Wall clock time and date at job start Tue Mar 31 2020 01:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46875 * 2 1 4 4 C 1.52997 * 109.46564 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47604 * 304.99874 * 4 3 2 6 6 C 1.52997 * 109.47319 * 65.00621 * 4 3 2 7 7 C 1.53004 * 109.47511 * 185.46165 * 6 4 3 8 8 C 1.50704 * 109.47025 * 185.00332 * 4 3 2 9 9 O 1.21286 * 120.00129 * 275.05329 * 8 4 3 10 10 N 1.34773 * 120.00021 * 95.05396 * 8 4 3 11 11 C 1.47870 * 126.94524 * 355.04871 * 10 8 4 12 12 C 1.56022 * 105.10205 * 181.73955 * 11 10 8 13 13 H 1.08998 * 116.24342 * 158.83305 * 12 11 10 14 14 C 1.57082 * 99.60974 * 32.80468 * 12 11 10 15 15 C 1.49291 * 126.94229 * 174.73558 * 10 8 4 16 16 H 1.08999 * 116.15784 * 16.95804 * 15 10 8 17 17 C 1.56027 * 104.08942 * 246.96043 * 15 10 8 18 18 N 1.47872 * 105.10100 * 288.76454 * 17 15 10 19 19 C 1.36941 * 126.94250 * 182.01704 * 18 17 15 20 20 H 1.08001 * 120.00013 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99988 * 359.97438 * 19 18 17 22 22 N 1.31618 * 119.99842 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99907 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47018 * 60.00011 * 23 21 19 25 25 H 1.48499 * 109.46937 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47288 * 299.99936 * 23 21 19 27 27 H 1.08994 * 109.47785 * 59.99349 * 1 2 3 28 28 H 1.09006 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46758 * 299.99331 * 1 2 3 30 30 H 1.09005 * 109.46758 * 240.00669 * 2 1 3 31 31 H 1.08990 * 109.47336 * 120.00463 * 2 1 3 32 32 H 1.09005 * 109.46881 * 60.00744 * 3 2 1 33 33 H 1.08990 * 109.47517 * 300.00352 * 3 2 1 34 34 H 1.08998 * 109.47161 * 305.46165 * 6 4 3 35 35 H 1.09002 * 109.47609 * 65.46031 * 6 4 3 36 36 H 1.08994 * 109.47248 * 54.89305 * 7 6 4 37 37 H 1.09000 * 109.47213 * 174.89733 * 7 6 4 38 38 H 1.08999 * 109.46441 * 294.89535 * 7 6 4 39 39 H 1.09005 * 110.30906 * 300.64474 * 11 10 8 40 40 H 1.08996 * 110.31381 * 62.72813 * 11 10 8 41 41 H 1.09003 * 112.36714 * 64.27044 * 14 12 11 42 42 H 1.09001 * 112.37153 * 191.62373 * 14 12 11 43 43 H 1.08993 * 110.31501 * 47.67669 * 17 15 10 44 44 H 1.08997 * 110.31499 * 169.86367 * 17 15 10 45 45 H 0.97001 * 120.00129 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 1 3.9336 0.8529 0.8409 6 6 4.0794 0.8331 -1.3083 7 6 5.6032 0.7077 -1.2530 8 6 4.0724 2.8578 0.1233 9 8 4.1869 3.5495 -0.8664 10 7 4.3944 3.3550 1.3338 11 6 4.2203 2.6898 2.6429 12 6 4.7142 3.7294 3.6962 13 1 4.3509 3.5934 4.7148 14 6 4.2906 5.0576 2.9722 15 6 5.0052 4.6861 1.6236 16 1 4.9494 5.4247 0.8239 17 6 6.4262 4.3416 2.1681 18 7 6.1949 3.7616 3.5085 19 6 7.1466 3.3395 4.3981 20 1 6.8501 2.9312 5.3529 21 6 8.4925 3.4364 4.0725 22 7 8.8539 3.9336 2.9086 23 14 9.7908 2.8613 5.2862 24 1 9.5944 1.4178 5.5741 25 1 11.1405 3.0713 4.7037 26 1 9.6696 3.6383 6.5459 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8898 34 1 3.6383 -0.1542 -1.4452 35 1 3.7978 1.4757 -2.1426 36 1 5.8892 0.1406 -0.3672 37 1 5.9580 0.1915 -2.1451 38 1 6.0481 1.7017 -1.2073 39 1 3.1696 2.4520 2.8096 40 1 4.8248 1.7840 2.6905 41 1 3.2097 5.1419 2.8593 42 1 4.7216 5.9417 3.4419 43 1 6.9137 3.6138 1.5197 44 1 7.0308 5.2451 2.2460 45 1 9.7944 4.0017 2.6812 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732149135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:33 Heat of formation + Delta-G solvation = -4.662292 kcal Electronic energy + Delta-G solvation = -23470.767397 eV Core-core repulsion = 20296.042589 eV Total energy + Delta-G solvation = -3174.724809 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.19419 -38.35846 -35.92925 -33.58935 -32.94278 -31.51423 -29.43328 -28.70966 -28.45492 -25.21054 -24.67684 -23.42735 -22.44223 -21.16301 -19.93186 -19.62957 -18.25711 -17.27395 -16.39002 -15.64594 -15.21352 -15.14751 -14.70784 -14.08315 -14.02397 -13.50448 -13.38834 -13.18979 -12.98349 -12.62434 -12.22383 -12.05122 -11.83351 -11.67750 -11.61526 -11.32395 -11.29745 -11.12469 -11.00912 -10.85035 -10.80409 -10.71338 -10.57150 -10.53961 -10.35449 -10.24392 -10.08260 -9.63557 -9.21346 -8.69323 -7.94357 -6.92862 -5.76962 -3.11606 3.11723 3.36922 3.41246 3.43290 3.46607 4.41507 4.66598 4.76629 4.90208 5.01114 5.10207 5.19428 5.20674 5.34086 5.40260 5.48816 5.54040 5.56904 5.65028 5.66144 5.73385 5.78306 5.79782 5.85381 5.90920 5.95238 6.05098 6.12926 6.19079 6.22011 6.27253 6.30360 6.40689 6.43323 6.53006 6.55675 6.60714 6.72762 7.42053 7.49741 7.71389 8.09348 8.18160 8.69066 9.09832 9.70804 10.40213 11.34971 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.004910 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.492175 B = 5700.974566 C = 5900.653987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.104 4.104 5 H 0.087 0.913 6 C -0.106 4.106 7 C -0.155 4.155 8 C 0.535 3.465 9 O -0.558 6.558 10 N -0.606 5.606 11 C 0.085 3.915 12 C 0.140 3.860 13 H 0.105 0.895 14 C -0.152 4.152 15 C 0.096 3.904 16 H 0.112 0.888 17 C 0.176 3.824 18 N -0.596 5.596 19 C -0.233 4.233 20 H 0.080 0.920 21 C -0.005 4.005 22 N -0.919 5.919 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.909 -5.745 -3.694 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.143 4.143 4 C -0.125 4.125 5 H 0.105 0.895 6 C -0.144 4.144 7 C -0.212 4.212 8 C 0.324 3.676 9 O -0.437 6.437 10 N -0.339 5.339 11 C -0.040 4.040 12 C 0.032 3.968 13 H 0.123 0.877 14 C -0.192 4.192 15 C -0.006 4.006 16 H 0.130 0.870 17 C 0.051 3.949 18 N -0.321 5.321 19 C -0.361 4.361 20 H 0.098 0.902 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.554 -5.440 -4.279 15.219 hybrid contribution 0.870 -0.386 0.666 1.162 sum -12.684 -5.826 -3.613 14.418 Atomic orbital electron populations 1.21769 0.95915 1.01417 1.01817 1.21584 0.95694 0.96524 1.02348 1.21485 0.92843 0.97327 1.02633 1.21380 0.96657 0.93979 1.00509 0.89483 1.21451 0.96246 1.00321 0.96372 1.21792 0.95620 1.02477 1.01303 1.20122 0.77170 0.88597 0.81718 1.90631 1.55604 1.61038 1.36417 1.49256 1.60694 1.18387 1.05607 1.23262 0.98744 0.98073 0.83944 1.23157 0.86478 0.91603 0.95605 0.87684 1.24160 0.98690 0.99559 0.96760 1.24332 0.96097 0.84506 0.95697 0.87032 1.21896 0.89159 0.98190 0.85651 1.45212 0.98589 1.72728 1.15531 1.19000 0.85566 1.35120 0.96368 0.90233 1.24809 0.96998 1.01146 0.97205 1.69909 1.15691 1.50042 1.20930 0.86204 0.81016 0.78410 0.80119 1.21171 1.21622 1.21116 0.92806 0.92855 0.92764 0.91567 0.91829 0.91762 0.91352 0.91433 0.90920 0.92810 0.92850 0.92193 0.92988 0.91211 0.91762 0.89886 0.93529 0.92735 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.18 5.70 -26.73 -0.15 -1.33 16 3 C -0.10 -1.24 4.66 -26.73 -0.12 -1.36 16 4 C -0.10 -1.48 1.86 -91.77 -0.17 -1.66 16 5 H 0.09 1.23 7.13 -51.93 -0.37 0.86 16 6 C -0.11 -1.44 5.04 -26.73 -0.13 -1.57 16 7 C -0.15 -2.30 9.65 37.16 0.36 -1.94 16 8 C 0.54 9.83 6.03 -10.99 -0.07 9.76 16 9 O -0.56 -11.93 16.33 5.55 0.09 -11.84 16 10 N -0.61 -11.28 2.95 -156.77 -0.46 -11.74 16 11 C 0.09 1.45 5.62 -1.67 -0.01 1.44 16 12 C 0.14 2.60 5.53 -62.55 -0.35 2.25 16 13 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 14 C -0.15 -2.60 6.81 -22.30 -0.15 -2.76 16 15 C 0.10 1.90 5.25 -62.55 -0.33 1.57 16 16 H 0.11 2.17 8.04 -51.93 -0.42 1.75 16 17 C 0.18 4.24 4.76 -1.67 -0.01 4.23 16 18 N -0.60 -14.28 3.02 -156.34 -0.47 -14.75 16 19 C -0.23 -6.15 10.38 -15.06 -0.16 -6.31 16 20 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 21 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 22 N -0.92 -26.70 10.56 55.49 0.59 -26.12 16 23 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.60 6.45 -51.93 -0.34 0.27 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.75 6.32 -51.93 -0.33 0.42 16 35 H 0.07 1.06 7.66 -51.93 -0.40 0.66 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.08 7.42 -51.93 -0.39 0.69 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.30 7.88 -51.93 -0.41 0.89 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 44 H 0.05 1.45 7.46 -51.93 -0.39 1.06 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -30.64 350.31 -9.07 -39.71 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.05 Total: 1.68 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.02 Total: 1.20 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.35 Total: -52.61 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.64 -9.07 -39.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732149135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.050 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds