Wall clock time and date at job start Tue Mar 31 2020 01:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46935 * 2 1 4 4 C 1.53001 * 109.47350 * 120.00419 * 2 1 3 5 5 H 1.08995 * 109.46954 * 299.99758 * 4 2 1 6 6 C 1.52999 * 109.46922 * 180.02562 * 4 2 1 7 7 N 1.46502 * 109.46835 * 185.00059 * 6 4 2 8 8 C 1.34774 * 119.99777 * 179.97438 * 7 6 4 9 9 O 1.21286 * 120.00436 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00074 * 179.97438 * 8 7 6 11 11 C 1.53003 * 119.30016 * 250.23335 * 10 8 7 12 12 C 1.52996 * 60.37825 * 248.69197 * 11 10 8 13 13 H 1.08996 * 119.30467 * 111.30589 * 12 11 10 14 14 C 1.54270 * 118.19575 * 266.38421 * 12 11 10 15 15 C 1.54886 * 104.19653 * 87.78764 * 14 12 11 16 16 C 1.54267 * 117.41194 * 44.56906 * 10 8 7 17 17 N 1.46499 * 109.46887 * 59.99947 * 4 2 1 18 18 C 1.36935 * 119.99942 * 274.99702 * 17 4 2 19 19 H 1.07999 * 120.00083 * 0.02562 * 18 17 4 20 20 C 1.38812 * 119.99632 * 180.02562 * 18 17 4 21 21 N 1.31617 * 120.00227 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99548 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47399 * 299.99577 * 22 20 18 25 25 H 1.48498 * 109.47295 * 60.00184 * 22 20 18 26 26 H 1.09000 * 109.46570 * 299.99463 * 1 2 3 27 27 H 1.08998 * 109.47256 * 59.99696 * 1 2 3 28 28 H 1.09005 * 109.46741 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46981 * 240.00748 * 2 1 3 30 30 H 1.08996 * 109.46814 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47130 * 300.00695 * 3 2 1 32 32 H 1.09000 * 109.46777 * 60.00101 * 3 2 1 33 33 H 1.08999 * 109.47225 * 304.99803 * 6 4 2 34 34 H 1.09000 * 109.47487 * 64.99480 * 6 4 2 35 35 H 0.96996 * 119.99843 * 359.97438 * 7 6 4 36 36 H 1.08999 * 117.45643 * 356.28741 * 11 10 8 37 37 H 1.08995 * 117.46138 * 141.08894 * 11 10 8 38 38 H 1.09000 * 110.48439 * 206.46594 * 14 12 11 39 39 H 1.08995 * 110.48354 * 329.10530 * 14 12 11 40 40 H 1.08998 * 110.75568 * 80.37257 * 15 14 12 41 41 H 1.08999 * 110.75632 * 203.55377 * 15 14 12 42 42 H 1.08999 * 110.48765 * 235.05003 * 16 10 8 43 43 H 1.08994 * 110.48601 * 357.69899 * 16 10 8 44 44 H 0.96999 * 119.99980 * 95.00771 * 17 4 2 45 45 H 0.97000 * 120.00284 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2076 2.1392 6 6 3.5701 -0.7207 1.2494 7 7 4.0585 -1.5130 2.3808 8 6 5.3836 -1.6543 2.5824 9 8 6.1717 -1.1258 1.8270 10 6 5.8861 -2.4688 3.7464 11 6 6.5613 -1.7584 4.9214 12 6 7.3920 -2.6555 4.0016 13 1 8.1379 -2.2040 3.3476 14 6 7.5906 -4.1306 4.4072 15 6 6.3667 -4.8598 3.7995 16 6 5.2030 -3.8265 4.0107 17 7 1.5518 -2.1025 1.2491 18 6 0.3103 -2.3898 1.7503 19 1 -0.3091 -1.5981 2.1453 20 6 -0.1522 -3.6987 1.7506 21 7 0.6024 -4.6634 1.2687 22 14 -1.8461 -4.0904 2.4337 23 1 -2.1003 -5.5491 2.3201 24 1 -1.9095 -3.6873 3.8616 25 1 -2.8748 -3.3467 1.6632 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.9338 -1.1547 0.3180 34 1 3.9331 0.3031 1.3392 35 1 3.4282 -1.9360 2.9847 36 1 6.7086 -0.6815 4.8401 37 1 6.3455 -2.1285 5.9236 38 1 8.5161 -4.5212 3.9843 39 1 7.5940 -4.2306 5.4926 40 1 6.5220 -5.0568 2.7387 41 1 6.1626 -5.7858 4.3369 42 1 4.8345 -3.8752 5.0353 43 1 4.3896 -3.9883 3.3035 44 1 2.1079 -2.8136 0.8941 45 1 1.4815 -4.4598 0.9130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732561998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:25 Heat of formation + Delta-G solvation = -19.819111 kcal Electronic energy + Delta-G solvation = -22926.510290 eV Core-core repulsion = 19751.128233 eV Total energy + Delta-G solvation = -3175.382058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35127 -38.26502 -37.07998 -33.89583 -33.44662 -31.55480 -30.33149 -28.84709 -27.56028 -26.07099 -23.98951 -23.05347 -22.26764 -21.38879 -20.30457 -19.65728 -18.73764 -17.48803 -16.99756 -15.79295 -15.28157 -14.97429 -14.85488 -14.27352 -14.03875 -13.66855 -13.56054 -13.33284 -13.12786 -13.06468 -12.91940 -12.21610 -11.97503 -11.73896 -11.66604 -11.21196 -11.14364 -11.10662 -10.97925 -10.91815 -10.80573 -10.42040 -10.37569 -10.17535 -10.08083 -9.90583 -9.70330 -9.42148 -9.22472 -8.93061 -8.64673 -7.10903 -6.13862 -3.15390 2.76567 3.46202 3.48030 3.50480 3.67609 3.68153 4.41965 4.60273 4.61244 4.76279 5.03847 5.16710 5.26758 5.31091 5.33441 5.39551 5.48983 5.49946 5.58120 5.62087 5.68205 5.71429 5.82254 5.82836 5.88696 5.94811 6.05483 6.12764 6.15803 6.17123 6.17488 6.31013 6.33727 6.37715 6.47956 6.56293 6.62954 6.88903 7.00266 7.25460 7.76881 7.92845 8.56363 8.69827 9.14664 10.01486 10.16737 11.33042 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.005634 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.047077 B = 4968.460058 C = 6564.189696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.176 3.824 5 H 0.054 0.946 6 C 0.112 3.888 7 N -0.708 5.708 8 C 0.552 3.448 9 O -0.556 6.556 10 C -0.174 4.174 11 C -0.126 4.126 12 C -0.129 4.129 13 H 0.117 0.883 14 C -0.095 4.095 15 C -0.121 4.121 16 C -0.088 4.088 17 N -0.732 5.732 18 C -0.327 4.327 19 H 0.067 0.933 20 C -0.042 4.042 21 N -0.941 5.941 22 Si 1.075 2.925 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.296 1.296 26 H 0.040 0.960 27 H 0.031 0.969 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.410 0.590 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.367 0.633 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.500 5.163 5.946 12.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.065 3.935 5 H 0.072 0.928 6 C -0.012 4.012 7 N -0.359 5.359 8 C 0.338 3.662 9 O -0.435 6.435 10 C -0.178 4.178 11 C -0.163 4.163 12 C -0.147 4.147 13 H 0.135 0.865 14 C -0.133 4.133 15 C -0.159 4.159 16 C -0.126 4.126 17 N -0.374 5.374 18 C -0.457 4.457 19 H 0.085 0.915 20 C -0.240 4.240 21 N -0.586 5.586 22 Si 0.906 3.094 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.223 1.223 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.247 0.753 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.201 0.799 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.774 4.450 5.784 11.412 hybrid contribution 0.800 1.029 -0.321 1.343 sum 9.575 5.479 5.463 12.310 Atomic orbital electron populations 1.21809 0.94778 1.03948 0.98973 1.21718 0.97050 0.94453 0.99837 1.21937 1.00453 0.97275 1.00995 1.20476 0.89153 0.87735 0.96096 0.92787 1.21756 0.95680 0.94949 0.88838 1.45930 1.06591 1.52672 1.30703 1.19320 0.82412 0.79889 0.84562 1.90647 1.55884 1.49583 1.47423 1.22386 0.97756 0.99132 0.98484 1.23083 1.00526 0.98595 0.94107 1.23331 0.92458 0.96371 1.02588 0.86496 1.21979 0.98604 0.92199 1.00501 1.23018 0.93667 0.97836 1.01357 1.22336 0.97614 0.90106 1.02502 1.42454 1.18294 1.01999 1.74681 1.19981 0.93622 0.95211 1.36928 0.91509 1.25673 1.05623 0.91472 1.01263 1.70886 1.11357 1.33200 1.43172 0.83306 0.74599 0.76041 0.75456 1.21159 1.22345 1.22304 0.94044 0.95016 0.89484 0.92105 0.93083 0.93478 0.93156 0.92118 0.91596 0.75332 0.88206 0.88141 0.91055 0.91199 0.91167 0.91042 0.90709 0.89935 0.79911 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.26 37.16 0.31 -2.21 16 2 C -0.11 -1.88 2.69 -90.61 -0.24 -2.13 16 3 C -0.15 -2.14 8.84 37.16 0.33 -1.81 16 4 C 0.18 3.28 2.18 -67.93 -0.15 3.13 16 5 H 0.05 1.04 8.08 -51.93 -0.42 0.63 16 6 C 0.11 1.96 4.73 -4.04 -0.02 1.94 16 7 N -0.71 -12.17 5.21 -60.29 -0.31 -12.49 16 8 C 0.55 9.60 7.42 -10.99 -0.08 9.51 16 9 O -0.56 -11.28 16.79 5.55 0.09 -11.18 16 10 C -0.17 -2.46 2.63 -154.54 -0.41 -2.87 16 11 C -0.13 -1.46 9.85 -26.73 -0.26 -1.72 16 12 C -0.13 -1.59 6.54 -89.50 -0.59 -2.18 16 13 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 14 C -0.10 -0.99 6.63 -25.07 -0.17 -1.16 16 15 C -0.12 -1.43 6.96 -23.54 -0.16 -1.59 16 16 C -0.09 -1.18 6.34 -23.88 -0.15 -1.33 16 17 N -0.73 -16.44 4.44 -53.43 -0.24 -16.67 16 18 C -0.33 -8.25 7.57 -15.06 -0.11 -8.37 16 19 H 0.07 1.68 7.39 -52.49 -0.39 1.30 16 20 C -0.04 -1.14 5.50 -17.43 -0.10 -1.24 16 21 N -0.94 -27.41 13.70 55.49 0.76 -26.65 16 22 Si 1.07 24.69 29.92 -169.99 -5.09 19.61 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.30 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.30 -6.56 7.11 56.52 0.40 -6.15 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 1.89 6.01 -51.93 -0.31 1.58 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.09 6.71 -51.93 -0.35 0.75 16 35 H 0.41 7.18 7.61 -40.82 -0.31 6.87 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.29 7.56 -51.93 -0.39 0.90 16 44 H 0.37 8.84 6.63 -40.82 -0.27 8.57 16 45 H 0.26 7.37 6.77 -40.82 -0.28 7.09 16 LS Contribution 354.82 15.07 5.35 5.35 Total: -1.00 -29.28 354.82 -9.01 -38.29 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -7.77 Total: 15.77 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -1.80 Total: -12.02 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.21 Total: -55.81 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.09 Total: 19.61 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.28 -9.01 -38.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732561998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.471 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds