Wall clock time and date at job start Tue Mar 31 2020 01:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47429 * 2 1 4 4 C 1.52998 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46790 * 55.00446 * 4 3 2 6 6 C 1.52991 * 109.47543 * 295.00218 * 4 3 2 7 7 C 1.50700 * 109.46769 * 175.00124 * 4 3 2 8 8 O 1.21280 * 120.00247 * 34.90998 * 7 4 3 9 9 N 1.34784 * 119.99914 * 214.91058 * 7 4 3 10 10 C 1.46659 * 125.33335 * 174.89248 * 9 7 4 11 11 C 1.53676 * 107.96824 * 179.29336 * 10 9 7 12 12 H 1.08999 * 113.31692 * 106.33165 * 11 10 9 13 13 C 1.53983 * 109.29307 * 233.06156 * 11 10 9 14 14 N 1.46757 * 106.67690 * 82.34686 * 13 11 10 15 15 C 1.36941 * 125.33283 * 198.43163 * 14 13 11 16 16 H 1.07997 * 119.99609 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99697 * 0.02562 * 15 14 13 18 18 N 1.31619 * 120.00266 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99685 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46895 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47119 * 120.00376 * 19 17 15 22 22 H 1.48497 * 109.47112 * 240.00542 * 19 17 15 23 23 C 1.46658 * 109.33275 * 18.44594 * 14 13 11 24 24 C 1.53670 * 107.96981 * 359.29186 * 23 14 13 25 25 H 1.09003 * 112.77652 * 106.01805 * 24 23 14 26 26 C 1.46756 * 125.33205 * 354.89527 * 9 7 4 27 27 H 1.08997 * 109.47566 * 59.99344 * 1 2 3 28 28 H 1.09000 * 109.47618 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46571 * 299.99595 * 1 2 3 30 30 H 1.09001 * 109.46963 * 240.00168 * 2 1 3 31 31 H 1.09008 * 109.47194 * 120.00348 * 2 1 3 32 32 H 1.09001 * 109.46911 * 60.00136 * 3 2 1 33 33 H 1.08992 * 109.46869 * 300.00589 * 3 2 1 34 34 H 1.09005 * 109.47247 * 65.17207 * 6 4 3 35 35 H 1.09000 * 109.47484 * 185.17121 * 6 4 3 36 36 H 1.09008 * 109.47137 * 305.17421 * 6 4 3 37 37 H 1.08998 * 109.76884 * 59.66455 * 10 9 7 38 38 H 1.08997 * 109.76510 * 298.92042 * 10 9 7 39 39 H 1.09001 * 110.01541 * 323.03711 * 13 11 10 40 40 H 1.08998 * 110.01620 * 201.64865 * 13 11 10 41 41 H 0.97001 * 119.99711 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.76768 * 239.66392 * 23 14 13 43 43 H 1.08994 * 109.77009 * 118.92372 * 23 14 13 44 44 H 1.09005 * 110.02116 * 79.14438 * 26 9 7 45 45 H 1.09001 * 110.01872 * 317.75410 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9329 0.8531 -0.8428 6 6 4.0806 0.8326 1.3063 7 6 4.0723 2.8578 -0.1245 8 8 3.4627 3.7657 0.3999 9 7 5.1991 3.1148 -0.8179 10 6 5.7342 4.4504 -1.1022 11 6 7.0365 4.2795 -1.8998 12 1 6.9337 4.5365 -2.9541 13 6 8.1662 5.0599 -1.2027 14 7 8.6692 4.2002 -0.1250 15 6 9.4084 4.6245 0.9469 16 1 9.7352 3.9146 1.6923 17 6 9.7376 5.9669 1.0751 18 7 9.3389 6.8320 0.1669 19 14 10.7467 6.5455 2.5368 20 1 11.0677 5.3857 3.4069 21 1 12.0067 7.1655 2.0542 22 1 9.9681 7.5452 3.3112 23 6 8.2563 2.8155 -0.3758 24 6 7.4325 2.7939 -1.6728 25 1 7.9793 2.3658 -2.5130 26 6 6.0828 2.1019 -1.4070 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.7949 -0.2183 1.3529 35 1 5.1667 0.9158 1.3462 36 1 3.6440 1.3656 2.1509 37 1 5.9401 4.9717 -0.1673 38 1 5.0136 5.0187 -1.6902 39 1 7.7765 5.9894 -0.7876 40 1 8.9650 5.2740 -1.9128 41 1 9.5686 7.7701 0.2568 42 1 7.6473 2.4563 0.4538 43 1 9.1368 2.1828 -0.4878 44 1 5.6600 1.7366 -2.3429 45 1 6.2185 1.2746 -0.7104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717009087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:45 Heat of formation + Delta-G solvation = -26.684502 kcal Electronic energy + Delta-G solvation = -23069.057186 eV Core-core repulsion = 19893.377422 eV Total energy + Delta-G solvation = -3175.679763 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.28699 -38.45221 -35.94491 -34.89974 -32.42277 -31.87739 -30.07998 -29.60439 -26.77676 -25.87241 -25.45813 -23.87217 -22.50347 -20.84080 -20.05164 -19.35370 -18.72262 -17.20957 -16.63250 -15.87192 -15.46491 -15.21272 -14.70710 -14.45680 -14.06648 -13.67555 -13.40366 -13.23994 -12.99343 -12.64578 -12.45662 -12.28170 -12.07476 -11.99582 -11.89728 -11.60720 -11.36362 -11.29912 -11.10141 -10.95310 -10.88002 -10.82524 -10.66023 -10.37829 -10.09279 -9.97065 -9.84547 -9.61501 -9.40685 -8.63745 -8.25001 -6.83639 -5.69002 -3.07423 2.88966 3.28816 3.40195 3.45678 3.48141 4.47806 4.53226 4.65702 4.79583 4.80283 4.98209 5.06930 5.14404 5.20879 5.26985 5.43142 5.48337 5.53213 5.55484 5.63080 5.63990 5.72400 5.75229 5.77672 5.81141 5.84206 5.95140 5.98163 6.02797 6.16843 6.22344 6.24888 6.33931 6.42841 6.62474 6.68783 6.75985 6.83209 7.44805 7.62348 7.81975 7.85480 8.31959 8.45908 9.21915 9.82520 10.45366 11.37704 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026522 B = 0.004092 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.459994 B = 6840.496588 C = 7115.940881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.102 4.102 4 C -0.105 4.105 5 H 0.086 0.914 6 C -0.141 4.141 7 C 0.529 3.471 8 O -0.544 6.544 9 N -0.608 5.608 10 C 0.121 3.879 11 C -0.123 4.123 12 H 0.087 0.913 13 C 0.170 3.830 14 N -0.600 5.600 15 C -0.224 4.224 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.145 3.855 24 C -0.110 4.110 25 H 0.097 0.903 26 C 0.111 3.889 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.019 0.981 41 H 0.252 0.748 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.061 0.939 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.889 -14.012 -4.866 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.126 4.126 5 H 0.105 0.895 6 C -0.199 4.199 7 C 0.317 3.683 8 O -0.422 6.422 9 N -0.341 5.341 10 C -0.001 4.001 11 C -0.144 4.144 12 H 0.105 0.895 13 C 0.044 3.956 14 N -0.326 5.326 15 C -0.352 4.352 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.019 3.981 24 C -0.130 4.130 25 H 0.115 0.885 26 C -0.012 4.012 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.079 0.921 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.188 -13.340 -4.443 18.608 hybrid contribution 0.716 0.312 0.598 0.983 sum -11.473 -13.028 -3.845 17.780 Atomic orbital electron populations 1.21765 0.95865 1.01382 1.01960 1.21578 0.95863 0.96640 1.02096 1.21476 0.92463 0.96798 1.03296 1.21281 0.97356 0.93441 1.00545 0.89526 1.21750 1.01579 1.00709 0.95824 1.20285 0.79440 0.91066 0.77487 1.90681 1.57496 1.47464 1.46537 1.48305 1.23654 1.08512 1.53635 1.21846 0.93985 0.83731 1.00531 1.23197 0.96158 0.95845 0.99152 0.89457 1.21472 0.90846 0.94469 0.88776 1.44208 1.62144 1.01089 1.25163 1.19086 1.24778 0.92332 0.99054 0.90465 1.24787 1.01080 0.95927 0.98709 1.69867 1.50197 1.02149 1.34780 0.86012 0.79399 0.78481 0.81689 1.20548 1.21746 1.21702 1.21128 0.95131 0.88908 0.92953 1.22847 0.94541 0.96124 0.99441 0.88508 1.21977 0.90231 0.91486 0.97516 0.92791 0.92872 0.92660 0.92084 0.91631 0.90748 0.91882 0.91445 0.92075 0.91792 0.90251 0.92603 0.88530 0.96294 0.93736 0.96023 0.96059 0.92083 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.05 5.69 -26.73 -0.15 -1.20 16 3 C -0.10 -1.14 4.26 -26.73 -0.11 -1.25 16 4 C -0.10 -1.27 2.19 -91.78 -0.20 -1.47 16 5 H 0.09 0.88 7.19 -51.93 -0.37 0.51 16 6 C -0.14 -1.58 8.80 37.15 0.33 -1.26 16 7 C 0.53 8.90 6.83 -10.98 -0.07 8.82 16 8 O -0.54 -11.33 16.69 5.56 0.09 -11.23 16 9 N -0.61 -10.13 3.31 -172.33 -0.57 -10.70 16 10 C 0.12 2.28 6.24 -3.60 -0.02 2.26 16 11 C -0.12 -2.23 4.09 -88.47 -0.36 -2.59 16 12 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 13 C 0.17 4.01 4.84 -3.39 -0.02 3.99 16 14 N -0.60 -15.11 3.38 -171.89 -0.58 -15.69 16 15 C -0.22 -6.25 10.25 -15.06 -0.15 -6.40 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.26 5.48 -17.43 -0.10 -0.36 16 18 N -0.92 -26.82 10.16 55.49 0.56 -26.26 16 19 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C 0.14 2.92 6.63 -3.61 -0.02 2.90 16 24 C -0.11 -1.76 4.09 -88.48 -0.36 -2.12 16 25 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 26 C 0.11 1.51 5.21 -3.39 -0.02 1.49 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.52 6.68 -51.92 -0.35 0.17 16 32 H 0.07 0.93 8.02 -51.93 -0.42 0.52 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.58 6.82 -51.93 -0.35 0.23 16 35 H 0.06 0.74 7.91 -51.93 -0.41 0.33 16 36 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 37 H 0.08 1.82 7.47 -51.93 -0.39 1.44 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.10 2.60 5.83 -51.93 -0.30 2.30 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.02 0.45 7.47 -51.93 -0.39 0.06 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.88 7.28 -51.93 -0.38 0.50 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -31.98 347.42 -9.16 -41.14 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.98 Total: -1.76 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.90 Total: 2.00 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.59 Total: -52.65 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.98 -9.16 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717009087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.459 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds