5987.552054 C = 7074.796463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C -0.075 4.075 4 C -0.127 4.127 5 C 0.507 3.493 6 O -0.588 6.588 7 N -0.605 5.605 8 C 0.120 3.880 9 C -0.142 4.142 10 C 0.177 3.823 11 H 0.043 0.957 12 N -0.736 5.736 13 C -0.316 4.316 14 H 0.066 0.934 15 C -0.104 4.104 16 N -0.979 5.979 17 Si 1.122 2.878 18 H -0.282 1.282 19 H -0.278 1.278 20 H -0.300 1.300 21 C -0.092 4.092 22 H 0.086 0.914 23 C -0.105 4.105 24 C -0.145 4.145 25 C 0.124 3.876 26 H 0.113 0.887 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.046 0.954 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.358 0.642 38 H 0.241 0.759 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.041 0.959 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.711 -10.044 -13.623 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.176 4.176 3 C -0.113 4.113 4 C -0.167 4.167 5 C 0.298 3.702 6 O -0.469 6.469 7 N -0.336 5.336 8 C -0.002 4.002 9 C -0.182 4.182 10 C 0.068 3.932 11 H 0.061 0.939 12 N -0.379 5.379 13 C -0.448 4.448 14 H 0.084 0.916 15 C -0.295 4.295 16 N -0.628 5.628 17 Si 0.949 3.051 18 H -0.209 1.209 19 H -0.204 1.204 20 H -0.226 1.226 21 C -0.112 4.112 22 H 0.104 0.896 23 C -0.143 4.143 24 C -0.203 4.203 25 C 0.001 3.999 26 H 0.131 0.869 27 H 0.109 0.891 28 H 0.145 0.855 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.138 0.862 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.129 0.871 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.192 0.808 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.612 -9.489 -12.424 16.046 hybrid contribution -0.199 0.396 -1.207 1.286 sum -3.811 -9.093 -13.631 16.823 Atomic orbital electron populations 1.24046 0.96058 1.02473 1.00603 1.23002 0.96214 0.98051 1.00327 1.20436 0.97435 0.95880 0.97521 1.21684 0.99083 0.94226 1.01688 1.21393 0.79134 0.89912 0.79790 1.90636 1.67246 1.50058 1.38985 1.48230 1.38909 1.18301 1.28190 1.21674 0.97086 0.91929 0.89539 1.22379 0.95067 0.99022 1.01782 1.20385 0.96387 0.91386 0.85040 0.93902 1.42588 1.45175 1.47155 1.03004 1.20321 1.16987 1.19649 0.87844 0.91581 1.26926 1.00132 0.97831 1.04610 1.71008 1.29080 1.35302 1.27361 0.82668 0.74660 0.75637 0.72142 1.20885 1.20372 1.22618 1.21674 0.93956 0.96914 0.98651 0.89566 1.21338 0.99685 0.95235 0.98077 1.21781 1.01503 0.99747 0.97241 1.21470 0.91382 0.85774 1.01279 0.86861 0.89073 0.85481 0.92568 0.91145 0.86188 0.87690 0.93567 0.87052 0.90254 0.91568 0.80828 0.94889 0.94188 0.92028 0.92077 0.91660 0.93240 0.94061 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.98 14.32 67.78 0.97 -2.01 16 2 C -0.16 -2.52 9.52 25.64 0.24 -2.28 16 3 C -0.07 -1.54 4.95 29.85 0.15 -1.39 16 4 C -0.13 -2.61 4.03 29.85 0.12 -2.49 16 5 C 0.51 15.07 7.70 87.66 0.67 15.74 16 6 O -0.59 -21.47 15.39 -3.02 -0.05 -21.52 16 7 N -0.60 -18.63 2.97 -818.87 -2.43 -21.07 16 8 C 0.12 3.51 6.08 86.36 0.53 4.04 16 9 C -0.14 -4.32 5.78 30.67 0.18 -4.14 16 10 C 0.18 6.44 2.53 45.01 0.11 6.56 16 11 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 12 N -0.74 -34.16 3.72 -322.83 -1.20 -35.36 16 13 C -0.32 -16.70 9.93 84.03 0.83 -15.87 16 14 H 0.07 3.40 7.83 -2.91 -0.02 3.38 16 15 C -0.10 -5.82 5.50 84.86 0.47 -5.35 16 16 N -0.98 -60.04 13.70 21.65 0.30 -59.75 16 17 Si 1.12 50.84 29.92 68.60 2.05 52.89 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 20 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 21 C -0.09 -2.94 2.14 -10.70 -0.02 -2.96 16 22 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 23 C -0.11 -3.38 5.19 30.60 0.16 -3.22 16 24 C -0.15 -3.84 9.68 71.98 0.70 -3.15 16 25 C 0.12 4.21 5.03 86.37 0.43 4.64 16 26 H 0.11 1.34 8.06 -2.91 -0.02 1.32 16 27 H 0.09 1.47 7.84 -2.91 -0.02 1.44 16 28 H 0.13 1.57 8.06 -2.91 -0.02 1.54 16 29 H 0.06 1.33 7.75 -2.39 -0.02 1.31 16 30 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.12 1.85 7.69 -2.39 -0.02 1.83 16 32 H 0.10 1.96 7.94 -2.39 -0.02 1.94 16 33 H 0.05 1.70 7.74 -2.39 -0.02 1.68 16 34 H 0.11 2.39 5.93 -2.39 -0.01 2.37 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.36 17.93 4.77 -92.71 -0.44 17.49 16 38 H 0.24 14.83 6.77 -92.71 -0.63 14.20 16 39 H 0.04 1.54 7.70 -2.39 -0.02 1.52 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.05 1.35 6.70 -2.39 -0.02 1.33 16 44 H 0.04 1.62 6.64 -2.39 -0.02 1.60 16 45 H 0.08 2.92 5.73 -2.39 -0.01 2.91 16 Total: -1.00 -66.69 351.57 4.86 -61.83 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: 0.65 Total: 34.85 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 5.54 Total: -11.87 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -3.34 Total: -116.17 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.05 Total: 52.89 kcal Total: -66.69 4.86 -61.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.258 kcal (2) G-P(sol) polarization free energy of solvation -66.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds