Wall clock time and date at job start Tue Mar 31 2020 02:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46952 * 2 1 4 4 H 1.09003 * 115.55224 * 29.27961 * 3 2 1 5 5 C 1.53002 * 117.49910 * 243.60194 * 3 2 1 6 6 C 1.52999 * 60.00408 * 252.51351 * 5 3 2 7 7 H 1.08996 * 117.50074 * 107.48509 * 6 5 3 8 8 C 1.50697 * 117.49729 * 252.51325 * 6 5 3 9 9 O 1.21276 * 120.00184 * 68.62210 * 8 6 5 10 10 N 1.34778 * 119.99858 * 248.62133 * 8 6 5 11 11 C 1.46497 * 120.00228 * 175.87049 * 10 8 6 12 12 C 1.53002 * 109.47332 * 175.37789 * 11 10 8 13 13 C 1.53007 * 109.46691 * 55.38266 * 11 10 8 14 14 N 1.46503 * 109.47206 * 60.00278 * 13 11 10 15 15 C 1.36936 * 119.99755 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00033 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99764 * 179.97438 * 15 14 13 18 18 N 1.31616 * 120.00206 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99932 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47385 * 59.99719 * 19 17 15 21 21 H 1.48501 * 109.46989 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46895 * 299.99992 * 19 17 15 23 23 C 1.53000 * 109.47267 * 295.38604 * 11 10 8 24 24 C 1.52999 * 117.49720 * 1.80182 * 23 11 10 25 25 C 1.53000 * 117.49612 * 293.14197 * 23 11 10 26 26 H 1.08996 * 109.47682 * 300.00189 * 1 2 3 27 27 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47125 * 60.00434 * 1 2 3 29 29 H 1.08998 * 109.47063 * 119.99852 * 2 1 3 30 30 H 1.09002 * 109.47342 * 240.00035 * 2 1 3 31 31 H 1.09005 * 117.49668 * 0.02562 * 5 3 2 32 32 H 1.08999 * 117.49806 * 145.02009 * 5 3 2 33 33 H 0.96999 * 119.99598 * 355.86950 * 10 8 6 34 34 H 1.09006 * 109.46453 * 60.00325 * 12 11 10 35 35 H 1.09001 * 109.46773 * 180.02562 * 12 11 10 36 36 H 1.08992 * 109.47344 * 300.00580 * 12 11 10 37 37 H 1.09006 * 109.46853 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47265 * 299.99810 * 13 11 10 39 39 H 0.97001 * 119.99779 * 359.97438 * 14 13 11 40 40 H 0.96995 * 119.99881 * 179.97438 * 18 17 15 41 41 H 1.09000 * 115.55068 * 147.47278 * 23 11 10 42 42 H 1.09002 * 117.49876 * 0.02562 * 24 23 11 43 43 H 1.09003 * 117.49860 * 145.02566 * 24 23 11 44 44 H 1.08994 * 117.49780 * 214.98002 * 25 23 11 45 45 H 1.09001 * 117.49714 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3879 2.1717 0.4810 5 6 2.8443 1.9074 -1.2156 6 6 3.5501 1.6579 0.1187 7 1 4.1802 0.7720 0.1968 8 6 4.0225 2.8621 0.8918 9 8 3.2153 3.6168 1.3916 10 7 5.3421 3.1004 1.0278 11 6 5.8010 4.3179 1.7010 12 6 7.3259 4.2893 1.8233 13 6 5.1788 4.3944 3.0967 14 7 5.5843 3.2226 3.8770 15 6 5.1467 3.0735 5.1659 16 1 4.5030 3.8198 5.6074 17 6 5.5305 1.9629 5.9051 18 7 6.3154 1.0536 5.3672 19 14 4.9329 1.7591 7.6632 20 1 3.4491 1.7049 7.6785 21 1 5.4806 0.5002 8.2293 22 1 5.3946 2.9105 8.4795 23 6 5.3775 5.5417 0.8861 24 6 4.5618 5.2964 -0.3848 25 6 6.0249 5.7349 -0.4866 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.0098 1.1857 -2.0156 32 1 2.7216 2.9426 -1.5343 33 1 5.9878 2.4657 0.6801 34 1 7.7690 4.2348 0.8288 35 1 7.6672 5.1950 2.3245 36 1 7.6275 3.4175 2.4037 37 1 5.5206 5.3001 3.5978 38 1 4.0925 4.4148 3.0097 39 1 6.1628 2.5524 3.4805 40 1 6.5838 0.2778 5.8839 41 1 5.1497 6.4364 1.4655 42 1 4.3265 4.2632 -0.6402 43 1 3.7976 6.0299 -0.6418 44 1 6.2226 6.7566 -0.8105 45 1 6.7528 4.9903 -0.8090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732249062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:31 Heat of formation + Delta-G solvation = 24.157201 kcal Electronic energy + Delta-G solvation = -23230.384665 eV Core-core repulsion = 20056.909564 eV Total energy + Delta-G solvation = -3173.475102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.38575 -38.12429 -36.22773 -34.86917 -33.23856 -32.07821 -31.17787 -29.47719 -26.01052 -24.52508 -23.74366 -23.45895 -22.09554 -21.30278 -20.60296 -19.76708 -18.92584 -17.21256 -17.02657 -15.82994 -15.39700 -14.82115 -14.70174 -14.33200 -14.09410 -13.84647 -13.62607 -13.21417 -12.83087 -12.50460 -12.35431 -12.16024 -12.03393 -12.02498 -11.82668 -11.33548 -11.23288 -11.04508 -10.97917 -10.80623 -10.74522 -10.68878 -10.19723 -10.14507 -10.01609 -9.89757 -9.78276 -9.59069 -9.15206 -8.64731 -8.47193 -6.75037 -5.67432 -2.92588 2.96117 3.49629 3.51976 3.53711 3.55742 3.98113 4.05104 4.66142 4.70925 4.86501 4.89797 4.91363 5.13545 5.17612 5.21364 5.33748 5.42433 5.45121 5.50927 5.60180 5.64732 5.69869 5.75633 5.80267 5.82221 5.95240 6.00767 6.03432 6.09889 6.11235 6.16655 6.20818 6.31522 6.36883 6.42850 6.44998 6.68324 6.70523 7.03191 7.28852 7.80237 8.04189 8.52783 8.80268 9.63780 10.23191 10.58942 11.56081 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.006594 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.502018 B = 4245.426312 C = 6125.836445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.115 4.115 4 H 0.117 0.883 5 C -0.155 4.155 6 C -0.187 4.187 7 H 0.119 0.881 8 C 0.553 3.447 9 O -0.525 6.525 10 N -0.713 5.713 11 C 0.200 3.800 12 C -0.147 4.147 13 C 0.139 3.861 14 N -0.725 5.725 15 C -0.226 4.226 16 H 0.067 0.933 17 C -0.017 4.017 18 N -0.939 5.939 19 Si 0.905 3.095 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.287 1.287 23 C -0.143 4.143 24 C -0.165 4.165 25 C -0.183 4.183 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.395 0.605 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.018 0.982 38 H 0.057 0.943 39 H 0.381 0.619 40 H 0.253 0.747 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.309 2.370 -16.869 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.134 4.134 4 H 0.135 0.865 5 C -0.192 4.192 6 C -0.208 4.208 7 H 0.137 0.863 8 C 0.339 3.661 9 O -0.401 6.401 10 N -0.363 5.363 11 C 0.114 3.886 12 C -0.205 4.205 13 C 0.011 3.989 14 N -0.369 5.369 15 C -0.358 4.358 16 H 0.085 0.915 17 C -0.212 4.212 18 N -0.588 5.588 19 Si 0.736 3.264 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.162 4.162 24 C -0.202 4.202 25 C -0.220 4.220 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.228 0.772 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.215 0.785 40 H 0.063 0.937 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.970 2.962 -16.339 17.073 hybrid contribution 0.347 -0.724 0.823 1.150 sum -3.622 2.238 -15.516 16.090 Atomic orbital electron populations 1.21730 0.95394 1.01409 1.02025 1.21150 0.96095 0.93921 1.02134 1.22410 0.91919 0.98503 1.00559 0.86483 1.23088 1.03050 1.02673 0.90420 1.22353 0.97705 0.99591 1.01180 0.86259 1.19237 0.82445 0.84986 0.79408 1.90646 1.53952 1.48413 1.47058 1.45901 1.06782 1.23838 1.59826 1.20046 0.94115 0.82094 0.92365 1.21982 0.93197 1.03986 1.01313 1.21180 0.99310 0.91013 0.87412 1.42224 1.59470 1.23206 1.12019 1.19194 1.23335 1.04240 0.89001 0.91492 1.24657 1.00821 0.97428 0.98344 1.69634 1.40102 1.12459 1.36648 0.86289 0.78223 0.76809 0.85055 1.21439 1.21813 1.21416 1.22564 1.04219 0.99731 0.89714 1.22963 0.93373 1.02157 1.01747 1.22963 0.96324 1.01744 1.01000 0.92398 0.92818 0.92770 0.91168 0.91941 0.88276 0.88561 0.77176 0.92959 0.91126 0.90773 0.96412 0.92529 0.78494 0.93748 0.87503 0.88762 0.89660 0.89422 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.87 37.15 0.37 -1.13 16 2 C -0.10 -1.07 6.22 -26.73 -0.17 -1.24 16 3 C -0.12 -1.51 5.25 -90.61 -0.48 -1.98 16 4 H 0.12 1.77 7.60 -51.93 -0.39 1.37 16 5 C -0.15 -1.72 9.74 -26.73 -0.26 -1.98 16 6 C -0.19 -2.60 5.91 -91.77 -0.54 -3.14 16 7 H 0.12 1.54 8.14 -51.93 -0.42 1.11 16 8 C 0.55 9.49 4.64 -10.99 -0.05 9.44 16 9 O -0.52 -10.82 12.53 5.56 0.07 -10.75 16 10 N -0.71 -11.32 4.20 -47.61 -0.20 -11.52 16 11 C 0.20 3.36 0.55 -131.82 -0.07 3.29 16 12 C -0.15 -2.24 8.18 37.16 0.30 -1.94 16 13 C 0.14 3.05 4.83 -4.04 -0.02 3.03 16 14 N -0.72 -18.83 5.17 -59.90 -0.31 -19.14 16 15 C -0.23 -6.61 9.99 -15.06 -0.15 -6.76 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 18 N -0.94 -28.72 13.06 55.49 0.72 -27.99 16 19 Si 0.90 23.26 29.55 -169.99 -5.02 18.24 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 C -0.14 -2.12 4.86 -90.62 -0.44 -2.57 16 24 C -0.17 -2.28 8.53 -26.69 -0.23 -2.51 16 25 C -0.18 -2.21 9.68 -26.69 -0.26 -2.47 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.60 7.88 -51.93 -0.41 0.19 16 31 H 0.10 0.89 8.03 -51.93 -0.42 0.47 16 32 H 0.10 1.09 7.65 -51.93 -0.40 0.69 16 33 H 0.39 5.42 8.48 -40.82 -0.35 5.08 16 34 H 0.05 0.65 6.89 -51.93 -0.36 0.29 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.30 6.86 -51.93 -0.36 0.94 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 1.39 5.72 -51.93 -0.30 1.10 16 39 H 0.38 10.12 6.35 -40.82 -0.26 9.86 16 40 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.11 1.62 8.06 -51.93 -0.42 1.20 16 42 H 0.09 1.34 4.53 -51.93 -0.24 1.11 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.09 1.03 7.17 -51.93 -0.37 0.66 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -32.79 354.24 -9.10 -41.90 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -7.61 Total: 14.49 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.09 Total: -10.56 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.21 Total: -58.65 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.07 Total: -10.75 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.79 -9.10 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732249062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.052 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds