Wall clock time and date at job start Tue Mar 31 2020 01:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46875 * 2 1 4 4 C 1.52997 * 109.46564 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47604 * 304.99874 * 4 3 2 6 6 C 1.52997 * 109.47319 * 65.00621 * 4 3 2 7 7 C 1.53004 * 109.47511 * 185.46165 * 6 4 3 8 8 C 1.50704 * 109.47025 * 185.00332 * 4 3 2 9 9 O 1.21286 * 120.00129 * 275.05329 * 8 4 3 10 10 N 1.34773 * 120.00021 * 95.05396 * 8 4 3 11 11 C 1.47870 * 126.94524 * 355.04871 * 10 8 4 12 12 C 1.56022 * 105.10205 * 181.73955 * 11 10 8 13 13 H 1.08998 * 116.24342 * 158.83305 * 12 11 10 14 14 C 1.57082 * 99.60974 * 32.80468 * 12 11 10 15 15 C 1.49291 * 126.94229 * 174.73558 * 10 8 4 16 16 H 1.08999 * 116.15784 * 16.95804 * 15 10 8 17 17 C 1.56027 * 104.08942 * 246.96043 * 15 10 8 18 18 N 1.47872 * 105.10100 * 288.76454 * 17 15 10 19 19 C 1.36941 * 126.94250 * 182.01704 * 18 17 15 20 20 H 1.08001 * 120.00013 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99988 * 359.97438 * 19 18 17 22 22 N 1.31618 * 119.99842 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99907 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47018 * 60.00011 * 23 21 19 25 25 H 1.48499 * 109.46937 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47288 * 299.99936 * 23 21 19 27 27 H 1.08994 * 109.47785 * 59.99349 * 1 2 3 28 28 H 1.09006 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46758 * 299.99331 * 1 2 3 30 30 H 1.09005 * 109.46758 * 240.00669 * 2 1 3 31 31 H 1.08990 * 109.47336 * 120.00463 * 2 1 3 32 32 H 1.09005 * 109.46881 * 60.00744 * 3 2 1 33 33 H 1.08990 * 109.47517 * 300.00352 * 3 2 1 34 34 H 1.08998 * 109.47161 * 305.46165 * 6 4 3 35 35 H 1.09002 * 109.47609 * 65.46031 * 6 4 3 36 36 H 1.08994 * 109.47248 * 54.89305 * 7 6 4 37 37 H 1.09000 * 109.47213 * 174.89733 * 7 6 4 38 38 H 1.08999 * 109.46441 * 294.89535 * 7 6 4 39 39 H 1.09005 * 110.30906 * 300.64474 * 11 10 8 40 40 H 1.08996 * 110.31381 * 62.72813 * 11 10 8 41 41 H 1.09003 * 112.36714 * 64.27044 * 14 12 11 42 42 H 1.09001 * 112.37153 * 191.62373 * 14 12 11 43 43 H 1.08993 * 110.31501 * 47.67669 * 17 15 10 44 44 H 1.08997 * 110.31499 * 169.86367 * 17 15 10 45 45 H 0.97001 * 120.00129 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 1 3.9336 0.8529 0.8409 6 6 4.0794 0.8331 -1.3083 7 6 5.6032 0.7077 -1.2530 8 6 4.0724 2.8578 0.1233 9 8 4.1869 3.5495 -0.8664 10 7 4.3944 3.3550 1.3338 11 6 4.2203 2.6898 2.6429 12 6 4.7142 3.7294 3.6962 13 1 4.3509 3.5934 4.7148 14 6 4.2906 5.0576 2.9722 15 6 5.0052 4.6861 1.6236 16 1 4.9494 5.4247 0.8239 17 6 6.4262 4.3416 2.1681 18 7 6.1949 3.7616 3.5085 19 6 7.1466 3.3395 4.3981 20 1 6.8501 2.9312 5.3529 21 6 8.4925 3.4364 4.0725 22 7 8.8539 3.9336 2.9086 23 14 9.7908 2.8613 5.2862 24 1 9.5944 1.4178 5.5741 25 1 11.1405 3.0713 4.7037 26 1 9.6696 3.6383 6.5459 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8898 34 1 3.6383 -0.1542 -1.4452 35 1 3.7978 1.4757 -2.1426 36 1 5.8892 0.1406 -0.3672 37 1 5.9580 0.1915 -2.1451 38 1 6.0481 1.7017 -1.2073 39 1 3.1696 2.4520 2.8096 40 1 4.8248 1.7840 2.6905 41 1 3.2097 5.1419 2.8593 42 1 4.7216 5.9417 3.4419 43 1 6.9137 3.6138 1.5197 44 1 7.0308 5.2451 2.2460 45 1 9.7944 4.0017 2.6812 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732149135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:32 Heat of formation + Delta-G solvation = -21.960861 kcal Electronic energy + Delta-G solvation = -23471.517520 eV Core-core repulsion = 20296.042589 eV Total energy + Delta-G solvation = -3175.474931 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.70458 -39.82569 -37.07347 -35.44266 -33.91294 -33.26677 -30.97098 -30.25634 -29.81802 -26.97871 -25.88369 -24.90495 -23.72015 -22.22793 -21.44186 -21.09991 -19.83355 -18.83783 -18.06180 -17.31858 -16.54541 -16.34056 -16.03295 -15.81939 -15.26204 -15.00197 -14.80663 -14.36718 -14.05365 -13.81541 -13.72140 -13.55856 -13.33035 -13.13914 -12.89577 -12.83846 -12.67020 -12.61206 -12.40418 -12.25667 -12.15590 -12.10307 -11.93803 -11.89047 -11.71811 -11.65147 -11.52842 -11.27510 -10.82564 -10.54550 -9.50905 -8.90946 -7.84072 -5.20109 1.46825 1.49656 1.55787 1.67369 2.04644 2.48812 3.32653 3.35671 3.55006 3.71545 3.78328 3.90577 3.95065 4.03719 4.20499 4.21899 4.25758 4.33299 4.43994 4.54242 4.59498 4.68313 4.71211 4.81482 4.85662 4.88791 4.92550 4.96581 5.00765 5.07170 5.08960 5.13500 5.23076 5.25127 5.30176 5.32775 5.42161 5.44642 5.52788 5.55451 5.64632 6.09529 6.71743 7.02695 7.22528 7.71153 8.41920 9.26881 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.004910 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.492175 B = 5700.974566 C = 5900.653987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.097 4.097 4 C -0.097 4.097 5 H 0.093 0.907 6 C -0.102 4.102 7 C -0.152 4.152 8 C 0.527 3.473 9 O -0.595 6.595 10 N -0.611 5.611 11 C 0.093 3.907 12 C 0.135 3.865 13 H 0.137 0.863 14 C -0.129 4.129 15 C 0.097 3.903 16 H 0.109 0.891 17 C 0.191 3.809 18 N -0.615 5.615 19 C -0.231 4.231 20 H 0.096 0.904 21 C -0.070 4.070 22 N -0.958 5.958 23 Si 0.977 3.023 24 H -0.276 1.276 25 H -0.304 1.304 26 H -0.274 1.274 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.016 0.984 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.101 0.899 42 H 0.079 0.921 43 H -0.005 1.005 44 H 0.015 0.985 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.875 -7.462 -2.243 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.136 4.136 4 C -0.118 4.118 5 H 0.111 0.889 6 C -0.140 4.140 7 C -0.210 4.210 8 C 0.318 3.682 9 O -0.477 6.477 10 N -0.343 5.343 11 C -0.031 4.031 12 C 0.029 3.971 13 H 0.154 0.846 14 C -0.169 4.169 15 C -0.007 4.007 16 H 0.127 0.873 17 C 0.065 3.935 18 N -0.340 5.340 19 C -0.360 4.360 20 H 0.114 0.886 21 C -0.263 4.263 22 N -0.607 5.607 23 Si 0.806 3.194 24 H -0.202 1.202 25 H -0.230 1.230 26 H -0.199 1.199 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.098 0.902 43 H 0.014 0.986 44 H 0.034 0.966 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -16.582 -7.180 -2.788 18.284 hybrid contribution 1.773 0.157 0.190 1.790 sum -14.809 -7.023 -2.598 16.595 Atomic orbital electron populations 1.21758 0.94912 1.02227 1.01915 1.21564 0.96506 0.94675 1.02964 1.21468 0.90437 0.99135 1.02512 1.21440 0.98560 0.90822 1.01013 0.88929 1.21472 0.95043 1.01855 0.95581 1.21776 0.96851 1.00077 1.02282 1.20969 0.76348 0.89957 0.80916 1.90606 1.57172 1.62350 1.37567 1.49371 1.60364 1.18007 1.06591 1.23190 1.01048 0.96485 0.82398 1.23587 0.83012 0.92744 0.97795 0.84581 1.24056 1.00404 0.98585 0.93817 1.24133 0.93772 0.85591 0.97190 0.87335 1.21466 0.91238 0.95049 0.85783 1.45461 1.01159 1.72472 1.14885 1.19513 0.86204 1.33279 0.97008 0.88605 1.25656 0.99370 1.02397 0.98841 1.70165 1.15003 1.52417 1.23114 0.85167 0.77736 0.78344 0.78183 1.20170 1.23044 1.19933 0.92881 0.91714 0.92568 0.91005 0.91169 0.91336 0.92101 0.87906 0.92130 0.92877 0.90868 0.96444 0.88308 0.92948 0.88047 0.90249 0.98648 0.96638 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.28 16 2 C -0.12 -1.85 5.70 30.59 0.17 -1.67 16 3 C -0.10 -2.03 4.66 30.59 0.14 -1.88 16 4 C -0.10 -2.62 1.86 -11.54 -0.02 -2.64 16 5 H 0.09 2.41 7.13 -2.39 -0.02 2.40 16 6 C -0.10 -2.63 5.04 30.59 0.15 -2.47 16 7 C -0.15 -4.57 9.65 71.98 0.69 -3.88 16 8 C 0.53 19.26 6.03 87.66 0.53 19.79 16 9 O -0.60 -26.08 16.33 -3.05 -0.05 -26.13 16 10 N -0.61 -22.31 2.95 -768.29 -2.26 -24.58 16 11 C 0.09 2.93 5.62 87.16 0.49 3.42 16 12 C 0.14 4.65 5.53 46.93 0.26 4.91 16 13 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 14 C -0.13 -4.13 6.81 33.46 0.23 -3.90 16 15 C 0.10 3.85 5.25 46.93 0.25 4.09 16 16 H 0.11 4.36 8.04 -2.39 -0.02 4.34 16 17 C 0.19 9.67 4.76 87.17 0.42 10.09 16 18 N -0.62 -29.59 3.02 -648.53 -1.96 -31.55 16 19 C -0.23 -12.24 10.38 84.03 0.87 -11.36 16 20 H 0.10 4.65 7.83 -2.91 -0.02 4.63 16 21 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 22 N -0.96 -58.70 10.56 21.65 0.23 -58.47 16 23 Si 0.98 45.16 29.55 68.60 2.03 47.19 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 30 H 0.07 1.03 6.45 -2.38 -0.02 1.02 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 1.95 6.32 -2.39 -0.02 1.94 16 35 H 0.06 1.73 7.66 -2.39 -0.02 1.71 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.02 0.64 7.42 -2.39 -0.02 0.62 16 39 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.05 1.86 7.88 -2.39 -0.02 1.84 16 41 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.00 -0.28 7.68 -2.39 -0.02 -0.30 16 44 H 0.02 0.89 7.46 -2.39 -0.02 0.87 16 45 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -71.21 350.31 4.28 -66.93 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.94 Total: 16.87 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.36 Total: 9.74 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -3.99 Total: -114.60 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -71.21 4.28 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732149135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.970 kcal (2) G-P(sol) polarization free energy of solvation -71.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds