Wall clock time and date at job start Tue Mar 31 2020 02:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50698 * 119.99829 * 2 1 4 4 C 1.52998 * 109.47203 * 244.63287 * 3 2 1 5 5 C 1.52995 * 109.47399 * 4.63499 * 3 2 1 6 6 C 1.53002 * 109.47325 * 185.61850 * 5 3 2 7 7 C 1.50705 * 109.46976 * 124.63711 * 3 2 1 8 8 O 1.21278 * 119.99566 * 239.99628 * 7 3 2 9 9 N 1.34777 * 120.00145 * 59.99926 * 7 3 2 10 10 C 1.46496 * 119.99801 * 180.02562 * 9 7 3 11 11 H 1.08992 * 112.85200 * 334.66183 * 10 9 7 12 12 C 1.53785 * 113.61784 * 105.86405 * 10 9 7 13 13 C 1.54052 * 86.98657 * 89.15428 * 12 10 9 14 14 H 1.08992 * 113.69379 * 270.87504 * 13 12 10 15 15 C 1.53003 * 113.61632 * 139.97874 * 13 12 10 16 16 N 1.46494 * 109.46966 * 87.50548 * 15 13 12 17 17 C 1.36936 * 120.00220 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99986 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00227 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00121 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99909 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47379 * 60.00757 * 21 19 17 23 23 H 1.48501 * 109.46942 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47408 * 300.00557 * 21 19 17 25 25 C 1.53784 * 87.07595 * 25.43549 * 13 12 10 26 26 H 1.07996 * 119.99632 * 175.15279 * 1 2 3 27 27 H 1.07999 * 119.99858 * 355.16613 * 1 2 3 28 28 H 1.07996 * 119.99936 * 179.71905 * 2 1 3 29 29 H 1.09005 * 109.46936 * 59.99735 * 4 3 2 30 30 H 1.08997 * 109.47766 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47193 * 300.00742 * 4 3 2 32 32 H 1.09002 * 109.47065 * 305.62054 * 5 3 2 33 33 H 1.09003 * 109.47335 * 65.61929 * 5 3 2 34 34 H 1.08998 * 109.46943 * 175.23257 * 6 5 3 35 35 H 1.08999 * 109.47247 * 295.23886 * 6 5 3 36 36 H 1.09001 * 109.46871 * 55.23184 * 6 5 3 37 37 H 0.97000 * 119.99572 * 359.97438 * 9 7 3 38 38 H 1.08990 * 113.61571 * 203.66507 * 12 10 9 39 39 H 1.09000 * 113.60874 * 334.56599 * 12 10 9 40 40 H 1.08999 * 109.47137 * 207.50791 * 15 13 12 41 41 H 1.09002 * 109.46726 * 327.50865 * 15 13 12 42 42 H 0.97005 * 120.00548 * 0.02562 * 16 15 13 43 43 H 0.96992 * 119.99955 * 179.97438 * 20 19 17 44 44 H 1.08994 * 113.61581 * 220.01998 * 25 13 12 45 45 H 1.09002 * 113.61922 * 89.11335 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.8537 1.4378 -1.3034 5 6 1.0734 2.4656 0.1166 6 6 1.8233 3.7919 -0.0240 7 6 3.0141 1.3364 1.1691 8 8 2.9098 2.2017 2.0123 9 7 3.9800 0.4027 1.2773 10 6 4.9036 0.4328 2.4141 11 1 5.0173 1.4293 2.8408 12 6 4.6268 -0.6582 3.4619 13 6 5.5717 -1.5640 2.6495 14 1 5.0684 -2.1330 1.8680 15 6 6.4883 -2.4287 3.5174 16 7 5.8052 -3.6807 3.8522 17 6 6.4350 -4.6186 4.6259 18 1 7.4353 -4.4353 4.9897 19 6 5.7875 -5.8047 4.9436 20 7 4.5683 -6.0280 4.5008 21 14 6.6465 -7.0839 5.9996 22 1 6.9801 -6.4925 7.3203 23 1 5.7486 -8.2509 6.1920 24 1 7.8941 -7.5255 5.3257 25 6 6.2406 -0.2762 2.1404 26 1 -0.5399 -0.9320 -0.0790 27 1 -0.5400 0.9320 0.0788 28 1 1.8500 -0.9353 0.0046 29 1 2.1662 1.4151 -2.1490 30 1 3.3984 2.3820 -1.3037 31 1 3.5591 0.6110 -1.3865 32 1 0.3255 2.3857 -0.6723 33 1 0.5817 2.4276 1.0886 34 1 1.1086 4.6149 -0.0259 35 1 2.5119 3.9104 0.8126 36 1 2.3836 3.7951 -0.9590 37 1 4.0632 -0.2896 0.6030 38 1 5.0026 -0.4147 4.4556 39 1 3.5923 -1.0015 3.4719 40 1 7.4045 -2.6499 2.9700 41 1 6.7331 -1.8920 4.4340 42 1 4.9069 -3.8456 3.5253 43 1 4.1161 -6.8569 4.7225 44 1 6.5081 -0.3112 1.0844 45 1 7.0569 0.0717 2.7735 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725364701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:02 Heat of formation + Delta-G solvation = -16.208721 kcal Electronic energy + Delta-G solvation = -22232.002522 eV Core-core repulsion = 19056.777023 eV Total energy + Delta-G solvation = -3175.225499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67207 -39.97428 -37.48360 -36.34067 -34.48152 -32.86558 -32.69946 -30.29983 -28.46448 -26.63863 -26.20327 -25.21947 -23.80415 -22.81126 -22.12529 -20.30341 -19.76563 -19.05668 -17.75303 -17.13631 -16.72356 -16.52100 -16.04619 -15.78043 -15.45677 -15.31530 -15.20299 -15.02347 -14.44990 -14.27586 -13.64127 -13.55788 -13.40135 -13.20120 -13.09502 -12.91087 -12.80603 -12.68660 -12.56127 -12.23739 -12.20840 -11.92243 -11.73915 -11.64021 -11.46626 -11.35429 -11.14660 -10.90246 -10.83347 -10.16121 -9.98708 -8.98357 -7.95292 -5.23693 1.22112 1.46389 1.49619 1.55730 1.70027 2.21015 2.55905 3.37424 3.56700 3.58717 3.60131 3.74242 3.89413 3.93636 3.98766 4.09429 4.32977 4.39842 4.47301 4.56101 4.61523 4.72116 4.75298 4.84094 4.86552 4.88684 4.91163 4.92498 4.98122 5.08243 5.12057 5.14891 5.18252 5.27311 5.36550 5.38893 5.47760 5.50910 5.67683 5.70673 5.78215 6.27390 6.55955 7.26064 7.33257 8.11237 8.33696 9.28163 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027011 B = 0.003250 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.346749 B = 8612.087721 C = 9195.063315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.166 4.166 3 C -0.045 4.045 4 C -0.136 4.136 5 C -0.100 4.100 6 C -0.159 4.159 7 C 0.524 3.476 8 O -0.573 6.573 9 N -0.700 5.700 10 C 0.126 3.874 11 H 0.092 0.908 12 C -0.144 4.144 13 C -0.110 4.110 14 H 0.085 0.915 15 C 0.160 3.840 16 N -0.745 5.745 17 C -0.248 4.248 18 H 0.075 0.925 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.974 3.026 22 H -0.279 1.279 23 H -0.295 1.295 24 H -0.276 1.276 25 C -0.115 4.115 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.411 0.589 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.022 0.978 41 H 0.019 0.981 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.093 0.907 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.457 17.807 -14.793 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.184 4.184 3 C -0.048 4.048 4 C -0.194 4.194 5 C -0.138 4.138 6 C -0.216 4.216 7 C 0.312 3.688 8 O -0.453 6.453 9 N -0.350 5.350 10 C 0.020 3.980 11 H 0.110 0.890 12 C -0.182 4.182 13 C -0.128 4.128 14 H 0.103 0.897 15 C 0.034 3.966 16 N -0.388 5.388 17 C -0.380 4.380 18 H 0.092 0.908 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.202 1.202 25 C -0.154 4.154 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.135 0.865 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.247 0.753 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.040 0.960 41 H 0.037 0.963 42 H 0.204 0.796 43 H 0.060 0.940 44 H 0.111 0.889 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.363 18.370 -14.096 23.562 hybrid contribution -0.087 -1.513 0.675 1.659 sum -4.450 16.856 -13.421 22.001 Atomic orbital electron populations 1.24232 0.95888 1.03301 0.98100 1.22819 0.96591 0.96468 1.02550 1.19956 0.94897 0.95780 0.94195 1.21906 1.00219 1.03078 0.94150 1.21468 0.97204 0.93089 1.02044 1.21955 1.00845 0.96659 1.02149 1.20988 0.80738 0.80142 0.86919 1.90640 1.72718 1.38064 1.43838 1.45663 1.31892 1.31153 1.26313 1.21741 0.90279 0.98728 0.87214 0.88983 1.23456 0.99233 0.96893 0.98655 1.22714 0.97129 0.94980 0.98004 0.89671 1.20824 0.94350 0.85912 0.95532 1.42575 1.17489 1.17057 1.61653 1.19635 0.98584 0.96709 1.23052 0.90751 1.25577 0.97424 1.00622 1.03251 1.69808 1.14005 1.26535 1.51723 0.85209 0.77395 0.78351 0.78800 1.20517 1.22094 1.20216 1.23212 0.95759 0.93226 1.03163 0.87215 0.86990 0.86483 0.89703 0.91279 0.91063 0.89069 0.93094 0.92133 0.93501 0.91259 0.75255 0.89899 0.93370 0.95980 0.96337 0.79568 0.94020 0.88866 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 13.71 67.77 0.93 -1.96 16 2 C -0.17 -2.92 8.54 25.64 0.22 -2.70 16 3 C -0.05 -0.81 0.62 -53.68 -0.03 -0.84 16 4 C -0.14 -1.73 7.85 71.98 0.57 -1.17 16 5 C -0.10 -1.79 3.34 30.59 0.10 -1.69 16 6 C -0.16 -2.85 9.25 71.98 0.67 -2.19 16 7 C 0.52 12.87 6.21 87.66 0.54 13.41 16 8 O -0.57 -18.42 13.63 -3.02 -0.04 -18.46 16 9 N -0.70 -15.36 5.06 -440.03 -2.22 -17.58 16 10 C 0.13 3.11 4.30 45.52 0.20 3.31 16 11 H 0.09 2.44 7.50 -2.39 -0.02 2.43 16 12 C -0.14 -4.38 7.45 31.21 0.23 -4.15 16 13 C -0.11 -3.31 3.65 -10.17 -0.04 -3.35 16 14 H 0.09 2.62 8.14 -2.39 -0.02 2.61 16 15 C 0.16 6.31 6.10 86.38 0.53 6.84 16 16 N -0.75 -38.41 5.60 -343.45 -1.92 -40.34 16 17 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 18 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 19 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 20 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 21 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 25 C -0.12 -2.52 7.38 31.12 0.23 -2.29 16 26 H 0.11 1.59 8.06 -2.91 -0.02 1.57 16 27 H 0.11 1.63 5.69 -2.91 -0.02 1.61 16 28 H 0.12 2.00 7.99 -2.91 -0.02 1.98 16 29 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.07 0.89 6.23 -2.39 -0.01 0.87 16 31 H 0.07 0.78 7.56 -2.39 -0.02 0.76 16 32 H 0.09 1.22 6.99 -2.39 -0.02 1.20 16 33 H 0.05 1.12 7.73 -2.39 -0.02 1.10 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.05 1.12 6.11 -2.39 -0.01 1.10 16 36 H 0.07 1.00 6.06 -2.39 -0.01 0.98 16 37 H 0.41 7.26 7.94 -92.71 -0.74 6.52 16 38 H 0.08 2.62 7.90 -2.39 -0.02 2.60 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.02 0.75 7.85 -2.39 -0.02 0.73 16 42 H 0.37 20.43 7.67 -92.70 -0.71 19.72 16 43 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 44 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.11 2.14 8.10 -2.39 -0.02 2.12 16 Total: -1.00 -70.15 356.49 3.10 -67.05 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: -0.47 Total: 34.52 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 5.45 Total: -14.02 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -3.87 Total: -117.67 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.04 Total: -18.46 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -70.15 3.10 -67.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725364701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.845 kcal (2) G-P(sol) polarization free energy of solvation -70.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds