Wall clock time and date at job start Tue Mar 31 2020 01:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47429 * 2 1 4 4 C 1.52998 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46790 * 55.00446 * 4 3 2 6 6 C 1.52991 * 109.47543 * 295.00218 * 4 3 2 7 7 C 1.50700 * 109.46769 * 175.00124 * 4 3 2 8 8 O 1.21280 * 120.00247 * 34.90998 * 7 4 3 9 9 N 1.34784 * 119.99914 * 214.91058 * 7 4 3 10 10 C 1.46659 * 125.33335 * 174.89248 * 9 7 4 11 11 C 1.53676 * 107.96824 * 179.29336 * 10 9 7 12 12 H 1.08999 * 113.31692 * 106.33165 * 11 10 9 13 13 C 1.53983 * 109.29307 * 233.06156 * 11 10 9 14 14 N 1.46757 * 106.67690 * 82.34686 * 13 11 10 15 15 C 1.36941 * 125.33283 * 198.43163 * 14 13 11 16 16 H 1.07997 * 119.99609 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99697 * 0.02562 * 15 14 13 18 18 N 1.31619 * 120.00266 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99685 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46895 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47119 * 120.00376 * 19 17 15 22 22 H 1.48497 * 109.47112 * 240.00542 * 19 17 15 23 23 C 1.46658 * 109.33275 * 18.44594 * 14 13 11 24 24 C 1.53670 * 107.96981 * 359.29186 * 23 14 13 25 25 H 1.09003 * 112.77652 * 106.01805 * 24 23 14 26 26 C 1.46756 * 125.33205 * 354.89527 * 9 7 4 27 27 H 1.08997 * 109.47566 * 59.99344 * 1 2 3 28 28 H 1.09000 * 109.47618 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46571 * 299.99595 * 1 2 3 30 30 H 1.09001 * 109.46963 * 240.00168 * 2 1 3 31 31 H 1.09008 * 109.47194 * 120.00348 * 2 1 3 32 32 H 1.09001 * 109.46911 * 60.00136 * 3 2 1 33 33 H 1.08992 * 109.46869 * 300.00589 * 3 2 1 34 34 H 1.09005 * 109.47247 * 65.17207 * 6 4 3 35 35 H 1.09000 * 109.47484 * 185.17121 * 6 4 3 36 36 H 1.09008 * 109.47137 * 305.17421 * 6 4 3 37 37 H 1.08998 * 109.76884 * 59.66455 * 10 9 7 38 38 H 1.08997 * 109.76510 * 298.92042 * 10 9 7 39 39 H 1.09001 * 110.01541 * 323.03711 * 13 11 10 40 40 H 1.08998 * 110.01620 * 201.64865 * 13 11 10 41 41 H 0.97001 * 119.99711 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.76768 * 239.66392 * 23 14 13 43 43 H 1.08994 * 109.77009 * 118.92372 * 23 14 13 44 44 H 1.09005 * 110.02116 * 79.14438 * 26 9 7 45 45 H 1.09001 * 110.01872 * 317.75410 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9329 0.8531 -0.8428 6 6 4.0806 0.8326 1.3063 7 6 4.0723 2.8578 -0.1245 8 8 3.4627 3.7657 0.3999 9 7 5.1991 3.1148 -0.8179 10 6 5.7342 4.4504 -1.1022 11 6 7.0365 4.2795 -1.8998 12 1 6.9337 4.5365 -2.9541 13 6 8.1662 5.0599 -1.2027 14 7 8.6692 4.2002 -0.1250 15 6 9.4084 4.6245 0.9469 16 1 9.7352 3.9146 1.6923 17 6 9.7376 5.9669 1.0751 18 7 9.3389 6.8320 0.1669 19 14 10.7467 6.5455 2.5368 20 1 11.0677 5.3857 3.4069 21 1 12.0067 7.1655 2.0542 22 1 9.9681 7.5452 3.3112 23 6 8.2563 2.8155 -0.3758 24 6 7.4325 2.7939 -1.6728 25 1 7.9793 2.3658 -2.5130 26 6 6.0828 2.1019 -1.4070 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.7949 -0.2183 1.3529 35 1 5.1667 0.9158 1.3462 36 1 3.6440 1.3656 2.1509 37 1 5.9401 4.9717 -0.1673 38 1 5.0136 5.0187 -1.6902 39 1 7.7765 5.9894 -0.7876 40 1 8.9650 5.2740 -1.9128 41 1 9.5686 7.7701 0.2568 42 1 7.6473 2.4563 0.4538 43 1 9.1368 2.1828 -0.4878 44 1 5.6600 1.7366 -2.3429 45 1 6.2185 1.2746 -0.7104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717009087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:44 Heat of formation + Delta-G solvation = -46.328448 kcal Electronic energy + Delta-G solvation = -23069.909011 eV Core-core repulsion = 19893.377422 eV Total energy + Delta-G solvation = -3176.531589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64474 -39.87121 -36.92518 -36.57069 -34.11658 -32.94583 -31.58588 -31.26861 -27.60136 -27.57314 -27.06781 -25.24253 -23.72053 -21.86157 -21.64960 -20.83895 -19.96872 -18.88076 -18.16106 -17.26359 -16.81271 -16.42976 -16.30170 -15.78959 -15.51595 -14.88580 -14.58246 -14.51145 -14.40074 -13.87061 -13.72518 -13.52950 -13.46914 -13.28956 -13.11952 -12.97821 -12.81521 -12.78129 -12.76469 -12.16048 -12.00384 -11.89991 -11.87039 -11.78799 -11.64860 -11.50714 -11.40764 -11.36968 -10.80323 -10.65356 -9.61769 -8.87810 -7.82991 -5.22918 1.42430 1.43995 1.53649 1.59914 2.03599 2.46668 3.29150 3.39392 3.48410 3.70670 3.78399 3.86055 3.95200 4.00317 4.22857 4.30855 4.33468 4.37106 4.39033 4.52953 4.61040 4.63293 4.78522 4.81881 4.86367 4.88892 4.91017 4.94326 5.01733 5.04460 5.11541 5.16260 5.21360 5.28156 5.34699 5.36188 5.44294 5.47119 5.52682 5.58504 5.80698 6.26944 6.58128 7.10106 7.15673 7.79402 8.39599 9.21598 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026522 B = 0.004092 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.459994 B = 6840.496588 C = 7115.940881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.100 4.100 4 C -0.094 4.094 5 H 0.121 0.879 6 C -0.139 4.139 7 C 0.518 3.482 8 O -0.598 6.598 9 N -0.611 5.611 10 C 0.128 3.872 11 C -0.109 4.109 12 H 0.122 0.878 13 C 0.175 3.825 14 N -0.623 5.623 15 C -0.238 4.238 16 H 0.078 0.922 17 C -0.067 4.067 18 N -0.948 5.948 19 Si 0.976 3.024 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.296 1.296 23 C 0.137 3.863 24 C -0.095 4.095 25 H 0.135 0.865 26 C 0.112 3.888 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.023 0.977 38 H 0.061 0.939 39 H 0.053 0.947 40 H -0.005 1.005 41 H 0.246 0.754 42 H 0.014 0.986 43 H 0.031 0.969 44 H 0.108 0.892 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.316 -17.617 -6.208 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.138 4.138 4 C -0.115 4.115 5 H 0.139 0.861 6 C -0.196 4.196 7 C 0.309 3.691 8 O -0.479 6.479 9 N -0.343 5.343 10 C 0.004 3.996 11 C -0.129 4.129 12 H 0.140 0.860 13 C 0.049 3.951 14 N -0.349 5.349 15 C -0.367 4.367 16 H 0.096 0.904 17 C -0.260 4.260 18 N -0.597 5.597 19 Si 0.805 3.195 20 H -0.191 1.191 21 H -0.215 1.215 22 H -0.223 1.223 23 C 0.012 3.988 24 C -0.114 4.114 25 H 0.153 0.847 26 C -0.010 4.010 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.013 0.987 41 H 0.056 0.944 42 H 0.032 0.968 43 H 0.049 0.951 44 H 0.126 0.874 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.606 -17.009 -5.800 21.951 hybrid contribution 0.849 1.454 1.053 1.986 sum -11.757 -15.555 -4.747 20.068 Atomic orbital electron populations 1.21783 0.95650 1.02209 1.01534 1.21551 0.96046 0.94489 1.03375 1.21458 0.91879 0.98630 1.01817 1.21356 0.97745 0.90181 1.02214 0.86119 1.21768 1.00839 1.02449 0.94548 1.21334 0.78870 0.92690 0.76187 1.90654 1.59091 1.49543 1.48574 1.48467 1.24017 1.08185 1.53632 1.21543 0.94876 0.85163 0.97992 1.23044 0.93179 0.96755 0.99909 0.86031 1.21189 0.91738 0.93984 0.88166 1.44512 1.61910 1.03659 1.24817 1.19437 1.24680 0.92632 0.99994 0.90378 1.25614 1.02728 0.96242 1.01400 1.70125 1.51340 1.01901 1.36365 0.85037 0.77696 0.77998 0.78798 1.19085 1.21536 1.22304 1.21380 0.95983 0.86250 0.95161 1.22919 0.95556 0.94719 0.98227 0.84692 1.22243 0.88128 0.90596 1.00010 0.92975 0.91373 0.93474 0.90258 0.90739 0.93181 0.92640 0.87916 0.92859 0.93831 0.95893 0.92034 0.92871 0.98724 0.94448 0.96766 0.95123 0.87426 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.58 5.69 30.59 0.17 -1.41 16 3 C -0.10 -2.04 4.26 30.59 0.13 -1.91 16 4 C -0.09 -2.02 2.19 -11.54 -0.03 -2.04 16 5 H 0.12 1.80 7.19 -2.39 -0.02 1.79 16 6 C -0.14 -2.77 8.80 71.98 0.63 -2.14 16 7 C 0.52 17.08 6.83 87.66 0.60 17.68 16 8 O -0.60 -25.78 16.69 -3.03 -0.05 -25.83 16 9 N -0.61 -19.37 3.31 -817.52 -2.70 -22.08 16 10 C 0.13 4.87 6.24 86.58 0.54 5.41 16 11 C -0.11 -3.81 4.09 -9.40 -0.04 -3.85 16 12 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 13 C 0.17 8.53 4.84 86.66 0.42 8.95 16 14 N -0.62 -32.04 3.38 -697.73 -2.35 -34.39 16 15 C -0.24 -13.63 10.25 84.03 0.86 -12.77 16 16 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 17 C -0.07 -3.91 5.48 84.86 0.47 -3.44 16 18 N -0.95 -57.81 10.16 21.65 0.22 -57.59 16 19 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 23 C 0.14 5.35 6.63 86.57 0.57 5.93 16 24 C -0.10 -2.71 4.09 -9.41 -0.04 -2.75 16 25 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 26 C 0.11 2.52 5.21 86.66 0.45 2.97 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.89 6.68 -2.38 -0.02 0.87 16 32 H 0.05 1.26 8.02 -2.39 -0.02 1.24 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 1.34 6.82 -2.38 -0.02 1.33 16 35 H 0.05 1.15 7.91 -2.39 -0.02 1.13 16 36 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.02 1.12 7.47 -2.39 -0.02 1.10 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 39 H 0.05 3.06 5.83 -2.39 -0.01 3.04 16 40 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 41 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.01 0.58 7.47 -2.39 -0.02 0.56 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.09 1.78 7.28 -2.39 -0.02 1.76 16 Total: -1.00 -76.13 347.42 3.54 -72.59 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.94 Total: 8.91 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.46 Total: 9.30 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -4.84 Total: -114.06 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.83 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -76.13 3.54 -72.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717009087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.266 kcal (2) G-P(sol) polarization free energy of solvation -76.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds