Wall clock time and date at job start Tue Mar 31 2020 03:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99770 * 2 1 4 4 C 1.53006 * 109.47122 * 125.00150 * 3 2 1 5 5 C 1.50691 * 109.47454 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99682 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00401 * 180.02562 * 5 4 3 8 8 C 1.46926 * 120.62904 * 359.97438 * 7 5 4 9 9 C 1.53192 * 108.77820 * 233.58715 * 8 7 5 10 10 C 1.53033 * 109.31270 * 305.36633 * 9 8 7 11 11 H 1.09004 * 109.45285 * 181.37911 * 10 9 8 12 12 N 1.46502 * 109.46177 * 301.34300 * 10 9 8 13 13 C 1.36934 * 119.99932 * 275.07154 * 12 10 9 14 14 H 1.08006 * 120.00240 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00092 * 179.97438 * 13 12 10 16 16 N 1.31612 * 120.00084 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00127 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47393 * 89.99693 * 17 15 13 19 19 H 1.48498 * 109.47245 * 210.00016 * 17 15 13 20 20 H 1.48501 * 109.46908 * 330.00078 * 17 15 13 21 21 C 1.53041 * 109.53898 * 61.36218 * 10 9 8 22 22 H 1.08994 * 109.52286 * 58.60459 * 21 10 9 23 23 C 1.53004 * 109.49660 * 178.68381 * 21 10 9 24 24 C 1.53000 * 109.46857 * 184.83955 * 23 21 10 25 25 C 1.46927 * 120.63516 * 179.97438 * 7 5 4 26 26 H 1.08003 * 120.00270 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.99905 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99761 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47598 * 4.99829 * 3 2 1 30 30 H 1.08997 * 109.47193 * 244.99443 * 3 2 1 31 31 H 1.09004 * 109.46769 * 59.99429 * 4 3 2 32 32 H 1.09003 * 109.46769 * 300.00070 * 4 3 2 33 33 H 1.09006 * 109.58406 * 353.37631 * 8 7 5 34 34 H 1.09002 * 109.59019 * 113.79619 * 8 7 5 35 35 H 1.09000 * 109.49511 * 65.31256 * 9 8 7 36 36 H 1.08995 * 109.49883 * 185.40976 * 9 8 7 37 37 H 0.96994 * 120.00060 * 95.06337 * 12 10 9 38 38 H 0.97004 * 120.00333 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.47193 * 304.84010 * 23 21 10 40 40 H 1.09001 * 109.46834 * 64.84162 * 23 21 10 41 41 H 1.09005 * 109.46973 * 299.99475 * 24 23 21 42 42 H 1.08998 * 109.47789 * 59.99959 * 24 23 21 43 43 H 1.09000 * 109.46921 * 180.02562 * 24 23 21 44 44 H 1.08997 * 109.58859 * 246.20187 * 25 7 5 45 45 H 1.09001 * 109.58530 * 6.48424 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7880 2.6384 1.1821 6 8 3.5695 3.4648 0.3217 7 7 4.7050 2.8871 2.1379 8 6 4.9812 1.8956 3.1865 9 6 4.8310 2.5694 4.5541 10 6 5.7274 3.8085 4.6090 11 1 5.6409 4.2759 5.5899 12 7 7.1193 3.4147 4.3771 13 6 7.8883 2.9718 5.4200 14 1 7.4689 2.9132 6.4135 15 6 9.2070 2.5981 5.2002 16 7 9.7180 2.6691 3.9894 17 14 10.2563 1.9946 6.6230 18 1 10.1202 0.5212 6.7483 19 1 11.6782 2.3408 6.3710 20 1 9.8046 2.6422 7.8807 21 6 5.2925 4.8030 3.5302 22 1 4.2496 5.0781 3.6874 23 6 6.1681 6.0554 3.6073 24 6 5.6566 7.0974 2.6105 25 6 5.4476 4.1548 2.1513 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6213 1.4026 -0.9313 31 1 3.7399 0.5065 1.0921 32 1 2.4772 1.2355 2.1130 33 1 4.2727 1.0712 3.1054 34 1 5.9978 1.5187 3.0745 35 1 3.7923 2.8649 4.7018 36 1 5.1262 1.8717 5.3377 37 1 7.4961 3.4676 3.4849 38 1 10.6397 2.4083 3.8359 39 1 6.1264 6.4663 4.6160 40 1 7.1979 5.7942 3.3636 41 1 5.6984 6.6864 1.6018 42 1 4.6268 7.3586 2.8541 43 1 6.2807 7.9894 2.6652 44 1 6.5023 3.9626 1.9547 45 1 5.0486 4.8201 1.3856 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716632825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:54 Heat of formation + Delta-G solvation = -39.326404 kcal Electronic energy + Delta-G solvation = -22938.469686 eV Core-core repulsion = 19762.241729 eV Total energy + Delta-G solvation = -3176.227957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38315 -39.31015 -36.28618 -35.85944 -35.33258 -33.38560 -31.80847 -30.97673 -29.81777 -26.86267 -25.57805 -25.03970 -24.42446 -22.13227 -20.75261 -20.61104 -19.54697 -19.21249 -18.02840 -17.00188 -16.88878 -16.49267 -15.93112 -15.80605 -15.53577 -15.11703 -14.91276 -14.76519 -14.49383 -14.10138 -14.05345 -13.67265 -13.43222 -13.16916 -13.03179 -12.84272 -12.74748 -12.63491 -12.35064 -12.13874 -12.06126 -11.97032 -11.87837 -11.81685 -11.57171 -11.44502 -11.11094 -10.89620 -10.69954 -10.18534 -9.55973 -8.90493 -7.87350 -5.13463 1.42222 1.50385 1.51129 1.58760 1.65503 2.10368 2.60903 3.46384 3.53453 3.82428 3.87650 3.99268 4.06475 4.10651 4.19970 4.23767 4.36734 4.38747 4.45683 4.48717 4.49907 4.62133 4.66181 4.74202 4.86822 4.90853 4.94792 5.02575 5.06031 5.10801 5.17796 5.22380 5.23756 5.28758 5.33838 5.41162 5.52468 5.62048 5.69263 5.78953 5.93925 6.34310 6.51626 7.19382 7.41926 8.18499 8.42019 9.35939 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.004597 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.192923 B = 6089.574049 C = 7103.370362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C -0.075 4.075 4 C -0.127 4.127 5 C 0.506 3.494 6 O -0.590 6.590 7 N -0.604 5.604 8 C 0.118 3.882 9 C -0.143 4.143 10 C 0.171 3.829 11 H 0.046 0.954 12 N -0.725 5.725 13 C -0.226 4.226 14 H 0.075 0.925 15 C -0.073 4.073 16 N -0.969 5.969 17 Si 0.963 3.037 18 H -0.290 1.290 19 H -0.304 1.304 20 H -0.272 1.272 21 C -0.091 4.091 22 H 0.084 0.916 23 C -0.106 4.106 24 C -0.146 4.146 25 C 0.124 3.876 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.373 0.627 38 H 0.247 0.753 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.740 -2.249 -3.235 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.178 4.178 3 C -0.112 4.112 4 C -0.167 4.167 5 C 0.297 3.703 6 O -0.472 6.472 7 N -0.335 5.335 8 C -0.004 4.004 9 C -0.183 4.183 10 C 0.062 3.938 11 H 0.064 0.936 12 N -0.366 5.366 13 C -0.358 4.358 14 H 0.093 0.907 15 C -0.265 4.265 16 N -0.621 5.621 17 Si 0.794 3.206 18 H -0.217 1.217 19 H -0.231 1.231 20 H -0.197 1.197 21 C -0.111 4.111 22 H 0.102 0.898 23 C -0.144 4.144 24 C -0.203 4.203 25 C 0.001 3.999 26 H 0.113 0.887 27 H 0.130 0.870 28 H 0.140 0.860 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.206 0.794 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.799 -1.855 -3.483 17.256 hybrid contribution 1.492 -0.242 0.371 1.557 sum -15.306 -2.097 -3.112 15.760 Atomic orbital electron populations 1.24038 0.95861 1.02552 1.00372 1.22982 0.96307 0.97957 1.00549 1.20430 0.97457 0.95990 0.97372 1.21678 0.98996 0.94003 1.01995 1.21371 0.79141 0.89845 0.79961 1.90634 1.67602 1.50095 1.38840 1.48230 1.38799 1.18313 1.28158 1.21704 1.01553 0.90730 0.86385 1.22397 0.99987 0.99443 0.96501 1.20459 0.84284 0.92810 0.96217 0.93592 1.42589 1.07991 1.77887 1.08106 1.19572 0.92820 1.33101 0.90294 0.90661 1.25373 0.98661 1.04146 0.98311 1.69805 1.14407 1.56618 1.21237 0.85285 0.77812 0.77923 0.79602 1.21695 1.23093 1.19706 1.21636 1.00022 0.95231 0.94195 0.89808 1.21345 0.98677 0.94544 0.99839 1.21782 1.01394 0.98444 0.98678 1.21460 0.95001 0.85383 0.98073 0.88720 0.86953 0.85967 0.91979 0.91784 0.87226 0.86724 0.87287 0.93097 0.90511 0.91337 0.79381 0.94441 0.91927 0.93821 0.93352 0.91809 0.92164 0.93753 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 14.32 67.78 0.97 -1.83 16 2 C -0.16 -2.59 9.52 25.65 0.24 -2.35 16 3 C -0.07 -1.55 4.95 29.85 0.15 -1.40 16 4 C -0.13 -2.64 4.03 29.85 0.12 -2.52 16 5 C 0.51 15.21 7.70 87.65 0.67 15.88 16 6 O -0.59 -21.79 15.39 -3.05 -0.05 -21.84 16 7 N -0.60 -18.75 2.97 -818.98 -2.43 -21.19 16 8 C 0.12 3.46 6.08 86.36 0.53 3.98 16 9 C -0.14 -4.28 5.78 30.67 0.18 -4.10 16 10 C 0.17 6.13 2.53 45.02 0.11 6.25 16 11 H 0.05 1.70 8.08 -2.38 -0.02 1.68 16 12 N -0.72 -33.31 3.72 -322.81 -1.20 -34.51 16 13 C -0.23 -11.67 9.93 84.03 0.83 -10.83 16 14 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 15 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 16 N -0.97 -57.54 13.06 21.65 0.28 -57.26 16 17 Si 0.96 44.86 29.55 68.60 2.03 46.89 16 18 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 19 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 C -0.09 -2.90 2.14 -10.73 -0.02 -2.92 16 22 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 23 C -0.11 -3.40 5.19 30.60 0.16 -3.24 16 24 C -0.15 -3.88 9.67 71.98 0.70 -3.19 16 25 C 0.12 4.25 5.02 86.35 0.43 4.68 16 26 H 0.09 1.39 7.84 -2.91 -0.02 1.37 16 27 H 0.11 1.27 8.06 -2.91 -0.02 1.25 16 28 H 0.12 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.06 1.41 7.75 -2.39 -0.02 1.39 16 30 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 31 H 0.11 1.97 7.94 -2.38 -0.02 1.95 16 32 H 0.11 1.91 7.69 -2.39 -0.02 1.89 16 33 H 0.11 2.34 5.93 -2.38 -0.01 2.32 16 34 H 0.05 1.86 7.74 -2.39 -0.02 1.84 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.37 18.92 5.94 -92.71 -0.55 18.37 16 38 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.04 1.69 7.69 -2.39 -0.02 1.67 16 41 H 0.05 1.34 6.70 -2.38 -0.02 1.32 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.04 1.77 6.64 -2.39 -0.02 1.76 16 45 H 0.08 2.87 5.73 -2.39 -0.01 2.85 16 Total: -1.00 -63.88 353.25 4.57 -59.31 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.40 Total: 33.71 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 5.54 Total: -5.12 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -3.35 Total: -112.95 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.05 Total: -21.84 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -63.88 4.57 -59.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.987 kcal (2) G-P(sol) polarization free energy of solvation -63.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds