Wall clock time and date at job start Tue Mar 31 2020 02:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47050 * 2 1 4 4 C 1.50706 * 109.46974 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99789 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99994 * 179.97438 * 4 3 2 7 7 C 1.46495 * 119.99955 * 179.97438 * 6 4 3 8 8 C 1.53004 * 115.56162 * 180.11212 * 7 6 4 9 9 C 1.53040 * 109.45858 * 159.38389 * 8 7 6 10 10 C 1.53195 * 109.31098 * 178.61324 * 9 8 7 11 11 N 1.46928 * 108.77462 * 54.63711 * 10 9 8 12 12 C 1.36937 * 120.63128 * 126.36652 * 11 10 9 13 13 H 1.08003 * 119.99915 * 207.69195 * 12 11 10 14 14 C 1.38809 * 119.99886 * 27.70151 * 12 11 10 15 15 N 1.31612 * 120.00390 * 17.35074 * 14 12 11 16 16 Si 1.86799 * 119.99707 * 197.34696 * 14 12 11 17 17 H 1.48502 * 109.47154 * 90.00221 * 16 14 12 18 18 H 1.48503 * 109.47473 * 209.99674 * 16 14 12 19 19 H 1.48494 * 109.47712 * 329.99992 * 16 14 12 20 20 C 1.46925 * 118.73406 * 306.38997 * 11 10 9 21 21 C 1.53038 * 109.46017 * 39.31484 * 8 7 6 22 22 C 1.53002 * 117.50079 * 34.42676 * 7 6 4 23 23 C 1.53000 * 60.03305 * 252.49446 * 22 7 6 24 24 H 1.09001 * 109.47529 * 300.00482 * 1 2 3 25 25 H 1.08999 * 109.47286 * 59.99758 * 1 2 3 26 26 H 1.09001 * 109.47712 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47301 * 239.99989 * 2 1 3 28 28 H 1.09004 * 109.46852 * 120.00076 * 2 1 3 29 29 H 1.09003 * 109.47397 * 60.00184 * 3 2 1 30 30 H 1.08996 * 109.47174 * 299.99487 * 3 2 1 31 31 H 0.97004 * 119.99959 * 0.02562 * 6 4 3 32 32 H 1.09002 * 109.46230 * 279.33929 * 8 7 6 33 33 H 1.09007 * 109.49990 * 298.56433 * 9 8 7 34 34 H 1.09004 * 109.50103 * 58.66315 * 9 8 7 35 35 H 1.08998 * 109.58801 * 294.84914 * 10 9 8 36 36 H 1.09005 * 109.58461 * 174.41716 * 10 9 8 37 37 H 0.96999 * 120.00485 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.58856 * 293.81725 * 20 11 10 39 39 H 1.09010 * 109.58503 * 173.39986 * 20 11 10 40 40 H 1.08997 * 109.49700 * 301.33720 * 21 8 7 41 41 H 1.09004 * 109.49935 * 61.40305 * 21 8 7 42 42 H 1.09004 * 117.49318 * 359.97438 * 22 7 6 43 43 H 1.08998 * 117.50030 * 144.99155 * 22 7 6 44 44 H 1.09001 * 117.49887 * 107.49987 * 23 22 7 45 45 H 1.08993 * 117.49908 * 252.52029 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1533 0.3921 0.0006 6 7 4.2209 2.6096 0.0002 7 6 5.6858 2.6096 0.0014 8 6 6.3460 3.9899 0.0035 9 6 7.7840 3.8664 0.5126 10 6 8.4528 5.2443 0.4806 11 7 7.6231 6.1904 1.2393 12 6 8.1643 6.9363 2.2521 13 1 7.5420 7.2690 3.0697 14 6 9.5127 7.2650 2.2279 15 7 10.1932 7.1700 1.1054 16 14 10.3614 7.8424 3.7886 17 1 10.9149 6.6705 4.5136 18 1 11.4641 8.7729 3.4373 19 1 9.3802 8.5426 4.6558 20 6 6.2018 6.3204 0.8908 21 6 5.5582 4.9305 0.9182 22 6 6.3929 1.4895 -0.7644 23 6 6.3924 1.4872 0.7656 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7358 3.4497 -0.0001 32 1 6.3531 4.3906 -1.0101 33 1 7.7768 3.4892 1.5353 34 1 8.3381 3.1782 -0.1257 35 1 8.5424 5.5831 -0.5515 36 1 9.4420 5.1809 0.9340 37 1 11.1356 7.3993 1.0885 38 1 6.1079 6.7470 -0.1079 39 1 5.7057 6.9671 1.6147 40 1 4.5281 4.9996 0.5686 41 1 5.5714 4.5429 1.9369 42 1 5.7680 0.7524 -1.2687 43 1 7.3281 1.7361 -1.2670 44 1 5.7673 0.7487 1.2676 45 1 7.3272 1.7325 1.2696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725792027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:27 Heat of formation + Delta-G solvation = -2.593187 kcal Electronic energy + Delta-G solvation = -22772.802437 eV Core-core repulsion = 19598.167352 eV Total energy + Delta-G solvation = -3174.635086 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.49838 -38.24451 -36.03249 -34.47172 -33.08664 -32.67283 -30.16181 -29.77286 -28.06350 -25.57183 -23.33500 -22.33420 -22.16356 -21.85639 -20.36635 -19.79644 -18.64351 -17.49958 -16.64108 -15.96317 -15.68143 -14.99173 -14.50805 -14.22812 -14.02714 -13.84428 -13.53959 -13.33870 -13.28457 -12.94549 -12.52585 -12.40369 -12.34850 -11.95716 -11.42811 -11.41498 -11.22641 -11.07767 -11.03048 -10.90801 -10.73550 -10.71759 -10.21864 -10.10285 -10.06602 -9.94928 -9.63596 -9.47028 -9.33671 -8.47111 -8.40887 -6.68054 -5.79030 -3.21143 2.59100 3.12091 3.37973 3.45086 3.45859 4.18613 4.49336 4.55387 4.66131 4.77368 4.94934 5.06036 5.24266 5.25153 5.29321 5.37594 5.38133 5.45868 5.49292 5.58949 5.70222 5.78316 5.79601 5.91599 6.01295 6.02384 6.08805 6.12770 6.27629 6.31135 6.40572 6.58090 6.59565 6.67966 6.71876 6.79334 6.81663 6.97176 7.37305 7.56603 7.65938 7.79477 8.25533 8.44880 9.21279 9.84861 10.41327 11.29438 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034057 B = 0.003562 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.944878 B = 7858.012245 C = 8174.615586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.142 4.142 4 C 0.508 3.492 5 O -0.538 6.538 6 N -0.694 5.694 7 C 0.102 3.898 8 C -0.041 4.041 9 C -0.133 4.133 10 C 0.171 3.829 11 N -0.592 5.592 12 C -0.252 4.252 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.287 1.287 18 H -0.291 1.291 19 H -0.279 1.279 20 C 0.146 3.854 21 C -0.125 4.125 22 C -0.179 4.179 23 C -0.178 4.178 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.403 0.597 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.017 0.983 36 H 0.089 0.911 37 H 0.254 0.746 38 H 0.017 0.983 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.568 -10.540 -3.645 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.182 4.182 4 C 0.295 3.705 5 O -0.416 6.416 6 N -0.343 5.343 7 C 0.015 3.985 8 C -0.060 4.060 9 C -0.173 4.173 10 C 0.045 3.955 11 N -0.315 5.315 12 C -0.382 4.382 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.547 5.547 16 Si 0.732 3.268 17 H -0.214 1.214 18 H -0.218 1.218 19 H -0.205 1.205 20 C 0.019 3.981 21 C -0.164 4.164 22 C -0.217 4.217 23 C -0.216 4.216 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.240 0.760 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.119 0.881 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.982 -11.208 -3.668 19.066 hybrid contribution 0.223 0.733 0.716 1.048 sum -14.759 -10.475 -2.952 18.338 Atomic orbital electron populations 1.21797 0.95598 1.01875 1.01764 1.21256 0.95104 0.94724 1.03511 1.21740 0.92008 1.00149 1.04297 1.20757 0.90177 0.83673 0.75918 1.90657 1.70029 1.31585 1.49336 1.45489 1.05987 1.08655 1.74200 1.21007 0.78719 0.92820 1.05978 1.20663 0.95869 0.89698 0.99779 1.22345 0.93692 1.01005 1.00231 1.20798 0.95515 0.84428 0.94759 1.44051 1.03984 1.44300 1.39123 1.19194 0.93170 1.27490 0.98311 0.91709 1.25026 0.98357 0.99646 0.96637 1.70028 1.08627 1.52137 1.23937 0.86298 0.79272 0.78135 0.83118 1.21443 1.21786 1.20464 1.20888 0.86709 0.92867 0.97629 1.22025 0.96792 0.98175 0.99408 1.23356 1.01817 1.01220 0.95292 1.23506 1.02379 1.00839 0.94864 0.92682 0.92728 0.92481 0.91314 0.91272 0.89000 0.89064 0.76045 0.91132 0.92058 0.92975 0.96459 0.89321 0.93631 0.96527 0.92806 0.93750 0.91994 0.87986 0.88950 0.88091 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.15 0.37 -0.65 16 2 C -0.11 -0.95 5.22 -26.73 -0.14 -1.09 16 3 C -0.14 -1.21 5.70 -27.88 -0.16 -1.37 16 4 C 0.51 6.32 7.53 -10.98 -0.08 6.24 16 5 O -0.54 -8.43 11.46 5.55 0.06 -8.37 16 6 N -0.69 -8.59 5.39 -47.57 -0.26 -8.85 16 7 C 0.10 1.50 2.99 -131.78 -0.39 1.11 16 8 C -0.04 -0.66 2.45 -90.58 -0.22 -0.88 16 9 C -0.13 -2.48 4.00 -26.61 -0.11 -2.59 16 10 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 11 N -0.59 -14.53 2.99 -172.31 -0.52 -15.04 16 12 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 13 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 14 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 15 N -0.90 -26.04 11.19 55.49 0.62 -25.42 16 16 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.15 2.93 6.51 -3.71 -0.02 2.91 16 21 C -0.12 -2.02 5.02 -26.61 -0.13 -2.16 16 22 C -0.18 -2.68 9.05 -26.73 -0.24 -2.93 16 23 C -0.18 -2.78 8.84 -26.69 -0.24 -3.01 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 28 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.40 4.12 6.81 -40.82 -0.28 3.84 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.19 6.84 -51.93 -0.36 0.83 16 34 H 0.05 0.90 6.87 -51.93 -0.36 0.54 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 37 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 1.06 7.93 -51.92 -0.41 0.65 16 40 H 0.04 0.58 6.41 -51.93 -0.33 0.24 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.10 1.62 6.38 -51.93 -0.33 1.29 16 43 H 0.09 1.33 7.27 -51.93 -0.38 0.96 16 44 H 0.10 1.68 6.37 -51.93 -0.33 1.35 16 45 H 0.10 1.59 5.91 -51.93 -0.31 1.28 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -30.43 341.50 -9.18 -39.61 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.59 Total: 3.81 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.62 Total: -7.48 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.15 Total: -49.32 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.06 Total: -8.37 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.43 -9.18 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725792027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.016 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds