Wall clock time and date at job start Tue Mar 31 2020 02:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47050 * 2 1 4 4 C 1.50706 * 109.46974 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99789 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99994 * 179.97438 * 4 3 2 7 7 C 1.46495 * 119.99955 * 179.97438 * 6 4 3 8 8 C 1.53004 * 115.56162 * 180.11212 * 7 6 4 9 9 C 1.53040 * 109.45858 * 159.38389 * 8 7 6 10 10 C 1.53195 * 109.31098 * 178.61324 * 9 8 7 11 11 N 1.46928 * 108.77462 * 54.63711 * 10 9 8 12 12 C 1.36937 * 120.63128 * 126.36652 * 11 10 9 13 13 H 1.08003 * 119.99915 * 207.69195 * 12 11 10 14 14 C 1.38809 * 119.99886 * 27.70151 * 12 11 10 15 15 N 1.31612 * 120.00390 * 17.35074 * 14 12 11 16 16 Si 1.86799 * 119.99707 * 197.34696 * 14 12 11 17 17 H 1.48502 * 109.47154 * 90.00221 * 16 14 12 18 18 H 1.48503 * 109.47473 * 209.99674 * 16 14 12 19 19 H 1.48494 * 109.47712 * 329.99992 * 16 14 12 20 20 C 1.46925 * 118.73406 * 306.38997 * 11 10 9 21 21 C 1.53038 * 109.46017 * 39.31484 * 8 7 6 22 22 C 1.53002 * 117.50079 * 34.42676 * 7 6 4 23 23 C 1.53000 * 60.03305 * 252.49446 * 22 7 6 24 24 H 1.09001 * 109.47529 * 300.00482 * 1 2 3 25 25 H 1.08999 * 109.47286 * 59.99758 * 1 2 3 26 26 H 1.09001 * 109.47712 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47301 * 239.99989 * 2 1 3 28 28 H 1.09004 * 109.46852 * 120.00076 * 2 1 3 29 29 H 1.09003 * 109.47397 * 60.00184 * 3 2 1 30 30 H 1.08996 * 109.47174 * 299.99487 * 3 2 1 31 31 H 0.97004 * 119.99959 * 0.02562 * 6 4 3 32 32 H 1.09002 * 109.46230 * 279.33929 * 8 7 6 33 33 H 1.09007 * 109.49990 * 298.56433 * 9 8 7 34 34 H 1.09004 * 109.50103 * 58.66315 * 9 8 7 35 35 H 1.08998 * 109.58801 * 294.84914 * 10 9 8 36 36 H 1.09005 * 109.58461 * 174.41716 * 10 9 8 37 37 H 0.96999 * 120.00485 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.58856 * 293.81725 * 20 11 10 39 39 H 1.09010 * 109.58503 * 173.39986 * 20 11 10 40 40 H 1.08997 * 109.49700 * 301.33720 * 21 8 7 41 41 H 1.09004 * 109.49935 * 61.40305 * 21 8 7 42 42 H 1.09004 * 117.49318 * 359.97438 * 22 7 6 43 43 H 1.08998 * 117.50030 * 144.99155 * 22 7 6 44 44 H 1.09001 * 117.49887 * 107.49987 * 23 22 7 45 45 H 1.08993 * 117.49908 * 252.52029 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1533 0.3921 0.0006 6 7 4.2209 2.6096 0.0002 7 6 5.6858 2.6096 0.0014 8 6 6.3460 3.9899 0.0035 9 6 7.7840 3.8664 0.5126 10 6 8.4528 5.2443 0.4806 11 7 7.6231 6.1904 1.2393 12 6 8.1643 6.9363 2.2521 13 1 7.5420 7.2690 3.0697 14 6 9.5127 7.2650 2.2279 15 7 10.1932 7.1700 1.1054 16 14 10.3614 7.8424 3.7886 17 1 10.9149 6.6705 4.5136 18 1 11.4641 8.7729 3.4373 19 1 9.3802 8.5426 4.6558 20 6 6.2018 6.3204 0.8908 21 6 5.5582 4.9305 0.9182 22 6 6.3929 1.4895 -0.7644 23 6 6.3924 1.4872 0.7656 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7358 3.4497 -0.0001 32 1 6.3531 4.3906 -1.0101 33 1 7.7768 3.4892 1.5353 34 1 8.3381 3.1782 -0.1257 35 1 8.5424 5.5831 -0.5515 36 1 9.4420 5.1809 0.9340 37 1 11.1356 7.3993 1.0885 38 1 6.1079 6.7470 -0.1079 39 1 5.7057 6.9671 1.6147 40 1 4.5281 4.9996 0.5686 41 1 5.5714 4.5429 1.9369 42 1 5.7680 0.7524 -1.2687 43 1 7.3281 1.7361 -1.2670 44 1 5.7673 0.7487 1.2676 45 1 7.3272 1.7325 1.2696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725792027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:26 Heat of formation + Delta-G solvation = -20.294185 kcal Electronic energy + Delta-G solvation = -22773.570010 eV Core-core repulsion = 19598.167352 eV Total energy + Delta-G solvation = -3175.402658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61598 -39.57370 -37.50877 -35.25352 -34.52655 -34.08999 -31.91769 -31.41167 -28.78177 -27.36974 -24.80410 -23.82085 -23.43779 -22.94823 -21.50545 -21.04465 -20.05843 -18.73133 -18.36797 -16.95084 -16.73325 -16.65560 -15.87230 -15.44217 -15.32759 -15.19909 -15.03685 -14.77743 -14.48503 -14.13707 -14.01735 -13.85488 -13.12913 -12.99088 -12.95835 -12.63925 -12.57412 -12.49533 -12.36470 -12.30597 -12.01402 -11.93399 -11.77239 -11.68537 -11.58078 -11.44105 -11.17839 -10.90270 -10.57755 -10.49191 -9.54673 -8.66884 -7.86376 -5.30793 1.46624 1.48689 1.56713 1.63601 2.13545 2.51951 2.97292 3.27910 3.61868 3.66018 3.75003 3.91045 4.01536 4.03081 4.14506 4.26150 4.29435 4.44748 4.55519 4.62690 4.70006 4.73035 4.73816 4.79023 4.84181 4.89224 4.93772 5.03723 5.07108 5.14994 5.23999 5.25792 5.28619 5.29929 5.34023 5.42239 5.47618 5.54989 5.63725 5.67722 5.78958 6.40657 6.62643 7.16536 7.31718 7.88954 8.39604 9.19840 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034057 B = 0.003562 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.944878 B = 7858.012245 C = 8174.615586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.133 4.133 4 C 0.503 3.497 5 O -0.574 6.574 6 N -0.687 5.687 7 C 0.113 3.887 8 C -0.033 4.033 9 C -0.119 4.119 10 C 0.178 3.822 11 N -0.611 5.611 12 C -0.260 4.260 13 H 0.067 0.933 14 C -0.051 4.051 15 N -0.935 5.935 16 Si 0.964 3.036 17 H -0.288 1.288 18 H -0.296 1.296 19 H -0.268 1.268 20 C 0.140 3.860 21 C -0.111 4.111 22 C -0.174 4.174 23 C -0.184 4.184 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.417 0.583 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.065 0.935 35 H -0.003 1.003 36 H 0.052 0.948 37 H 0.249 0.751 38 H 0.018 0.982 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.081 -10.559 -3.500 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.173 4.173 4 C 0.292 3.708 5 O -0.454 6.454 6 N -0.338 5.338 7 C 0.025 3.975 8 C -0.052 4.052 9 C -0.158 4.158 10 C 0.052 3.948 11 N -0.335 5.335 12 C -0.390 4.390 13 H 0.084 0.916 14 C -0.247 4.247 15 N -0.581 5.581 16 Si 0.792 3.208 17 H -0.215 1.215 18 H -0.222 1.222 19 H -0.192 1.192 20 C 0.015 3.985 21 C -0.150 4.150 22 C -0.212 4.212 23 C -0.222 4.222 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.255 0.745 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.016 0.984 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.551 -11.217 -3.520 21.124 hybrid contribution 0.974 0.729 0.642 1.375 sum -16.577 -10.488 -2.878 19.826 Atomic orbital electron populations 1.21757 0.93703 1.02328 1.02727 1.21233 0.96666 0.94758 1.01937 1.21781 0.88640 1.00329 1.06516 1.21503 0.91779 0.82885 0.74659 1.90651 1.71100 1.32862 1.50801 1.45416 1.04744 1.09569 1.74107 1.20703 0.80249 0.91412 1.05117 1.20507 0.94243 0.90684 0.99758 1.22110 0.95409 0.97999 1.00299 1.20580 0.94510 0.86798 0.92939 1.44328 1.05819 1.44430 1.38900 1.19522 0.93542 1.26939 0.99040 0.91579 1.25754 0.99098 1.00616 0.99214 1.70175 1.08454 1.53742 1.25758 0.85318 0.78107 0.77458 0.79894 1.21454 1.22241 1.19244 1.21080 0.84484 0.95433 0.97547 1.21871 0.98684 0.95312 0.99139 1.23310 1.02002 1.01165 0.94767 1.23413 1.02261 1.01316 0.95211 0.91778 0.91626 0.92407 0.92837 0.93060 0.86789 0.86524 0.74482 0.90752 0.92860 0.91690 0.98443 0.92982 0.94178 0.96399 0.92596 0.89418 0.92869 0.88682 0.88456 0.89138 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.86 16 2 C -0.11 -1.70 5.22 30.59 0.16 -1.54 16 3 C -0.13 -1.83 5.70 29.85 0.17 -1.66 16 4 C 0.50 11.36 7.53 87.66 0.66 12.02 16 5 O -0.57 -17.43 11.46 -3.04 -0.03 -17.47 16 6 N -0.69 -14.95 5.39 -422.80 -2.28 -17.23 16 7 C 0.11 3.11 2.99 3.63 0.01 3.12 16 8 C -0.03 -1.00 2.45 -10.77 -0.03 -1.02 16 9 C -0.12 -4.38 4.00 30.67 0.12 -4.26 16 10 C 0.18 8.46 5.31 86.36 0.46 8.92 16 11 N -0.61 -30.09 2.99 -699.07 -2.09 -32.18 16 12 C -0.26 -14.21 9.58 84.03 0.81 -13.40 16 13 H 0.07 3.52 7.89 -2.91 -0.02 3.49 16 14 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 15 N -0.93 -55.40 11.19 21.65 0.24 -55.15 16 16 Si 0.96 44.96 29.59 68.60 2.03 46.99 16 17 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 18 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C 0.14 5.42 6.51 86.36 0.56 5.98 16 21 C -0.11 -3.31 5.02 30.67 0.15 -3.15 16 22 C -0.17 -5.02 9.05 30.59 0.28 -4.75 16 23 C -0.18 -5.58 8.84 30.62 0.27 -5.31 16 24 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 28 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 29 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.42 6.71 6.81 -92.71 -0.63 6.08 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 33 H 0.05 2.05 6.84 -2.38 -0.02 2.04 16 34 H 0.06 2.20 6.87 -2.38 -0.02 2.19 16 35 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.05 2.85 6.04 -2.38 -0.01 2.84 16 37 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 38 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.06 2.12 7.93 -2.38 -0.02 2.10 16 40 H 0.09 1.88 6.41 -2.39 -0.02 1.86 16 41 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.09 2.93 6.38 -2.38 -0.02 2.91 16 43 H 0.10 2.69 7.27 -2.39 -0.02 2.67 16 44 H 0.09 2.98 6.37 -2.39 -0.02 2.96 16 45 H 0.10 2.97 5.91 -2.39 -0.01 2.96 16 Total: -1.00 -67.35 341.50 2.96 -64.39 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.34 Total: 19.02 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 4.76 Total: -8.37 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -4.13 Total: -104.56 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.03 Total: -17.47 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -67.35 2.96 -64.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725792027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.094 kcal (2) G-P(sol) polarization free energy of solvation -67.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds