Wall clock time and date at job start Tue Mar 31 2020 03:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99770 * 2 1 4 4 C 1.53006 * 109.47122 * 125.00150 * 3 2 1 5 5 C 1.50691 * 109.47454 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99682 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00401 * 180.02562 * 5 4 3 8 8 C 1.46926 * 120.62904 * 359.97438 * 7 5 4 9 9 C 1.53192 * 108.77820 * 233.58715 * 8 7 5 10 10 C 1.53033 * 109.31270 * 305.36633 * 9 8 7 11 11 H 1.09004 * 109.45285 * 181.37911 * 10 9 8 12 12 N 1.46502 * 109.46177 * 301.34300 * 10 9 8 13 13 C 1.36934 * 119.99932 * 275.07154 * 12 10 9 14 14 H 1.08006 * 120.00240 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00092 * 179.97438 * 13 12 10 16 16 N 1.31612 * 120.00084 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00127 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47393 * 89.99693 * 17 15 13 19 19 H 1.48498 * 109.47245 * 210.00016 * 17 15 13 20 20 H 1.48501 * 109.46908 * 330.00078 * 17 15 13 21 21 C 1.53041 * 109.53898 * 61.36218 * 10 9 8 22 22 H 1.08994 * 109.52286 * 58.60459 * 21 10 9 23 23 C 1.53004 * 109.49660 * 178.68381 * 21 10 9 24 24 C 1.53000 * 109.46857 * 184.83955 * 23 21 10 25 25 C 1.46927 * 120.63516 * 179.97438 * 7 5 4 26 26 H 1.08003 * 120.00270 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.99905 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99761 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47598 * 4.99829 * 3 2 1 30 30 H 1.08997 * 109.47193 * 244.99443 * 3 2 1 31 31 H 1.09004 * 109.46769 * 59.99429 * 4 3 2 32 32 H 1.09003 * 109.46769 * 300.00070 * 4 3 2 33 33 H 1.09006 * 109.58406 * 353.37631 * 8 7 5 34 34 H 1.09002 * 109.59019 * 113.79619 * 8 7 5 35 35 H 1.09000 * 109.49511 * 65.31256 * 9 8 7 36 36 H 1.08995 * 109.49883 * 185.40976 * 9 8 7 37 37 H 0.96994 * 120.00060 * 95.06337 * 12 10 9 38 38 H 0.97004 * 120.00333 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.47193 * 304.84010 * 23 21 10 40 40 H 1.09001 * 109.46834 * 64.84162 * 23 21 10 41 41 H 1.09005 * 109.46973 * 299.99475 * 24 23 21 42 42 H 1.08998 * 109.47789 * 59.99959 * 24 23 21 43 43 H 1.09000 * 109.46921 * 180.02562 * 24 23 21 44 44 H 1.08997 * 109.58859 * 246.20187 * 25 7 5 45 45 H 1.09001 * 109.58530 * 6.48424 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7880 2.6384 1.1821 6 8 3.5695 3.4648 0.3217 7 7 4.7050 2.8871 2.1379 8 6 4.9812 1.8956 3.1865 9 6 4.8310 2.5694 4.5541 10 6 5.7274 3.8085 4.6090 11 1 5.6409 4.2759 5.5899 12 7 7.1193 3.4147 4.3771 13 6 7.8883 2.9718 5.4200 14 1 7.4689 2.9132 6.4135 15 6 9.2070 2.5981 5.2002 16 7 9.7180 2.6691 3.9894 17 14 10.2563 1.9946 6.6230 18 1 10.1202 0.5212 6.7483 19 1 11.6782 2.3408 6.3710 20 1 9.8046 2.6422 7.8807 21 6 5.2925 4.8030 3.5302 22 1 4.2496 5.0781 3.6874 23 6 6.1681 6.0554 3.6073 24 6 5.6566 7.0974 2.6105 25 6 5.4476 4.1548 2.1513 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6213 1.4026 -0.9313 31 1 3.7399 0.5065 1.0921 32 1 2.4772 1.2355 2.1130 33 1 4.2727 1.0712 3.1054 34 1 5.9978 1.5187 3.0745 35 1 3.7923 2.8649 4.7018 36 1 5.1262 1.8717 5.3377 37 1 7.4961 3.4676 3.4849 38 1 10.6397 2.4083 3.8359 39 1 6.1264 6.4663 4.6160 40 1 7.1979 5.7942 3.3636 41 1 5.6984 6.6864 1.6018 42 1 4.6268 7.3586 2.8541 43 1 6.2807 7.9894 2.6652 44 1 6.5023 3.9626 1.9547 45 1 5.0486 4.8201 1.3856 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716632825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:55 Heat of formation + Delta-G solvation = -23.670284 kcal Electronic energy + Delta-G solvation = -22937.790786 eV Core-core repulsion = 19762.241729 eV Total energy + Delta-G solvation = -3175.549057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.07270 -37.93979 -35.42758 -34.40334 -33.74517 -31.69109 -30.87978 -29.39594 -28.43152 -25.57788 -23.98299 -23.54407 -23.24348 -20.78110 -19.93764 -19.39159 -18.11543 -17.38185 -16.75527 -15.85350 -15.66309 -14.99505 -14.61154 -14.42505 -14.00104 -13.82436 -13.68999 -13.29787 -13.26084 -12.84961 -12.67672 -12.39744 -12.26790 -12.12578 -11.65632 -11.38096 -11.15201 -11.11461 -11.05804 -10.97005 -10.80369 -10.70767 -10.29579 -10.25024 -10.17407 -9.78733 -9.60152 -9.55346 -9.36676 -8.93229 -8.18551 -6.98873 -5.80440 -3.08860 2.11493 2.88811 3.34422 3.40089 3.46234 3.47549 4.56052 4.59839 4.84399 5.05327 5.06584 5.19781 5.21337 5.31599 5.35705 5.46013 5.55335 5.57993 5.61971 5.70838 5.70951 5.81671 5.84574 5.88542 5.93758 6.08564 6.11092 6.16638 6.21249 6.36679 6.40125 6.42027 6.47714 6.57592 6.62295 6.65664 6.71702 6.78273 6.95028 7.03065 7.67107 7.77183 8.38024 8.44859 9.49737 10.06645 10.41817 11.41918 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.004597 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.192923 B = 6089.574049 C = 7103.370362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.079 4.079 4 C -0.135 4.135 5 C 0.511 3.489 6 O -0.557 6.557 7 N -0.602 5.602 8 C 0.113 3.887 9 C -0.150 4.150 10 C 0.178 3.822 11 H 0.050 0.950 12 N -0.719 5.719 13 C -0.238 4.238 14 H 0.069 0.931 15 C -0.011 4.011 16 N -0.932 5.932 17 Si 0.904 3.096 18 H -0.291 1.291 19 H -0.293 1.293 20 H -0.283 1.283 21 C -0.103 4.103 22 H 0.065 0.935 23 C -0.110 4.110 24 C -0.153 4.153 25 C 0.118 3.882 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.370 -1.424 -4.171 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.117 4.117 4 C -0.174 4.174 5 C 0.299 3.701 6 O -0.436 6.436 7 N -0.334 5.334 8 C -0.010 4.010 9 C -0.191 4.191 10 C 0.068 3.932 11 H 0.068 0.932 12 N -0.361 5.361 13 C -0.369 4.369 14 H 0.087 0.913 15 C -0.207 4.207 16 N -0.580 5.580 17 Si 0.735 3.265 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.209 1.209 21 C -0.123 4.123 22 H 0.083 0.917 23 C -0.148 4.148 24 C -0.210 4.210 25 C -0.004 4.004 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.375 -1.028 -4.454 15.084 hybrid contribution 0.851 -0.555 0.683 1.224 sum -13.524 -1.582 -3.771 14.129 Atomic orbital electron populations 1.23851 0.95980 1.01740 1.01865 1.23021 0.96087 0.98528 0.99265 1.20509 0.97797 0.95118 0.98227 1.21627 0.98902 0.96224 1.00694 1.20615 0.79571 0.88852 0.81055 1.90649 1.66610 1.48618 1.37745 1.48160 1.38823 1.18682 1.27696 1.21742 1.02305 0.89964 0.86952 1.22522 0.99196 1.01043 0.96360 1.20219 0.85978 0.91213 0.95803 0.93184 1.42477 1.06307 1.78006 1.09310 1.19218 0.92711 1.35477 0.89478 0.91275 1.24697 0.97202 1.02448 0.96384 1.69646 1.14670 1.54347 1.19370 0.86244 0.80008 0.78506 0.81725 1.21842 1.21900 1.20861 1.21732 0.99229 0.95846 0.95451 0.91673 1.21417 1.00477 0.93802 0.99105 1.21852 1.00394 0.98946 0.99844 1.21661 0.96462 0.84544 0.97766 0.88601 0.88632 0.87330 0.90872 0.90263 0.88870 0.89001 0.91152 0.89732 0.93354 0.90769 0.78089 0.93535 0.92070 0.90503 0.92788 0.93407 0.93177 0.90885 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 14.32 29.01 0.42 -1.30 16 2 C -0.15 -1.42 9.52 -36.03 -0.34 -1.76 16 3 C -0.08 -0.89 4.95 -27.88 -0.14 -1.02 16 4 C -0.13 -1.57 4.03 -27.88 -0.11 -1.69 16 5 C 0.51 8.02 7.70 -10.99 -0.08 7.93 16 6 O -0.56 -10.39 15.39 5.55 0.09 -10.31 16 7 N -0.60 -9.66 2.97 -172.79 -0.51 -10.17 16 8 C 0.11 1.74 6.08 -3.71 -0.02 1.72 16 9 C -0.15 -2.42 5.78 -26.61 -0.15 -2.57 16 10 C 0.18 3.27 2.53 -67.89 -0.17 3.10 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 12 N -0.72 -16.30 3.72 -53.38 -0.20 -16.50 16 13 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 14 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 16 N -0.93 -26.86 13.06 55.49 0.72 -26.13 16 17 Si 0.90 21.60 29.55 -169.99 -5.02 16.57 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.10 -1.68 2.14 -90.52 -0.19 -1.87 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 23 C -0.11 -1.77 5.19 -26.73 -0.14 -1.91 16 24 C -0.15 -2.11 9.67 37.16 0.36 -1.75 16 25 C 0.12 2.01 5.02 -3.73 -0.02 1.99 16 26 H 0.10 0.81 7.84 -52.48 -0.41 0.40 16 27 H 0.10 0.70 8.06 -52.48 -0.42 0.27 16 28 H 0.11 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.07 0.88 7.75 -51.93 -0.40 0.47 16 30 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.09 0.98 7.94 -51.93 -0.41 0.57 16 32 H 0.09 0.96 7.69 -51.93 -0.40 0.56 16 33 H 0.07 0.88 5.93 -51.93 -0.31 0.57 16 34 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.38 9.39 5.94 -40.82 -0.24 9.14 16 38 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 41 H 0.05 0.75 6.70 -51.93 -0.35 0.41 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.39 6.64 -51.93 -0.34 1.04 16 45 H 0.09 1.47 5.73 -51.93 -0.30 1.18 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -29.12 353.25 -8.19 -37.31 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -7.74 Total: 9.70 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.85 Total: -5.80 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.01 Total: -52.80 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.12 -8.19 -37.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.637 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds