Wall clock time and date at job start Tue Mar 31 2020 02:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50698 * 119.99829 * 2 1 4 4 C 1.52998 * 109.47203 * 244.63287 * 3 2 1 5 5 C 1.52995 * 109.47399 * 4.63499 * 3 2 1 6 6 C 1.53002 * 109.47325 * 185.61850 * 5 3 2 7 7 C 1.50705 * 109.46976 * 124.63711 * 3 2 1 8 8 O 1.21278 * 119.99566 * 239.99628 * 7 3 2 9 9 N 1.34777 * 120.00145 * 59.99926 * 7 3 2 10 10 C 1.46496 * 119.99801 * 180.02562 * 9 7 3 11 11 H 1.08992 * 112.85200 * 334.66183 * 10 9 7 12 12 C 1.53785 * 113.61784 * 105.86405 * 10 9 7 13 13 C 1.54052 * 86.98657 * 89.15428 * 12 10 9 14 14 H 1.08992 * 113.69379 * 270.87504 * 13 12 10 15 15 C 1.53003 * 113.61632 * 139.97874 * 13 12 10 16 16 N 1.46494 * 109.46966 * 87.50548 * 15 13 12 17 17 C 1.36936 * 120.00220 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99986 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00227 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00121 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99909 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47379 * 60.00757 * 21 19 17 23 23 H 1.48501 * 109.46942 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47408 * 300.00557 * 21 19 17 25 25 C 1.53784 * 87.07595 * 25.43549 * 13 12 10 26 26 H 1.07996 * 119.99632 * 175.15279 * 1 2 3 27 27 H 1.07999 * 119.99858 * 355.16613 * 1 2 3 28 28 H 1.07996 * 119.99936 * 179.71905 * 2 1 3 29 29 H 1.09005 * 109.46936 * 59.99735 * 4 3 2 30 30 H 1.08997 * 109.47766 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47193 * 300.00742 * 4 3 2 32 32 H 1.09002 * 109.47065 * 305.62054 * 5 3 2 33 33 H 1.09003 * 109.47335 * 65.61929 * 5 3 2 34 34 H 1.08998 * 109.46943 * 175.23257 * 6 5 3 35 35 H 1.08999 * 109.47247 * 295.23886 * 6 5 3 36 36 H 1.09001 * 109.46871 * 55.23184 * 6 5 3 37 37 H 0.97000 * 119.99572 * 359.97438 * 9 7 3 38 38 H 1.08990 * 113.61571 * 203.66507 * 12 10 9 39 39 H 1.09000 * 113.60874 * 334.56599 * 12 10 9 40 40 H 1.08999 * 109.47137 * 207.50791 * 15 13 12 41 41 H 1.09002 * 109.46726 * 327.50865 * 15 13 12 42 42 H 0.97005 * 120.00548 * 0.02562 * 16 15 13 43 43 H 0.96992 * 119.99955 * 179.97438 * 20 19 17 44 44 H 1.08994 * 113.61581 * 220.01998 * 25 13 12 45 45 H 1.09002 * 113.61922 * 89.11335 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.8537 1.4378 -1.3034 5 6 1.0734 2.4656 0.1166 6 6 1.8233 3.7919 -0.0240 7 6 3.0141 1.3364 1.1691 8 8 2.9098 2.2017 2.0123 9 7 3.9800 0.4027 1.2773 10 6 4.9036 0.4328 2.4141 11 1 5.0173 1.4293 2.8408 12 6 4.6268 -0.6582 3.4619 13 6 5.5717 -1.5640 2.6495 14 1 5.0684 -2.1330 1.8680 15 6 6.4883 -2.4287 3.5174 16 7 5.8052 -3.6807 3.8522 17 6 6.4350 -4.6186 4.6259 18 1 7.4353 -4.4353 4.9897 19 6 5.7875 -5.8047 4.9436 20 7 4.5683 -6.0280 4.5008 21 14 6.6465 -7.0839 5.9996 22 1 6.9801 -6.4925 7.3203 23 1 5.7486 -8.2509 6.1920 24 1 7.8941 -7.5255 5.3257 25 6 6.2406 -0.2762 2.1404 26 1 -0.5399 -0.9320 -0.0790 27 1 -0.5400 0.9320 0.0788 28 1 1.8500 -0.9353 0.0046 29 1 2.1662 1.4151 -2.1490 30 1 3.3984 2.3820 -1.3037 31 1 3.5591 0.6110 -1.3865 32 1 0.3255 2.3857 -0.6723 33 1 0.5817 2.4276 1.0886 34 1 1.1086 4.6149 -0.0259 35 1 2.5119 3.9104 0.8126 36 1 2.3836 3.7951 -0.9590 37 1 4.0632 -0.2896 0.6030 38 1 5.0026 -0.4147 4.4556 39 1 3.5923 -1.0015 3.4719 40 1 7.4045 -2.6499 2.9700 41 1 6.7331 -1.8920 4.4340 42 1 4.9069 -3.8456 3.5253 43 1 4.1161 -6.8569 4.7225 44 1 6.5081 -0.3112 1.0844 45 1 7.0569 0.0717 2.7735 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725364701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:03 Heat of formation + Delta-G solvation = 4.341950 kcal Electronic energy + Delta-G solvation = -22231.111378 eV Core-core repulsion = 19056.777023 eV Total energy + Delta-G solvation = -3174.334355 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69491 -38.86321 -36.56548 -34.55122 -33.19378 -32.03819 -30.88193 -29.52265 -26.84752 -25.49957 -25.35512 -23.60198 -22.71098 -21.41891 -21.23064 -19.06360 -18.89042 -17.06070 -16.89959 -16.08016 -15.71631 -15.06476 -14.75842 -14.61877 -14.45604 -14.09945 -13.93740 -13.42595 -13.30707 -12.89139 -12.74054 -12.50571 -12.31364 -12.15679 -12.06045 -11.92451 -11.63388 -11.39854 -11.01424 -10.90005 -10.80521 -10.76205 -10.46259 -10.33692 -10.09076 -10.04595 -9.81226 -9.59301 -9.32489 -8.94638 -8.81821 -6.88782 -5.74464 -3.02586 1.96099 2.64945 3.14199 3.45129 3.49261 3.50451 4.33191 4.46559 4.59368 4.63842 4.72482 4.83424 4.85677 5.06882 5.13864 5.15295 5.17371 5.32887 5.35636 5.48577 5.56462 5.59684 5.70257 5.74513 5.80703 5.85817 5.90296 5.95612 6.03675 6.08519 6.12498 6.23077 6.28885 6.36168 6.37230 6.44877 6.48788 6.67388 6.80279 6.95847 7.49293 7.71111 8.21298 8.44884 9.55676 10.15076 10.49502 11.48519 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027011 B = 0.003250 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.346749 B = 8612.087721 C = 9195.063315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.153 4.153 3 C -0.051 4.051 4 C -0.138 4.138 5 C -0.100 4.100 6 C -0.162 4.162 7 C 0.530 3.470 8 O -0.536 6.536 9 N -0.706 5.706 10 C 0.116 3.884 11 H 0.097 0.903 12 C -0.138 4.138 13 C -0.113 4.113 14 H 0.087 0.913 15 C 0.162 3.838 16 N -0.732 5.732 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.138 4.138 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.400 0.600 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.068 0.932 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.220 17.355 -13.414 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.171 4.171 3 C -0.054 4.054 4 C -0.196 4.196 5 C -0.138 4.138 6 C -0.219 4.219 7 C 0.316 3.684 8 O -0.412 6.412 9 N -0.357 5.357 10 C 0.010 3.990 11 H 0.115 0.885 12 C -0.177 4.177 13 C -0.131 4.131 14 H 0.105 0.895 15 C 0.035 3.965 16 N -0.376 5.376 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.176 4.176 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.134 0.866 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.235 0.765 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.164 17.899 -12.693 22.543 hybrid contribution 0.166 -1.420 0.225 1.448 sum -4.998 16.479 -12.468 21.260 Atomic orbital electron populations 1.24062 0.95962 1.02564 0.99161 1.22757 0.96250 0.96542 1.01566 1.19951 0.95365 0.95597 0.94500 1.21882 0.99954 1.02675 0.95069 1.21451 0.96847 0.93064 1.02451 1.21997 1.01038 0.96295 1.02577 1.20376 0.80645 0.80836 0.86573 1.90652 1.71748 1.36568 1.42266 1.45701 1.32329 1.31048 1.26609 1.21930 0.89647 0.99838 0.87536 0.88467 1.23447 1.00527 0.95640 0.98085 1.22795 0.97262 0.94515 0.98557 0.89516 1.20635 0.93647 0.87397 0.94832 1.42340 1.17701 1.15600 1.61932 1.19206 0.98320 0.96103 1.23422 0.91304 1.24736 0.96583 0.98366 1.01388 1.69647 1.12486 1.26156 1.50052 0.86268 0.78373 0.81216 0.80335 1.21287 1.21697 1.21303 1.23303 0.96187 0.96581 1.01572 0.87957 0.87651 0.86622 0.91259 0.91295 0.91983 0.91252 0.90971 0.93008 0.90743 0.92837 0.76527 0.89213 0.91380 0.96452 0.96239 0.78347 0.93518 0.91320 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 13.71 29.01 0.40 -1.19 16 2 C -0.15 -1.44 8.54 -36.03 -0.31 -1.75 16 3 C -0.05 -0.49 0.62 -156.81 -0.10 -0.59 16 4 C -0.14 -1.05 7.85 37.16 0.29 -0.75 16 5 C -0.10 -0.95 3.34 -26.73 -0.09 -1.04 16 6 C -0.16 -1.53 9.25 37.16 0.34 -1.19 16 7 C 0.53 6.64 6.21 -10.98 -0.07 6.57 16 8 O -0.54 -8.50 13.63 5.56 0.08 -8.42 16 9 N -0.71 -8.15 5.06 -53.02 -0.27 -8.42 16 10 C 0.12 1.49 4.30 -67.11 -0.29 1.20 16 11 H 0.10 1.33 7.50 -51.93 -0.39 0.94 16 12 C -0.14 -2.11 7.45 -25.77 -0.19 -2.30 16 13 C -0.11 -1.75 3.65 -89.66 -0.33 -2.08 16 14 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 15 C 0.16 3.26 6.10 -4.04 -0.02 3.23 16 16 N -0.73 -18.75 5.60 -59.91 -0.34 -19.09 16 17 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 18 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 21 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C -0.14 -1.67 7.38 -25.91 -0.19 -1.86 16 26 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 27 H 0.11 0.84 5.69 -52.49 -0.30 0.55 16 28 H 0.12 1.06 7.99 -52.49 -0.42 0.64 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.52 6.23 -51.93 -0.32 0.20 16 31 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 32 H 0.07 0.54 6.99 -51.93 -0.36 0.17 16 33 H 0.07 0.80 7.73 -51.93 -0.40 0.39 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.89 6.11 -51.93 -0.32 0.57 16 36 H 0.05 0.43 6.06 -51.93 -0.31 0.12 16 37 H 0.40 3.89 7.94 -40.82 -0.32 3.56 16 38 H 0.09 1.40 7.90 -51.93 -0.41 0.99 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 42 H 0.38 10.31 7.67 -40.82 -0.31 10.00 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -32.45 356.49 -7.85 -40.31 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -7.60 Total: 9.69 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -0.80 Total: -9.23 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.12 Total: -55.34 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.45 -7.85 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725364701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.648 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds