Wall clock time and date at job start Tue Mar 31 2020 01:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47084 * 2 1 4 4 C 1.53005 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46860 * 304.99587 * 4 3 2 6 6 C 1.52995 * 109.47137 * 64.99677 * 4 3 2 7 7 C 1.52997 * 109.47066 * 184.99565 * 4 3 2 8 8 C 1.50703 * 109.47082 * 174.99907 * 7 4 3 9 9 O 1.21279 * 119.99870 * 359.97438 * 8 7 4 10 10 N 1.34774 * 120.00126 * 180.02562 * 8 7 4 11 11 C 1.47876 * 126.94224 * 359.97208 * 10 8 7 12 12 C 1.56022 * 105.10184 * 182.02341 * 11 10 8 13 13 H 1.08994 * 116.24690 * 158.83351 * 12 11 10 14 14 C 1.57080 * 99.60578 * 32.80717 * 12 11 10 15 15 C 1.49289 * 126.94840 * 179.97438 * 10 8 7 16 16 H 1.09003 * 116.14904 * 16.68483 * 15 10 8 17 17 C 1.56014 * 104.09626 * 246.67847 * 15 10 8 18 18 N 1.47872 * 105.10366 * 288.76424 * 17 15 10 19 19 C 1.36929 * 126.94329 * 182.00092 * 18 17 15 20 20 H 1.08003 * 120.00203 * 180.02562 * 19 18 17 21 21 C 1.38815 * 120.00340 * 359.97438 * 19 18 17 22 22 N 1.31614 * 119.99693 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00097 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47574 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47397 * 120.00283 * 23 21 19 26 26 H 1.48506 * 109.47382 * 240.00266 * 23 21 19 27 27 H 1.09004 * 109.46650 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47442 * 299.99793 * 1 2 3 29 29 H 1.09000 * 109.46899 * 60.00691 * 1 2 3 30 30 H 1.08997 * 109.47662 * 239.99465 * 2 1 3 31 31 H 1.09005 * 109.47007 * 119.99761 * 2 1 3 32 32 H 1.08996 * 109.47690 * 59.99629 * 3 2 1 33 33 H 1.09000 * 109.46688 * 299.99438 * 3 2 1 34 34 H 1.09002 * 109.47279 * 179.97438 * 6 4 3 35 35 H 1.09004 * 109.47372 * 300.00331 * 6 4 3 36 36 H 1.08998 * 109.47716 * 60.00065 * 6 4 3 37 37 H 1.09002 * 109.46817 * 54.99990 * 7 4 3 38 38 H 1.09000 * 109.47121 * 294.99780 * 7 4 3 39 39 H 1.08994 * 110.31433 * 300.93105 * 11 10 8 40 40 H 1.09001 * 110.31153 * 63.12225 * 11 10 8 41 41 H 1.09006 * 112.36878 * 191.71614 * 14 12 11 42 42 H 1.09000 * 112.37145 * 64.27655 * 14 12 11 43 43 H 1.09004 * 110.31654 * 47.67346 * 17 15 10 44 44 H 1.08996 * 110.31749 * 169.85564 * 17 15 10 45 45 H 0.97002 * 120.00217 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8533 0.8428 6 6 4.0806 0.8327 -1.3063 7 6 4.0799 2.8796 0.1263 8 6 5.5818 2.8706 0.2504 9 8 6.1848 1.8185 0.2400 10 7 6.2547 4.0318 0.3741 11 6 5.6791 5.3936 0.4053 12 6 6.9063 6.3513 0.5099 13 1 6.7422 7.3813 0.1935 14 6 7.9560 5.5233 -0.3146 15 6 7.7317 4.2033 0.5073 16 1 8.3422 3.3452 0.2259 17 6 7.9208 4.7605 1.9522 18 7 7.4091 6.1470 1.9005 19 6 7.3987 7.0590 2.9218 20 1 6.9947 8.0473 2.7591 21 6 7.9064 6.7130 4.1665 22 7 8.3983 5.5085 4.3649 23 14 7.8915 7.9570 5.5599 24 1 7.2892 9.2277 5.0827 25 1 7.0900 7.4240 6.6908 26 1 9.2828 8.2082 6.0143 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9562 -0.8901 34 1 5.1706 0.8331 -1.3061 35 1 3.7173 -0.1911 -1.3959 36 1 3.7176 1.4219 -2.1485 37 1 3.6448 3.3433 1.0116 38 1 3.7919 3.4460 -0.7594 39 1 5.1226 5.5902 -0.5110 40 1 5.0321 5.5111 1.2746 41 1 8.9686 5.9122 -0.2063 42 1 7.6696 5.4148 -1.3607 43 1 7.3435 4.1704 2.6640 44 1 8.9762 4.7565 2.2243 45 1 8.7534 5.2668 5.2347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732146096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:25 Heat of formation + Delta-G solvation = -4.684682 kcal Electronic energy + Delta-G solvation = -22822.646896 eV Core-core repulsion = 19647.921117 eV Total energy + Delta-G solvation = -3174.725780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09697 -38.34574 -36.42422 -33.60882 -32.68548 -31.53809 -29.24633 -28.57727 -27.43048 -26.60305 -25.18763 -23.51681 -22.14636 -20.63321 -19.83500 -19.69011 -18.31930 -17.13885 -16.26946 -15.89857 -15.41062 -15.14097 -14.70405 -14.11318 -14.06924 -13.64747 -13.54678 -13.24015 -13.01802 -12.38746 -12.16848 -12.06356 -11.85598 -11.64326 -11.59631 -11.49972 -11.28416 -11.04049 -10.96801 -10.86759 -10.80274 -10.65289 -10.58147 -10.52471 -10.42563 -10.22962 -10.05668 -9.64761 -9.23430 -8.70816 -7.94680 -6.93437 -5.77669 -3.12343 3.13191 3.36146 3.41184 3.44373 3.46317 4.40880 4.66352 4.80950 4.84662 5.00300 5.11093 5.18029 5.19654 5.27707 5.37855 5.52242 5.54363 5.56419 5.64237 5.66089 5.68903 5.76635 5.78179 5.83432 5.89721 5.93937 5.96560 6.10043 6.12785 6.18732 6.26554 6.30108 6.41402 6.48867 6.52221 6.57506 6.61010 6.72671 7.42353 7.49739 7.71699 8.08766 8.17693 8.68493 9.09307 9.70219 10.39537 11.34366 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021708 B = 0.004017 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.525146 B = 6969.049875 C = 7576.291489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.075 4.075 5 H 0.077 0.923 6 C -0.152 4.152 7 C -0.131 4.131 8 C 0.527 3.473 9 O -0.554 6.554 10 N -0.608 5.608 11 C 0.085 3.915 12 C 0.140 3.860 13 H 0.106 0.894 14 C -0.152 4.152 15 C 0.097 3.903 16 H 0.112 0.888 17 C 0.176 3.824 18 N -0.597 5.597 19 C -0.231 4.231 20 H 0.081 0.919 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.290 1.290 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.897 -5.064 -11.393 16.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.094 4.094 5 H 0.095 0.905 6 C -0.209 4.209 7 C -0.171 4.171 8 C 0.316 3.684 9 O -0.434 6.434 10 N -0.342 5.342 11 C -0.041 4.041 12 C 0.031 3.969 13 H 0.123 0.877 14 C -0.192 4.192 15 C -0.005 4.005 16 H 0.130 0.870 17 C 0.050 3.950 18 N -0.322 5.322 19 C -0.359 4.359 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.743 3.257 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.563 -5.666 -11.112 16.345 hybrid contribution -0.096 0.687 0.927 1.158 sum -10.659 -4.980 -10.185 15.561 Atomic orbital electron populations 1.21782 0.96194 1.01322 1.01663 1.21571 0.95399 0.97139 1.02230 1.21681 0.94967 0.96762 1.01865 1.20890 0.94130 0.94632 0.99752 0.90458 1.21975 1.03238 0.99786 0.95857 1.21696 0.92696 0.99002 1.03701 1.20207 0.89548 0.82429 0.76211 1.90614 1.70472 1.30201 1.52117 1.49271 1.08439 1.05763 1.70697 1.23273 0.98402 0.82602 0.99825 1.23157 0.90714 0.95943 0.87057 0.87662 1.24172 1.00883 0.96785 0.97368 1.24324 0.80367 0.96695 0.99156 0.87004 1.21896 0.99142 0.84623 0.89295 1.45235 1.70552 1.10794 1.05574 1.19093 1.34948 0.93239 0.88648 0.90107 1.24829 1.00865 0.96911 0.97730 1.69932 1.45535 1.18308 1.22752 0.86042 0.77280 0.80122 0.82249 1.20457 1.21790 1.21736 0.93019 0.92834 0.92911 0.91775 0.92031 0.92017 0.92101 0.90626 0.93044 0.93716 0.89303 0.89594 0.92944 0.91164 0.89872 0.91733 0.93522 0.92725 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.13 -1.18 5.69 -26.73 -0.15 -1.34 16 3 C -0.12 -1.18 4.68 -26.73 -0.13 -1.30 16 4 C -0.08 -0.96 2.04 -90.62 -0.18 -1.14 16 5 H 0.08 1.13 7.95 -51.93 -0.41 0.72 16 6 C -0.15 -1.90 8.69 37.16 0.32 -1.58 16 7 C -0.13 -1.80 4.46 -27.88 -0.12 -1.92 16 8 C 0.53 9.49 7.61 -10.99 -0.08 9.40 16 9 O -0.55 -11.51 14.32 5.56 0.08 -11.43 16 10 N -0.61 -11.19 2.95 -156.76 -0.46 -11.66 16 11 C 0.08 1.42 6.01 -1.67 -0.01 1.41 16 12 C 0.14 2.58 5.52 -62.56 -0.35 2.23 16 13 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 14 C -0.15 -2.59 6.81 -22.29 -0.15 -2.74 16 15 C 0.10 1.90 5.24 -62.54 -0.33 1.57 16 16 H 0.11 2.14 8.06 -51.93 -0.42 1.73 16 17 C 0.18 4.24 4.76 -1.68 -0.01 4.23 16 18 N -0.60 -14.33 3.02 -156.36 -0.47 -14.80 16 19 C -0.23 -6.13 10.37 -15.06 -0.16 -6.29 16 20 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 21 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 22 N -0.92 -26.81 10.56 55.49 0.59 -26.22 16 23 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.59 6.57 -51.93 -0.34 0.25 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.16 5.95 -51.93 -0.31 0.85 16 35 H 0.05 0.58 6.57 -51.93 -0.34 0.24 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 1.30 7.68 -51.93 -0.40 0.90 16 44 H 0.05 1.45 7.46 -51.93 -0.39 1.07 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 349.37 15.07 5.26 5.26 Total: -1.00 -30.59 349.37 -9.17 -39.76 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.07 Total: 1.06 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.07 Total: 1.39 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.35 Total: -52.68 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.59 -9.17 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732146096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.078 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds