Wall clock time and date at job start Tue Mar 31 2020 01:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47084 * 2 1 4 4 C 1.53005 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46860 * 304.99587 * 4 3 2 6 6 C 1.52995 * 109.47137 * 64.99677 * 4 3 2 7 7 C 1.52997 * 109.47066 * 184.99565 * 4 3 2 8 8 C 1.50703 * 109.47082 * 174.99907 * 7 4 3 9 9 O 1.21279 * 119.99870 * 359.97438 * 8 7 4 10 10 N 1.34774 * 120.00126 * 180.02562 * 8 7 4 11 11 C 1.47876 * 126.94224 * 359.97208 * 10 8 7 12 12 C 1.56022 * 105.10184 * 182.02341 * 11 10 8 13 13 H 1.08994 * 116.24690 * 158.83351 * 12 11 10 14 14 C 1.57080 * 99.60578 * 32.80717 * 12 11 10 15 15 C 1.49289 * 126.94840 * 179.97438 * 10 8 7 16 16 H 1.09003 * 116.14904 * 16.68483 * 15 10 8 17 17 C 1.56014 * 104.09626 * 246.67847 * 15 10 8 18 18 N 1.47872 * 105.10366 * 288.76424 * 17 15 10 19 19 C 1.36929 * 126.94329 * 182.00092 * 18 17 15 20 20 H 1.08003 * 120.00203 * 180.02562 * 19 18 17 21 21 C 1.38815 * 120.00340 * 359.97438 * 19 18 17 22 22 N 1.31614 * 119.99693 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00097 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47574 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47397 * 120.00283 * 23 21 19 26 26 H 1.48506 * 109.47382 * 240.00266 * 23 21 19 27 27 H 1.09004 * 109.46650 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47442 * 299.99793 * 1 2 3 29 29 H 1.09000 * 109.46899 * 60.00691 * 1 2 3 30 30 H 1.08997 * 109.47662 * 239.99465 * 2 1 3 31 31 H 1.09005 * 109.47007 * 119.99761 * 2 1 3 32 32 H 1.08996 * 109.47690 * 59.99629 * 3 2 1 33 33 H 1.09000 * 109.46688 * 299.99438 * 3 2 1 34 34 H 1.09002 * 109.47279 * 179.97438 * 6 4 3 35 35 H 1.09004 * 109.47372 * 300.00331 * 6 4 3 36 36 H 1.08998 * 109.47716 * 60.00065 * 6 4 3 37 37 H 1.09002 * 109.46817 * 54.99990 * 7 4 3 38 38 H 1.09000 * 109.47121 * 294.99780 * 7 4 3 39 39 H 1.08994 * 110.31433 * 300.93105 * 11 10 8 40 40 H 1.09001 * 110.31153 * 63.12225 * 11 10 8 41 41 H 1.09006 * 112.36878 * 191.71614 * 14 12 11 42 42 H 1.09000 * 112.37145 * 64.27655 * 14 12 11 43 43 H 1.09004 * 110.31654 * 47.67346 * 17 15 10 44 44 H 1.08996 * 110.31749 * 169.85564 * 17 15 10 45 45 H 0.97002 * 120.00217 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8533 0.8428 6 6 4.0806 0.8327 -1.3063 7 6 4.0799 2.8796 0.1263 8 6 5.5818 2.8706 0.2504 9 8 6.1848 1.8185 0.2400 10 7 6.2547 4.0318 0.3741 11 6 5.6791 5.3936 0.4053 12 6 6.9063 6.3513 0.5099 13 1 6.7422 7.3813 0.1935 14 6 7.9560 5.5233 -0.3146 15 6 7.7317 4.2033 0.5073 16 1 8.3422 3.3452 0.2259 17 6 7.9208 4.7605 1.9522 18 7 7.4091 6.1470 1.9005 19 6 7.3987 7.0590 2.9218 20 1 6.9947 8.0473 2.7591 21 6 7.9064 6.7130 4.1665 22 7 8.3983 5.5085 4.3649 23 14 7.8915 7.9570 5.5599 24 1 7.2892 9.2277 5.0827 25 1 7.0900 7.4240 6.6908 26 1 9.2828 8.2082 6.0143 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9562 -0.8901 34 1 5.1706 0.8331 -1.3061 35 1 3.7173 -0.1911 -1.3959 36 1 3.7176 1.4219 -2.1485 37 1 3.6448 3.3433 1.0116 38 1 3.7919 3.4460 -0.7594 39 1 5.1226 5.5902 -0.5110 40 1 5.0321 5.5111 1.2746 41 1 8.9686 5.9122 -0.2063 42 1 7.6696 5.4148 -1.3607 43 1 7.3435 4.1704 2.6640 44 1 8.9762 4.7565 2.2243 45 1 8.7534 5.2668 5.2347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732146096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:25 Heat of formation + Delta-G solvation = -21.750565 kcal Electronic energy + Delta-G solvation = -22823.386928 eV Core-core repulsion = 19647.921117 eV Total energy + Delta-G solvation = -3175.465812 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.59803 -39.74862 -37.47798 -35.44341 -33.67824 -33.17174 -30.89899 -30.23935 -28.60610 -27.43224 -26.97398 -25.16646 -23.20958 -21.89263 -21.39612 -20.83039 -19.88700 -18.77458 -17.85566 -17.41070 -16.63533 -16.51394 -16.08557 -15.69352 -15.32467 -15.02379 -14.66835 -14.42062 -14.23769 -13.77710 -13.60958 -13.36495 -13.16919 -13.05805 -12.88826 -12.78026 -12.74963 -12.55441 -12.38327 -12.28210 -12.12324 -11.99276 -11.87538 -11.79914 -11.63989 -11.53294 -11.46818 -11.26448 -10.84380 -10.55517 -9.47717 -8.91131 -7.84772 -5.20768 1.46721 1.47127 1.57544 1.72099 2.07335 2.48256 3.33111 3.37545 3.61239 3.81226 3.81776 3.92109 3.96788 4.04973 4.21262 4.24248 4.28785 4.43224 4.54786 4.59943 4.69046 4.72274 4.76507 4.81815 4.87253 4.94293 4.96235 4.99920 5.02712 5.06666 5.14705 5.20711 5.24639 5.27249 5.32656 5.44638 5.45378 5.54571 5.56729 5.61417 5.65079 6.09566 6.74963 7.02528 7.26433 7.70798 8.41549 9.26506 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021708 B = 0.004017 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.525146 B = 6969.049875 C = 7576.291489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.107 4.107 4 C -0.074 4.074 5 H 0.047 0.953 6 C -0.146 4.146 7 C -0.122 4.122 8 C 0.517 3.483 9 O -0.590 6.590 10 N -0.613 5.613 11 C 0.092 3.908 12 C 0.134 3.866 13 H 0.137 0.863 14 C -0.129 4.129 15 C 0.098 3.902 16 H 0.110 0.890 17 C 0.189 3.811 18 N -0.617 5.617 19 C -0.228 4.228 20 H 0.097 0.903 21 C -0.074 4.074 22 N -0.958 5.958 23 Si 0.978 3.022 24 H -0.257 1.257 25 H -0.300 1.300 26 H -0.298 1.298 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.103 0.897 43 H -0.006 1.006 44 H 0.015 0.985 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.299 -3.362 -13.988 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.145 4.145 4 C -0.093 4.093 5 H 0.066 0.934 6 C -0.203 4.203 7 C -0.161 4.161 8 C 0.308 3.692 9 O -0.471 6.471 10 N -0.346 5.346 11 C -0.032 4.032 12 C 0.027 3.973 13 H 0.154 0.846 14 C -0.169 4.169 15 C -0.005 4.005 16 H 0.128 0.872 17 C 0.063 3.937 18 N -0.342 5.342 19 C -0.356 4.356 20 H 0.115 0.885 21 C -0.266 4.266 22 N -0.608 5.608 23 Si 0.807 3.193 24 H -0.180 1.180 25 H -0.228 1.228 26 H -0.225 1.225 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.136 0.864 39 H 0.122 0.878 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.121 0.879 43 H 0.012 0.988 44 H 0.033 0.967 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -13.005 -3.926 -13.759 19.336 hybrid contribution 0.656 0.124 1.696 1.823 sum -12.349 -3.802 -12.063 17.677 Atomic orbital electron populations 1.21759 0.94968 1.01902 1.02085 1.21575 0.96456 0.96593 1.01845 1.21622 0.92636 0.97469 1.02758 1.20871 0.95998 0.93625 0.98760 0.93426 1.21901 1.01127 1.00889 0.96402 1.21740 0.89013 1.00129 1.05242 1.21070 0.91312 0.81633 0.75145 1.90604 1.71591 1.31455 1.53479 1.49391 1.07751 1.06824 1.70666 1.23200 0.97460 0.81006 1.01539 1.23601 0.91514 0.98212 0.83928 0.84589 1.24065 1.00342 0.93778 0.98679 1.24115 0.81914 0.98036 0.96458 0.87241 1.21476 0.95809 0.85082 0.91328 1.45499 1.70779 1.10138 1.07758 1.19595 1.32802 0.94062 0.89185 0.88507 1.25689 1.01834 0.98591 1.00536 1.70181 1.47624 1.20495 1.22503 0.85008 0.76582 0.78779 0.78964 1.18048 1.22783 1.22500 0.92450 0.92854 0.92014 0.91536 0.93162 0.91902 0.90322 0.93756 0.92093 0.91745 0.88888 0.86418 0.87847 0.92946 0.90378 0.87860 0.98771 0.96721 0.94809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.13 -2.17 5.69 30.59 0.17 -1.99 16 3 C -0.11 -1.93 4.68 30.60 0.14 -1.79 16 4 C -0.07 -1.77 2.04 -10.79 -0.02 -1.80 16 5 H 0.05 1.42 7.95 -2.39 -0.02 1.40 16 6 C -0.15 -3.45 8.69 71.98 0.63 -2.82 16 7 C -0.12 -3.08 4.46 29.85 0.13 -2.94 16 8 C 0.52 18.29 7.61 87.66 0.67 18.95 16 9 O -0.59 -25.02 14.32 -3.03 -0.04 -25.07 16 10 N -0.61 -21.83 2.95 -768.26 -2.26 -24.09 16 11 C 0.09 2.81 6.01 87.16 0.52 3.34 16 12 C 0.13 4.53 5.52 46.93 0.26 4.79 16 13 H 0.14 3.81 8.14 -2.39 -0.02 3.79 16 14 C -0.13 -4.05 6.81 33.47 0.23 -3.82 16 15 C 0.10 3.85 5.24 46.94 0.25 4.10 16 16 H 0.11 4.31 8.06 -2.39 -0.02 4.29 16 17 C 0.19 9.58 4.76 87.16 0.42 9.99 16 18 N -0.62 -29.63 3.02 -648.60 -1.96 -31.59 16 19 C -0.23 -12.04 10.37 84.04 0.87 -11.17 16 20 H 0.10 4.70 7.83 -2.91 -0.02 4.68 16 21 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 22 N -0.96 -59.00 10.56 21.65 0.23 -58.77 16 23 Si 0.98 45.33 29.55 68.60 2.03 47.36 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 1.10 6.57 -2.39 -0.02 1.08 16 31 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.04 1.34 5.95 -2.39 -0.01 1.32 16 35 H 0.06 1.29 6.57 -2.39 -0.02 1.27 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 42 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 43 H -0.01 -0.36 7.68 -2.38 -0.02 -0.37 16 44 H 0.01 0.84 7.46 -2.39 -0.02 0.82 16 45 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -71.29 349.37 4.37 -66.92 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.94 Total: 15.49 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 5.44 Total: 9.75 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -3.99 Total: -114.45 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.04 Total: -25.07 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -71.29 4.37 -66.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732146096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.168 kcal (2) G-P(sol) polarization free energy of solvation -71.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds