Wall clock time and date at job start Tue Mar 31 2020 01:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46935 * 2 1 4 4 C 1.53001 * 109.47350 * 120.00419 * 2 1 3 5 5 H 1.08995 * 109.46954 * 299.99758 * 4 2 1 6 6 C 1.52999 * 109.46922 * 180.02562 * 4 2 1 7 7 N 1.46502 * 109.46835 * 185.00059 * 6 4 2 8 8 C 1.34774 * 119.99777 * 179.97438 * 7 6 4 9 9 O 1.21286 * 120.00436 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00074 * 179.97438 * 8 7 6 11 11 C 1.53003 * 119.30016 * 250.23335 * 10 8 7 12 12 C 1.52996 * 60.37825 * 248.69197 * 11 10 8 13 13 H 1.08996 * 119.30467 * 111.30589 * 12 11 10 14 14 C 1.54270 * 118.19575 * 266.38421 * 12 11 10 15 15 C 1.54886 * 104.19653 * 87.78764 * 14 12 11 16 16 C 1.54267 * 117.41194 * 44.56906 * 10 8 7 17 17 N 1.46499 * 109.46887 * 59.99947 * 4 2 1 18 18 C 1.36935 * 119.99942 * 274.99702 * 17 4 2 19 19 H 1.07999 * 120.00083 * 0.02562 * 18 17 4 20 20 C 1.38812 * 119.99632 * 180.02562 * 18 17 4 21 21 N 1.31617 * 120.00227 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99548 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47399 * 299.99577 * 22 20 18 25 25 H 1.48498 * 109.47295 * 60.00184 * 22 20 18 26 26 H 1.09000 * 109.46570 * 299.99463 * 1 2 3 27 27 H 1.08998 * 109.47256 * 59.99696 * 1 2 3 28 28 H 1.09005 * 109.46741 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46981 * 240.00748 * 2 1 3 30 30 H 1.08996 * 109.46814 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47130 * 300.00695 * 3 2 1 32 32 H 1.09000 * 109.46777 * 60.00101 * 3 2 1 33 33 H 1.08999 * 109.47225 * 304.99803 * 6 4 2 34 34 H 1.09000 * 109.47487 * 64.99480 * 6 4 2 35 35 H 0.96996 * 119.99843 * 359.97438 * 7 6 4 36 36 H 1.08999 * 117.45643 * 356.28741 * 11 10 8 37 37 H 1.08995 * 117.46138 * 141.08894 * 11 10 8 38 38 H 1.09000 * 110.48439 * 206.46594 * 14 12 11 39 39 H 1.08995 * 110.48354 * 329.10530 * 14 12 11 40 40 H 1.08998 * 110.75568 * 80.37257 * 15 14 12 41 41 H 1.08999 * 110.75632 * 203.55377 * 15 14 12 42 42 H 1.08999 * 110.48765 * 235.05003 * 16 10 8 43 43 H 1.08994 * 110.48601 * 357.69899 * 16 10 8 44 44 H 0.96999 * 119.99980 * 95.00771 * 17 4 2 45 45 H 0.97000 * 120.00284 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2076 2.1392 6 6 3.5701 -0.7207 1.2494 7 7 4.0585 -1.5130 2.3808 8 6 5.3836 -1.6543 2.5824 9 8 6.1717 -1.1258 1.8270 10 6 5.8861 -2.4688 3.7464 11 6 6.5613 -1.7584 4.9214 12 6 7.3920 -2.6555 4.0016 13 1 8.1379 -2.2040 3.3476 14 6 7.5906 -4.1306 4.4072 15 6 6.3667 -4.8598 3.7995 16 6 5.2030 -3.8265 4.0107 17 7 1.5518 -2.1025 1.2491 18 6 0.3103 -2.3898 1.7503 19 1 -0.3091 -1.5981 2.1453 20 6 -0.1522 -3.6987 1.7506 21 7 0.6024 -4.6634 1.2687 22 14 -1.8461 -4.0904 2.4337 23 1 -2.1003 -5.5491 2.3201 24 1 -1.9095 -3.6873 3.8616 25 1 -2.8748 -3.3467 1.6632 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.9338 -1.1547 0.3180 34 1 3.9331 0.3031 1.3392 35 1 3.4282 -1.9360 2.9847 36 1 6.7086 -0.6815 4.8401 37 1 6.3455 -2.1285 5.9236 38 1 8.5161 -4.5212 3.9843 39 1 7.5940 -4.2306 5.4926 40 1 6.5220 -5.0568 2.7387 41 1 6.1626 -5.7858 4.3369 42 1 4.8345 -3.8752 5.0353 43 1 4.3896 -3.9883 3.3035 44 1 2.1079 -2.8136 0.8941 45 1 1.4815 -4.4598 0.9130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732561998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:24 Heat of formation + Delta-G solvation = -36.972837 kcal Electronic energy + Delta-G solvation = -22927.254132 eV Core-core repulsion = 19751.128233 eV Total energy + Delta-G solvation = -3176.125899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55045 -39.59944 -38.56297 -35.46458 -35.17758 -32.51920 -32.06371 -30.17941 -28.85848 -27.45747 -25.69096 -24.50422 -23.46589 -22.72506 -21.32405 -21.04237 -20.09834 -19.35859 -18.22925 -17.22722 -16.73897 -16.51470 -16.13090 -15.67242 -15.53164 -15.41936 -14.99701 -14.51980 -14.41272 -14.15247 -13.93721 -13.63435 -13.57628 -12.93599 -12.87899 -12.80708 -12.67856 -12.49837 -12.11063 -12.05651 -11.96295 -11.93963 -11.89522 -11.59821 -11.52574 -11.38076 -11.17292 -10.87897 -10.72154 -10.67980 -10.10478 -9.05944 -8.26305 -5.21826 1.45421 1.61860 1.69849 1.85457 2.15920 2.60757 2.75061 3.44044 3.48264 3.60205 3.66811 3.71806 3.80571 3.89674 4.19491 4.20297 4.21648 4.32780 4.37501 4.44003 4.53388 4.57030 4.62328 4.71975 4.76756 4.83625 4.87678 4.93275 4.95633 4.97945 5.07226 5.10353 5.15607 5.16871 5.23912 5.24501 5.41647 5.44473 5.54159 5.68288 5.72701 6.50740 6.58057 7.13671 7.16648 8.04204 8.17678 9.23732 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.005634 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.047077 B = 4968.460058 C = 6564.189696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 C -0.140 4.140 4 C 0.179 3.821 5 H 0.054 0.946 6 C 0.121 3.879 7 N -0.708 5.708 8 C 0.547 3.453 9 O -0.590 6.590 10 C -0.198 4.198 11 C -0.105 4.105 12 C -0.126 4.126 13 H 0.105 0.895 14 C -0.086 4.086 15 C -0.122 4.122 16 C -0.085 4.085 17 N -0.738 5.738 18 C -0.304 4.304 19 H 0.070 0.930 20 C -0.102 4.102 21 N -0.978 5.978 22 Si 1.118 2.882 23 H -0.301 1.301 24 H -0.278 1.278 25 H -0.283 1.283 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.409 0.591 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.357 0.643 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.815 6.433 7.622 13.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.128 4.128 3 C -0.198 4.198 4 C 0.070 3.930 5 H 0.072 0.928 6 C -0.003 4.003 7 N -0.357 5.357 8 C 0.335 3.665 9 O -0.472 6.472 10 C -0.202 4.202 11 C -0.142 4.142 12 C -0.145 4.145 13 H 0.123 0.877 14 C -0.123 4.123 15 C -0.159 4.159 16 C -0.123 4.123 17 N -0.379 5.379 18 C -0.435 4.435 19 H 0.088 0.912 20 C -0.293 4.293 21 N -0.626 5.626 22 Si 0.945 3.055 23 H -0.227 1.227 24 H -0.204 1.204 25 H -0.210 1.210 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.245 0.755 36 H 0.118 0.882 37 H 0.146 0.854 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.189 0.811 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.091 5.779 7.468 13.108 hybrid contribution 0.730 0.736 -0.896 1.370 sum 9.821 6.515 6.572 13.494 Atomic orbital electron populations 1.21708 0.95220 1.01710 1.00302 1.21624 0.96559 0.96402 0.98189 1.21844 1.00804 0.94808 1.02315 1.20595 0.89837 0.85783 0.96764 0.92783 1.21636 0.94655 0.95611 0.88446 1.45953 1.06828 1.52523 1.30424 1.19933 0.81933 0.79524 0.85078 1.90617 1.56483 1.51242 1.48880 1.22390 0.99253 0.99623 0.98886 1.23221 0.98047 0.98535 0.94363 1.23467 0.90723 0.97855 1.02422 0.87712 1.21984 0.98216 0.90234 1.01892 1.23032 0.93813 0.98331 1.00738 1.22301 0.97219 0.90333 1.02443 1.42558 1.17480 1.03408 1.74461 1.20192 0.94060 0.94866 1.34421 0.91179 1.26823 1.08193 0.92001 1.02330 1.70991 1.11460 1.34101 1.46079 0.82725 0.71746 0.75027 0.76032 1.22716 1.20430 1.20966 0.93476 0.92937 0.93344 0.93399 0.92475 0.91849 0.92159 0.93676 0.90148 0.75505 0.88241 0.85405 0.89854 0.88804 0.92967 0.89381 0.89044 0.93203 0.81111 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 8.26 71.98 0.59 -4.08 16 2 C -0.11 -3.58 2.69 -10.79 -0.03 -3.61 16 3 C -0.14 -3.68 8.84 71.98 0.64 -3.04 16 4 C 0.18 6.63 2.18 44.99 0.10 6.73 16 5 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 6 C 0.12 4.24 4.73 86.38 0.41 4.64 16 7 N -0.71 -24.73 5.21 -463.06 -2.41 -27.14 16 8 C 0.55 19.26 7.42 87.66 0.65 19.91 16 9 O -0.59 -24.31 16.79 -3.05 -0.05 -24.37 16 10 C -0.20 -5.47 2.63 -52.20 -0.14 -5.60 16 11 C -0.10 -2.18 9.85 30.59 0.30 -1.88 16 12 C -0.13 -2.91 6.54 -10.07 -0.07 -2.98 16 13 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 14 C -0.09 -1.57 6.63 31.67 0.21 -1.36 16 15 C -0.12 -2.73 6.96 32.66 0.23 -2.50 16 16 C -0.09 -2.25 6.34 32.44 0.21 -2.04 16 17 N -0.74 -33.80 4.44 -322.95 -1.43 -35.24 16 18 C -0.30 -15.46 7.57 84.03 0.64 -14.82 16 19 H 0.07 3.49 7.39 -2.91 -0.02 3.47 16 20 C -0.10 -5.57 5.50 84.86 0.47 -5.10 16 21 N -0.98 -58.67 13.70 21.65 0.30 -58.37 16 22 Si 1.12 50.05 29.92 68.60 2.05 52.10 16 23 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 28 H 0.05 2.09 6.01 -2.38 -0.01 2.07 16 29 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.06 1.44 6.54 -2.39 -0.02 1.42 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.60 6.71 -2.39 -0.02 2.58 16 35 H 0.41 14.61 7.61 -92.71 -0.71 13.91 16 36 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.05 1.62 7.56 -2.39 -0.02 1.60 16 44 H 0.36 17.91 6.63 -92.71 -0.61 17.30 16 45 H 0.24 14.62 6.77 -92.71 -0.63 13.99 16 Total: -1.00 -64.44 354.82 2.45 -61.99 By element: Atomic # 1 Polarization: 46.98 SS G_CDS: -0.20 Total: 46.77 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 4.20 Total: -15.74 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -3.55 Total: -120.75 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.37 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.10 kcal Total: -64.44 2.45 -61.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732561998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.016 kcal (2) G-P(sol) polarization free energy of solvation -64.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds