Wall clock time and date at job start Tue Mar 31 2020 03:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 119.99927 * 2 1 4 4 C 1.53006 * 109.47193 * 125.00504 * 3 2 1 5 5 C 1.50698 * 109.47261 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00077 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99826 * 180.02562 * 5 4 3 8 8 C 1.46923 * 120.63212 * 0.02562 * 7 5 4 9 9 C 1.53194 * 108.77647 * 233.59136 * 8 7 5 10 10 C 1.53043 * 109.33394 * 305.37893 * 9 8 7 11 11 H 1.08997 * 109.43276 * 301.31227 * 10 9 8 12 12 N 1.46504 * 109.48409 * 181.35635 * 10 9 8 13 13 C 1.36936 * 120.00146 * 84.91354 * 12 10 9 14 14 H 1.07996 * 119.99809 * 0.02562 * 13 12 10 15 15 C 1.38810 * 119.99872 * 180.02562 * 13 12 10 16 16 N 1.31622 * 120.00307 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99887 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47012 * 59.99912 * 17 15 13 19 19 H 1.48501 * 109.47382 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47278 * 299.99813 * 17 15 13 21 21 C 1.53043 * 109.54078 * 61.32181 * 10 9 8 22 22 H 1.08998 * 109.49998 * 58.64627 * 21 10 9 23 23 C 1.52999 * 109.49536 * 178.71597 * 21 10 9 24 24 C 1.53006 * 109.46626 * 184.93296 * 23 21 10 25 25 C 1.46925 * 120.62812 * 180.02562 * 7 5 4 26 26 H 1.07998 * 120.00264 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99989 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00264 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47024 * 5.00996 * 3 2 1 30 30 H 1.08999 * 109.47859 * 245.00620 * 3 2 1 31 31 H 1.08996 * 109.46969 * 60.00026 * 4 3 2 32 32 H 1.09003 * 109.46446 * 300.00115 * 4 3 2 33 33 H 1.09001 * 109.58317 * 353.37158 * 8 7 5 34 34 H 1.08994 * 109.58438 * 113.79746 * 8 7 5 35 35 H 1.08998 * 109.50126 * 65.31040 * 9 8 7 36 36 H 1.09002 * 109.49717 * 185.38608 * 9 8 7 37 37 H 0.97003 * 119.99543 * 264.91739 * 12 10 9 38 38 H 0.96997 * 120.00298 * 179.97438 * 16 15 13 39 39 H 1.08993 * 109.47839 * 64.93365 * 23 21 10 40 40 H 1.09000 * 109.47160 * 304.92927 * 23 21 10 41 41 H 1.09000 * 109.47050 * 299.99699 * 24 23 21 42 42 H 1.09001 * 109.46801 * 59.99811 * 24 23 21 43 43 H 1.09001 * 109.46998 * 179.97438 * 24 23 21 44 44 H 1.09003 * 109.58946 * 6.62043 * 25 7 5 45 45 H 1.09000 * 109.58295 * 246.19794 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7881 2.6384 1.1820 6 8 3.5696 3.4648 0.3216 7 7 4.7052 2.8870 2.1378 8 6 4.9822 1.8951 3.1857 9 6 4.8318 2.5678 4.5537 10 6 5.7270 3.8079 4.6097 11 1 6.7628 3.5155 4.4374 12 7 5.6103 4.4357 5.9283 13 6 6.3816 3.9914 6.9688 14 1 7.0763 3.1785 6.8174 15 6 6.2706 4.5859 8.2182 16 7 5.4244 5.5770 8.4027 17 14 7.3233 3.9803 9.6376 18 1 8.7588 4.1378 9.2915 19 1 7.0180 4.7747 10.8546 20 1 7.0305 2.5474 9.8949 21 6 5.2917 4.8026 3.5311 22 1 4.2486 5.0768 3.6887 23 6 6.1666 6.0553 3.6088 24 6 5.6533 7.0983 2.6139 25 6 5.4470 4.1552 2.1517 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0897 30 1 2.6212 1.4028 -0.9314 31 1 3.7400 0.5066 1.0919 32 1 2.4772 1.2355 2.1130 33 1 4.2741 1.0703 3.1043 34 1 5.9990 1.5190 3.0731 35 1 3.7930 2.8627 4.7019 36 1 5.1272 1.8697 5.3369 37 1 4.9865 5.1660 6.0641 38 1 5.3465 5.9922 9.2758 39 1 7.1963 5.7953 3.3637 40 1 6.1258 6.4650 4.6181 41 1 5.6942 6.6886 1.6047 42 1 4.6236 7.3583 2.8591 43 1 6.2763 7.9910 2.6696 44 1 5.0458 4.8217 1.3882 45 1 6.5018 3.9637 1.9548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716632826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:58 Heat of formation + Delta-G solvation = -42.651474 kcal Electronic energy + Delta-G solvation = -22579.317957 eV Core-core repulsion = 19402.945814 eV Total energy + Delta-G solvation = -3176.372143 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33501 -39.22957 -36.32178 -36.13662 -35.30812 -33.43526 -31.83951 -31.04258 -29.88468 -26.93527 -25.54824 -24.77372 -23.97370 -22.19155 -21.16240 -20.65210 -19.94715 -19.02482 -18.08037 -17.00449 -16.85441 -16.71438 -15.83939 -15.68053 -15.49623 -15.15292 -14.86426 -14.72247 -14.48228 -14.32395 -13.95274 -13.55734 -13.46389 -13.20922 -13.07792 -12.84542 -12.77167 -12.63245 -12.52904 -12.20534 -12.04271 -11.98490 -11.87883 -11.81929 -11.57466 -11.51806 -11.08435 -10.92330 -10.70744 -10.18752 -9.62874 -8.94851 -7.89782 -5.17405 1.41768 1.49370 1.51429 1.57266 1.64650 2.08448 2.59092 3.43142 3.52782 3.78005 3.82772 3.98456 4.02751 4.09853 4.20738 4.24012 4.34483 4.35866 4.46352 4.47387 4.48423 4.63920 4.68384 4.77384 4.81897 4.85992 4.90710 4.96977 5.02545 5.06831 5.10507 5.16530 5.23541 5.30075 5.39056 5.47900 5.52930 5.59326 5.68136 5.78312 5.94042 6.31297 6.46678 7.18796 7.37887 8.14312 8.37503 9.33623 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.004008 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.684345 B = 6984.809491 C = 7936.809175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.077 4.077 4 C -0.129 4.129 5 C 0.508 3.492 6 O -0.589 6.589 7 N -0.610 5.610 8 C 0.114 3.886 9 C -0.144 4.144 10 C 0.178 3.822 11 H 0.047 0.953 12 N -0.732 5.732 13 C -0.231 4.231 14 H 0.078 0.922 15 C -0.076 4.076 16 N -0.972 5.972 17 Si 0.968 3.032 18 H -0.279 1.279 19 H -0.301 1.301 20 H -0.277 1.277 21 C -0.092 4.092 22 H 0.049 0.951 23 C -0.107 4.107 24 C -0.145 4.145 25 C 0.125 3.875 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.370 0.630 38 H 0.248 0.752 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.353 -11.119 -16.286 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.174 4.174 3 C -0.115 4.115 4 C -0.168 4.168 5 C 0.298 3.702 6 O -0.470 6.470 7 N -0.341 5.341 8 C -0.008 4.008 9 C -0.185 4.185 10 C 0.070 3.930 11 H 0.065 0.935 12 N -0.370 5.370 13 C -0.363 4.363 14 H 0.096 0.904 15 C -0.268 4.268 16 N -0.623 5.623 17 Si 0.798 3.202 18 H -0.206 1.206 19 H -0.228 1.228 20 H -0.203 1.203 21 C -0.113 4.113 22 H 0.067 0.933 23 C -0.146 4.146 24 C -0.203 4.203 25 C 0.002 3.998 26 H 0.108 0.892 27 H 0.130 0.870 28 H 0.146 0.854 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.141 0.859 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.201 0.799 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.317 -10.791 -16.628 20.098 hybrid contribution 0.136 0.552 1.429 1.538 sum -3.181 -10.239 -15.199 18.600 Atomic orbital electron populations 1.24039 0.96180 1.02383 1.00836 1.23012 0.96142 0.98160 1.00120 1.20448 0.97528 0.95727 0.97753 1.21693 0.99147 0.94451 1.01498 1.21364 0.78891 0.89843 0.80097 1.90650 1.67073 1.50058 1.39209 1.48296 1.39369 1.18412 1.28054 1.21934 1.03411 0.90615 0.84890 1.22485 1.00168 0.99032 0.96802 1.20427 0.96849 0.91508 0.84257 0.93470 1.42590 1.47567 1.40762 1.06128 1.19567 1.14595 1.12704 0.89423 0.90394 1.25484 1.01557 0.99453 1.00345 1.69816 1.41336 1.28092 1.23031 0.85291 0.78615 0.77461 0.78876 1.20576 1.22814 1.20315 1.21617 0.99154 0.95800 0.94679 0.93281 1.21357 0.98937 0.94798 0.99459 1.21776 1.00673 0.98723 0.99087 1.21585 0.96590 0.85192 0.96476 0.89198 0.86985 0.85376 0.92761 0.91138 0.85887 0.87577 0.86995 0.89548 0.93739 0.91346 0.79881 0.94313 0.91703 0.93530 0.91809 0.93722 0.92079 0.89879 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.84 14.32 67.79 0.97 -1.87 16 2 C -0.16 -2.27 9.52 25.65 0.24 -2.02 16 3 C -0.08 -1.43 4.95 29.85 0.15 -1.28 16 4 C -0.13 -2.24 4.03 29.85 0.12 -2.12 16 5 C 0.51 13.24 7.70 87.66 0.67 13.91 16 6 O -0.59 -19.84 15.40 -3.04 -0.05 -19.89 16 7 N -0.61 -15.49 2.97 -818.97 -2.43 -17.93 16 8 C 0.11 2.47 6.34 86.36 0.55 3.02 16 9 C -0.14 -4.47 5.66 30.67 0.17 -4.29 16 10 C 0.18 6.53 2.19 45.02 0.10 6.63 16 11 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 12 N -0.73 -35.22 4.33 -322.81 -1.40 -36.62 16 13 C -0.23 -12.25 9.93 84.03 0.83 -11.41 16 14 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 15 C -0.08 -4.28 5.50 84.86 0.47 -3.82 16 16 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 17 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 C -0.09 -3.02 1.92 -10.73 -0.02 -3.04 16 22 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 23 C -0.11 -3.52 5.31 30.60 0.16 -3.36 16 24 C -0.15 -4.03 9.67 71.98 0.70 -3.34 16 25 C 0.12 3.47 5.32 86.35 0.46 3.93 16 26 H 0.09 1.39 7.84 -2.91 -0.02 1.37 16 27 H 0.11 1.25 8.06 -2.91 -0.02 1.22 16 28 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16 29 H 0.05 1.21 7.75 -2.39 -0.02 1.19 16 30 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 31 H 0.12 1.45 7.94 -2.39 -0.02 1.43 16 32 H 0.11 1.67 7.69 -2.39 -0.02 1.65 16 33 H 0.11 1.73 5.93 -2.39 -0.01 1.71 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.37 19.75 7.51 -92.71 -0.70 19.06 16 38 H 0.25 14.76 8.31 -92.71 -0.77 13.98 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.88 7.22 -2.39 -0.02 1.86 16 41 H 0.06 1.59 6.70 -2.39 -0.02 1.58 16 42 H 0.04 1.28 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.08 2.48 5.72 -2.39 -0.01 2.46 16 45 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -66.74 356.87 4.26 -62.48 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.25 Total: 32.41 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 5.58 Total: -9.08 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -3.55 Total: -113.17 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -66.74 4.26 -62.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.832 kcal (2) G-P(sol) polarization free energy of solvation -66.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds