Wall clock time and date at job start Tue Mar 31 2020 03:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 119.99927 * 2 1 4 4 C 1.53006 * 109.47193 * 125.00504 * 3 2 1 5 5 C 1.50698 * 109.47261 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00077 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99826 * 180.02562 * 5 4 3 8 8 C 1.46923 * 120.63212 * 0.02562 * 7 5 4 9 9 C 1.53194 * 108.77647 * 233.59136 * 8 7 5 10 10 C 1.53043 * 109.33394 * 305.37893 * 9 8 7 11 11 H 1.08997 * 109.43276 * 301.31227 * 10 9 8 12 12 N 1.46504 * 109.48409 * 181.35635 * 10 9 8 13 13 C 1.36936 * 120.00146 * 84.91354 * 12 10 9 14 14 H 1.07996 * 119.99809 * 0.02562 * 13 12 10 15 15 C 1.38810 * 119.99872 * 180.02562 * 13 12 10 16 16 N 1.31622 * 120.00307 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99887 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47012 * 59.99912 * 17 15 13 19 19 H 1.48501 * 109.47382 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47278 * 299.99813 * 17 15 13 21 21 C 1.53043 * 109.54078 * 61.32181 * 10 9 8 22 22 H 1.08998 * 109.49998 * 58.64627 * 21 10 9 23 23 C 1.52999 * 109.49536 * 178.71597 * 21 10 9 24 24 C 1.53006 * 109.46626 * 184.93296 * 23 21 10 25 25 C 1.46925 * 120.62812 * 180.02562 * 7 5 4 26 26 H 1.07998 * 120.00264 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99989 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00264 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47024 * 5.00996 * 3 2 1 30 30 H 1.08999 * 109.47859 * 245.00620 * 3 2 1 31 31 H 1.08996 * 109.46969 * 60.00026 * 4 3 2 32 32 H 1.09003 * 109.46446 * 300.00115 * 4 3 2 33 33 H 1.09001 * 109.58317 * 353.37158 * 8 7 5 34 34 H 1.08994 * 109.58438 * 113.79746 * 8 7 5 35 35 H 1.08998 * 109.50126 * 65.31040 * 9 8 7 36 36 H 1.09002 * 109.49717 * 185.38608 * 9 8 7 37 37 H 0.97003 * 119.99543 * 264.91739 * 12 10 9 38 38 H 0.96997 * 120.00298 * 179.97438 * 16 15 13 39 39 H 1.08993 * 109.47839 * 64.93365 * 23 21 10 40 40 H 1.09000 * 109.47160 * 304.92927 * 23 21 10 41 41 H 1.09000 * 109.47050 * 299.99699 * 24 23 21 42 42 H 1.09001 * 109.46801 * 59.99811 * 24 23 21 43 43 H 1.09001 * 109.46998 * 179.97438 * 24 23 21 44 44 H 1.09003 * 109.58946 * 6.62043 * 25 7 5 45 45 H 1.09000 * 109.58295 * 246.19794 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7881 2.6384 1.1820 6 8 3.5696 3.4648 0.3216 7 7 4.7052 2.8870 2.1378 8 6 4.9822 1.8951 3.1857 9 6 4.8318 2.5678 4.5537 10 6 5.7270 3.8079 4.6097 11 1 6.7628 3.5155 4.4374 12 7 5.6103 4.4357 5.9283 13 6 6.3816 3.9914 6.9688 14 1 7.0763 3.1785 6.8174 15 6 6.2706 4.5859 8.2182 16 7 5.4244 5.5770 8.4027 17 14 7.3233 3.9803 9.6376 18 1 8.7588 4.1378 9.2915 19 1 7.0180 4.7747 10.8546 20 1 7.0305 2.5474 9.8949 21 6 5.2917 4.8026 3.5311 22 1 4.2486 5.0768 3.6887 23 6 6.1666 6.0553 3.6088 24 6 5.6533 7.0983 2.6139 25 6 5.4470 4.1552 2.1517 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0897 30 1 2.6212 1.4028 -0.9314 31 1 3.7400 0.5066 1.0919 32 1 2.4772 1.2355 2.1130 33 1 4.2741 1.0703 3.1043 34 1 5.9990 1.5190 3.0731 35 1 3.7930 2.8627 4.7019 36 1 5.1272 1.8697 5.3369 37 1 4.9865 5.1660 6.0641 38 1 5.3465 5.9922 9.2758 39 1 7.1963 5.7953 3.3637 40 1 6.1258 6.4650 4.6181 41 1 5.6942 6.6886 1.6047 42 1 4.6236 7.3583 2.8591 43 1 6.2763 7.9910 2.6696 44 1 5.0458 4.8217 1.3882 45 1 6.5018 3.9637 1.9548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716632826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:58 Heat of formation + Delta-G solvation = -25.607624 kcal Electronic energy + Delta-G solvation = -22578.578880 eV Core-core repulsion = 19402.945814 eV Total energy + Delta-G solvation = -3175.633066 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.17154 -37.91958 -35.51330 -34.71917 -33.78501 -31.72521 -30.98853 -29.49479 -28.59904 -25.57693 -24.12836 -23.58495 -22.57764 -20.81715 -20.01652 -19.76089 -18.77292 -17.15561 -16.94015 -15.96090 -15.81428 -14.99935 -14.94151 -14.25622 -13.99428 -13.77740 -13.71645 -13.35762 -13.28021 -12.96491 -12.82884 -12.50967 -12.26076 -12.08718 -11.70794 -11.59964 -11.29780 -11.21839 -11.18028 -10.93151 -10.86299 -10.69392 -10.34535 -10.24273 -10.15781 -9.79697 -9.68103 -9.59908 -9.46849 -8.90967 -8.44339 -6.98161 -5.79105 -3.07945 2.05989 2.72412 3.15012 3.41238 3.46134 3.47098 4.46849 4.56054 4.74563 4.95173 4.97891 5.10596 5.12260 5.23610 5.29154 5.36477 5.39800 5.49329 5.58255 5.60513 5.65456 5.69280 5.70622 5.80708 5.90560 5.99618 6.03133 6.13376 6.16105 6.32199 6.36160 6.40179 6.42290 6.46271 6.56177 6.58859 6.68658 6.82794 6.95982 7.05383 7.55367 7.66343 8.27818 8.39094 9.50445 10.07974 10.42901 11.43251 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.004008 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.684345 B = 6984.809491 C = 7936.809175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.079 4.079 4 C -0.135 4.135 5 C 0.513 3.487 6 O -0.552 6.552 7 N -0.607 5.607 8 C 0.106 3.894 9 C -0.152 4.152 10 C 0.184 3.816 11 H 0.047 0.953 12 N -0.720 5.720 13 C -0.239 4.239 14 H 0.069 0.931 15 C -0.012 4.012 16 N -0.932 5.932 17 Si 0.905 3.095 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.287 1.287 21 C -0.104 4.104 22 H 0.069 0.931 23 C -0.112 4.112 24 C -0.152 4.152 25 C 0.118 3.882 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.989 -8.599 -15.089 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.117 4.117 4 C -0.175 4.175 5 C 0.301 3.699 6 O -0.430 6.430 7 N -0.340 5.340 8 C -0.017 4.017 9 C -0.193 4.193 10 C 0.073 3.927 11 H 0.065 0.935 12 N -0.360 5.360 13 C -0.371 4.371 14 H 0.087 0.913 15 C -0.208 4.208 16 N -0.580 5.580 17 Si 0.736 3.264 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.213 1.213 21 C -0.124 4.124 22 H 0.087 0.913 23 C -0.150 4.150 24 C -0.210 4.210 25 C -0.004 4.004 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.969 -8.218 -15.393 17.895 hybrid contribution 0.351 -0.245 1.139 1.217 sum -3.619 -8.463 -14.254 16.967 Atomic orbital electron populations 1.23876 0.96006 1.01859 1.01366 1.22986 0.96099 0.98393 0.99717 1.20511 0.97836 0.95307 0.98017 1.21643 0.98936 0.95892 1.01049 1.20661 0.79385 0.88942 0.80907 1.90663 1.66124 1.48529 1.37716 1.48206 1.39466 1.18587 1.27716 1.21879 1.01128 0.90731 0.87973 1.22687 1.02003 1.00364 0.94294 1.20181 0.96230 0.90269 0.86009 0.93475 1.42406 1.48212 1.40769 1.04658 1.19167 1.15384 1.13624 0.88875 0.91301 1.24724 0.99717 0.98636 0.97712 1.69647 1.39059 1.26236 1.23076 0.86304 0.79986 0.77875 0.82214 1.21313 1.21760 1.21329 1.21771 1.00532 0.96071 0.94042 0.91278 1.21450 0.98319 0.94271 1.00942 1.21844 1.01042 0.98926 0.99170 1.21729 0.95567 0.84655 0.98473 0.88516 0.88572 0.87372 0.90761 0.90325 0.88938 0.88736 0.90408 0.91502 0.92205 0.90577 0.78204 0.93460 0.92486 0.89812 0.93224 0.93011 0.93178 0.89211 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 14.32 29.02 0.42 -1.18 16 2 C -0.15 -1.32 9.52 -36.03 -0.34 -1.66 16 3 C -0.08 -0.81 4.95 -27.88 -0.14 -0.94 16 4 C -0.14 -1.39 4.03 -27.88 -0.11 -1.50 16 5 C 0.51 7.20 7.70 -10.99 -0.08 7.11 16 6 O -0.55 -9.52 15.40 5.56 0.09 -9.43 16 7 N -0.61 -8.42 2.97 -172.79 -0.51 -8.93 16 8 C 0.11 1.33 6.34 -3.71 -0.02 1.30 16 9 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 10 C 0.18 3.40 2.19 -67.88 -0.15 3.26 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 12 N -0.72 -17.03 4.33 -53.38 -0.23 -17.26 16 13 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 14 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 17 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.10 -1.71 1.92 -90.51 -0.17 -1.88 16 22 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 23 C -0.11 -1.82 5.31 -26.73 -0.14 -1.96 16 24 C -0.15 -2.14 9.67 37.16 0.36 -1.79 16 25 C 0.12 1.73 5.32 -3.73 -0.02 1.71 16 26 H 0.10 0.79 7.84 -52.49 -0.41 0.38 16 27 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 28 H 0.11 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 30 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.09 0.77 7.94 -51.93 -0.41 0.35 16 32 H 0.09 0.91 7.69 -51.93 -0.40 0.51 16 33 H 0.08 0.78 5.93 -51.93 -0.31 0.47 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.38 9.86 7.51 -40.82 -0.31 9.55 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.62 7.22 -51.93 -0.37 1.25 16 41 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.39 5.72 -51.93 -0.30 1.09 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -30.16 356.87 -8.26 -38.43 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -7.87 Total: 8.79 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -0.81 Total: -7.04 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.02 Total: -52.93 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.16 -8.26 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.819 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds