Wall clock time and date at job start Tue Mar 31 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46952 * 2 1 4 4 H 1.09003 * 115.55224 * 29.27961 * 3 2 1 5 5 C 1.53002 * 117.49910 * 243.60194 * 3 2 1 6 6 C 1.52999 * 60.00408 * 252.51351 * 5 3 2 7 7 H 1.08996 * 117.50074 * 107.48509 * 6 5 3 8 8 C 1.50697 * 117.49729 * 252.51325 * 6 5 3 9 9 O 1.21276 * 120.00184 * 68.62210 * 8 6 5 10 10 N 1.34778 * 119.99858 * 248.62133 * 8 6 5 11 11 C 1.46497 * 120.00228 * 175.87049 * 10 8 6 12 12 C 1.53002 * 109.47332 * 175.37789 * 11 10 8 13 13 C 1.53007 * 109.46691 * 55.38266 * 11 10 8 14 14 N 1.46503 * 109.47206 * 60.00278 * 13 11 10 15 15 C 1.36936 * 119.99755 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00033 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99764 * 179.97438 * 15 14 13 18 18 N 1.31616 * 120.00206 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99932 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47385 * 59.99719 * 19 17 15 21 21 H 1.48501 * 109.46989 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46895 * 299.99992 * 19 17 15 23 23 C 1.53000 * 109.47267 * 295.38604 * 11 10 8 24 24 C 1.52999 * 117.49720 * 1.80182 * 23 11 10 25 25 C 1.53000 * 117.49612 * 293.14197 * 23 11 10 26 26 H 1.08996 * 109.47682 * 300.00189 * 1 2 3 27 27 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47125 * 60.00434 * 1 2 3 29 29 H 1.08998 * 109.47063 * 119.99852 * 2 1 3 30 30 H 1.09002 * 109.47342 * 240.00035 * 2 1 3 31 31 H 1.09005 * 117.49668 * 0.02562 * 5 3 2 32 32 H 1.08999 * 117.49806 * 145.02009 * 5 3 2 33 33 H 0.96999 * 119.99598 * 355.86950 * 10 8 6 34 34 H 1.09006 * 109.46453 * 60.00325 * 12 11 10 35 35 H 1.09001 * 109.46773 * 180.02562 * 12 11 10 36 36 H 1.08992 * 109.47344 * 300.00580 * 12 11 10 37 37 H 1.09006 * 109.46853 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47265 * 299.99810 * 13 11 10 39 39 H 0.97001 * 119.99779 * 359.97438 * 14 13 11 40 40 H 0.96995 * 119.99881 * 179.97438 * 18 17 15 41 41 H 1.09000 * 115.55068 * 147.47278 * 23 11 10 42 42 H 1.09002 * 117.49876 * 0.02562 * 24 23 11 43 43 H 1.09003 * 117.49860 * 145.02566 * 24 23 11 44 44 H 1.08994 * 117.49780 * 214.98002 * 25 23 11 45 45 H 1.09001 * 117.49714 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3879 2.1717 0.4810 5 6 2.8443 1.9074 -1.2156 6 6 3.5501 1.6579 0.1187 7 1 4.1802 0.7720 0.1968 8 6 4.0225 2.8621 0.8918 9 8 3.2153 3.6168 1.3916 10 7 5.3421 3.1004 1.0278 11 6 5.8010 4.3179 1.7010 12 6 7.3259 4.2893 1.8233 13 6 5.1788 4.3944 3.0967 14 7 5.5843 3.2226 3.8770 15 6 5.1467 3.0735 5.1659 16 1 4.5030 3.8198 5.6074 17 6 5.5305 1.9629 5.9051 18 7 6.3154 1.0536 5.3672 19 14 4.9329 1.7591 7.6632 20 1 3.4491 1.7049 7.6785 21 1 5.4806 0.5002 8.2293 22 1 5.3946 2.9105 8.4795 23 6 5.3775 5.5417 0.8861 24 6 4.5618 5.2964 -0.3848 25 6 6.0249 5.7349 -0.4866 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.0098 1.1857 -2.0156 32 1 2.7216 2.9426 -1.5343 33 1 5.9878 2.4657 0.6801 34 1 7.7690 4.2348 0.8288 35 1 7.6672 5.1950 2.3245 36 1 7.6275 3.4175 2.4037 37 1 5.5206 5.3001 3.5978 38 1 4.0925 4.4148 3.0097 39 1 6.1628 2.5524 3.4805 40 1 6.5838 0.2778 5.8839 41 1 5.1497 6.4364 1.4655 42 1 4.3265 4.2632 -0.6402 43 1 3.7976 6.0299 -0.6418 44 1 6.2226 6.7566 -0.8105 45 1 6.7528 4.9903 -0.8090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732249062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:30 Heat of formation + Delta-G solvation = 3.692548 kcal Electronic energy + Delta-G solvation = -23231.272079 eV Core-core repulsion = 20056.909564 eV Total energy + Delta-G solvation = -3174.362516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.68872 -39.27126 -37.43381 -36.57786 -34.87521 -33.30679 -32.71273 -31.14459 -27.67778 -25.89491 -25.24217 -24.55637 -23.13508 -22.90936 -21.63038 -20.93601 -20.30709 -19.27028 -18.25271 -17.16978 -16.93989 -16.32729 -15.85532 -15.75551 -15.37953 -15.14117 -15.07129 -14.85402 -14.57079 -13.66473 -13.54255 -13.43308 -13.31376 -13.28733 -13.01122 -12.96994 -12.79205 -12.40622 -12.26998 -12.18670 -12.14563 -12.00349 -11.90919 -11.77795 -11.21698 -11.19998 -11.04293 -10.93319 -10.87798 -10.32707 -9.86942 -8.91699 -7.95735 -5.21177 1.42470 1.45711 1.51768 1.70462 2.27903 2.54188 2.90969 2.96292 3.37055 3.65395 3.70089 3.82057 3.89627 3.99874 4.02671 4.17777 4.27051 4.32733 4.36922 4.39829 4.48768 4.54947 4.59562 4.75678 4.81357 4.87920 4.90269 4.95220 4.97671 5.01736 5.08959 5.14744 5.21481 5.24673 5.28715 5.31114 5.33248 5.36736 5.45651 5.49434 5.79527 6.27450 6.76276 7.34219 7.50130 8.10020 8.38624 9.27310 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.006594 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.502018 B = 4245.426312 C = 6125.836445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.128 4.128 4 H 0.088 0.912 5 C -0.119 4.119 6 C -0.204 4.204 7 H 0.131 0.869 8 C 0.545 3.455 9 O -0.568 6.568 10 N -0.706 5.706 11 C 0.207 3.793 12 C -0.139 4.139 13 C 0.140 3.860 14 N -0.728 5.728 15 C -0.244 4.244 16 H 0.060 0.940 17 C -0.069 4.069 18 N -0.964 5.964 19 Si 0.968 3.032 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.278 1.278 23 C -0.166 4.166 24 C -0.171 4.171 25 C -0.148 4.148 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.095 0.905 33 H 0.407 0.593 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.012 0.988 38 H 0.028 0.972 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 2.066 -18.915 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C -0.147 4.147 4 H 0.106 0.894 5 C -0.156 4.156 6 C -0.225 4.225 7 H 0.149 0.851 8 C 0.334 3.666 9 O -0.447 6.447 10 N -0.357 5.357 11 C 0.121 3.879 12 C -0.196 4.196 13 C 0.012 3.988 14 N -0.371 5.371 15 C -0.376 4.376 16 H 0.078 0.922 17 C -0.262 4.262 18 N -0.615 5.615 19 Si 0.797 3.203 20 H -0.213 1.213 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.186 4.186 24 C -0.208 4.208 25 C -0.184 4.184 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.151 0.849 32 H 0.113 0.887 33 H 0.242 0.758 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.046 0.954 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.127 0.873 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.350 2.670 -18.407 18.899 hybrid contribution 0.114 -0.576 1.466 1.579 sum -3.236 2.094 -16.941 17.374 Atomic orbital electron populations 1.21723 0.94695 1.02243 1.01765 1.21146 0.96721 0.92547 1.02458 1.22419 0.90969 0.99139 1.02153 0.89417 1.23182 0.99357 1.03424 0.89676 1.22373 0.98315 0.98571 1.03277 0.85112 1.19852 0.82364 0.85437 0.78992 1.90627 1.54990 1.50174 1.48928 1.45872 1.06880 1.23822 1.59151 1.19849 0.94714 0.83596 0.89743 1.21911 0.91906 1.02782 1.03007 1.21210 0.97948 0.89240 0.90388 1.42282 1.59175 1.24186 1.11477 1.19494 1.23235 1.04299 0.90548 0.92185 1.25412 1.01317 0.97227 1.02235 1.69769 1.41045 1.12748 1.37936 0.85296 0.77565 0.76931 0.80492 1.21266 1.21436 1.20417 1.22424 1.06988 0.98461 0.90690 1.22973 0.94875 1.02076 1.00926 1.23057 0.95043 1.03287 0.97049 0.94102 0.91394 0.91638 0.92913 0.89444 0.84888 0.88704 0.75790 0.89301 0.91002 0.93383 0.97017 0.95404 0.78975 0.93975 0.88417 0.89224 0.89591 0.87324 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.87 71.98 0.71 -2.12 16 2 C -0.09 -1.95 6.22 30.59 0.19 -1.76 16 3 C -0.13 -3.30 5.25 -10.79 -0.06 -3.36 16 4 H 0.09 2.79 7.60 -2.39 -0.02 2.77 16 5 C -0.12 -2.38 9.74 30.59 0.30 -2.08 16 6 C -0.20 -5.53 5.91 -11.54 -0.07 -5.60 16 7 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 8 C 0.55 18.97 4.64 87.66 0.41 19.38 16 9 O -0.57 -24.46 12.53 -3.02 -0.04 -24.49 16 10 N -0.71 -22.27 4.20 -422.92 -1.78 -24.04 16 11 C 0.21 6.97 0.55 3.61 0.00 6.98 16 12 C -0.14 -4.08 8.18 71.98 0.59 -3.49 16 13 C 0.14 6.38 4.83 86.38 0.42 6.79 16 14 N -0.73 -39.03 5.17 -343.43 -1.78 -40.81 16 15 C -0.24 -14.61 9.99 84.03 0.84 -13.77 16 16 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16 17 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 18 N -0.96 -59.67 13.06 21.65 0.28 -59.39 16 19 Si 0.97 48.33 29.55 68.60 2.03 50.36 16 20 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 21 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 C -0.17 -4.82 4.86 -10.79 -0.05 -4.87 16 24 C -0.17 -4.50 8.53 30.62 0.26 -4.24 16 25 C -0.15 -3.09 9.68 30.62 0.30 -2.80 16 26 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.42 7.88 -2.39 -0.02 1.41 16 31 H 0.13 1.80 8.03 -2.38 -0.02 1.78 16 32 H 0.09 1.96 7.65 -2.39 -0.02 1.94 16 33 H 0.41 10.74 8.48 -92.71 -0.79 9.95 16 34 H 0.09 1.95 6.89 -2.38 -0.02 1.93 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.05 1.67 6.86 -2.39 -0.02 1.65 16 37 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.03 1.46 5.72 -2.39 -0.01 1.44 16 39 H 0.38 20.57 6.35 -92.71 -0.59 19.98 16 40 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.10 2.98 8.06 -2.39 -0.02 2.96 16 42 H 0.09 2.44 4.53 -2.39 -0.01 2.43 16 43 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.11 1.93 7.17 -2.39 -0.02 1.92 16 Total: -1.00 -72.95 354.24 2.63 -70.32 By element: Atomic # 1 Polarization: 43.07 SS G_CDS: -0.39 Total: 42.68 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 4.30 Total: -14.62 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -3.27 Total: -124.24 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.04 Total: -24.49 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -72.95 2.63 -70.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732249062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.012 kcal (2) G-P(sol) polarization free energy of solvation -72.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds