Wall clock time and date at job start Tue Mar 31 2020 01:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47150 * 2 1 4 4 C 1.52998 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.09004 * 115.56614 * 29.30601 * 4 3 2 6 6 C 1.53078 * 117.48988 * 243.60172 * 4 3 2 7 7 C 1.52997 * 59.98427 * 252.51533 * 6 4 3 8 8 H 1.09000 * 117.50482 * 107.50178 * 7 6 4 9 9 C 1.50703 * 117.49936 * 252.50180 * 7 6 4 10 10 O 1.21281 * 120.00108 * 68.74717 * 9 7 6 11 11 N 1.34775 * 120.00136 * 248.74217 * 9 7 6 12 12 C 1.46500 * 120.00078 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.46842 * 325.00009 * 12 11 9 14 14 C 1.53007 * 109.47011 * 205.00276 * 12 11 9 15 15 N 1.46504 * 109.46984 * 54.99811 * 14 12 11 16 16 C 1.36930 * 119.99684 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00111 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99842 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00198 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00119 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47027 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47386 * 120.00092 * 20 18 16 23 23 H 1.48502 * 109.47059 * 240.00177 * 20 18 16 24 24 C 1.52989 * 109.47325 * 85.00276 * 12 11 9 25 25 C 1.53000 * 117.50008 * 8.62078 * 24 12 11 26 26 C 1.52997 * 60.00347 * 252.51154 * 25 24 12 27 27 H 1.09000 * 109.46971 * 60.00289 * 1 2 3 28 28 H 1.09001 * 109.47183 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47308 * 299.99933 * 1 2 3 30 30 H 1.09000 * 109.46860 * 239.99444 * 2 1 3 31 31 H 1.09004 * 109.47033 * 120.00466 * 2 1 3 32 32 H 1.08997 * 109.46872 * 60.00326 * 3 2 1 33 33 H 1.09000 * 109.46948 * 299.99725 * 3 2 1 34 34 H 1.09006 * 117.51051 * 145.03889 * 6 4 3 35 35 H 1.08995 * 117.51484 * 359.97438 * 6 4 3 36 36 H 0.97002 * 119.99920 * 0.02562 * 11 9 7 37 37 H 1.08996 * 109.47184 * 174.99976 * 14 12 11 38 38 H 1.08994 * 109.46789 * 295.00273 * 14 12 11 39 39 H 0.97003 * 119.99982 * 0.02562 * 15 14 12 40 40 H 0.97003 * 120.00212 * 179.97438 * 19 18 16 41 41 H 1.09004 * 115.56709 * 154.30812 * 24 12 11 42 42 H 1.09002 * 117.49696 * 0.02562 * 25 24 12 43 43 H 1.09002 * 117.50343 * 145.02258 * 25 24 12 44 44 H 1.08999 * 117.49685 * 252.51237 * 26 25 24 45 45 H 1.08999 * 117.52022 * 107.47599 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 4.0402 0.5850 -0.4823 6 6 4.2772 2.0460 1.2155 7 6 4.2764 2.7944 -0.1189 8 1 3.6512 3.6839 -0.1968 9 6 5.5690 2.8388 -0.8926 10 8 6.0104 1.8268 -1.3943 11 7 6.2343 4.0032 -1.0270 12 6 7.4905 4.0464 -1.7795 13 1 8.0390 3.1172 -1.6246 14 6 8.3362 5.2251 -1.2930 15 7 8.5264 5.1243 0.1561 16 6 9.2565 6.0747 0.8184 17 1 9.6917 6.8988 0.2726 18 6 9.4373 5.9790 2.1914 19 7 8.9073 4.9745 2.8565 20 14 10.4327 7.2759 3.0952 21 1 10.9172 8.2919 2.1266 22 1 9.5783 7.9329 4.1166 23 1 11.5945 6.6335 3.7606 24 6 7.1869 4.2171 -3.2693 25 6 5.7385 4.5090 -3.6662 26 6 6.3463 3.1335 -3.9477 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.2126 1.5856 1.5338 35 1 3.6524 2.4433 2.0154 36 1 5.8814 4.8126 -0.6254 37 1 9.3065 5.2053 -1.7891 38 1 7.8266 6.1594 -1.5284 39 1 8.1358 4.3839 0.6463 40 1 9.0340 4.9074 3.8159 41 1 7.9746 4.6860 -3.8591 42 1 5.0018 4.5799 -2.8659 43 1 5.5731 5.1699 -4.5171 44 1 6.5810 2.8895 -4.9837 45 1 6.0100 2.2988 -3.3326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733184067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:52 Heat of formation + Delta-G solvation = 7.373342 kcal Electronic energy + Delta-G solvation = -22252.877221 eV Core-core repulsion = 19078.674316 eV Total energy + Delta-G solvation = -3174.202905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.13209 -38.03133 -36.43445 -34.87701 -33.91431 -33.19278 -31.13167 -28.39696 -27.46122 -24.37178 -23.62537 -22.21125 -22.04763 -21.46154 -20.66981 -19.87545 -19.57024 -17.40687 -16.84304 -15.94245 -15.77520 -15.33864 -14.86274 -14.60098 -14.21224 -13.99332 -13.46380 -13.36654 -13.20038 -12.87028 -12.82407 -12.30127 -12.06077 -12.03266 -11.61155 -11.42377 -11.34981 -11.18911 -11.08969 -10.94757 -10.89584 -10.84335 -10.21467 -10.13976 -10.05463 -9.97327 -9.79570 -9.55778 -9.42026 -8.92607 -8.58481 -6.96583 -5.78964 -3.08598 2.79626 3.40400 3.42658 3.47310 3.49390 3.95213 4.09997 4.54250 4.58587 4.80786 4.84166 4.93548 5.02686 5.04787 5.16822 5.22192 5.23998 5.27658 5.42901 5.53693 5.58405 5.61189 5.66660 5.72318 5.79434 5.83974 5.86742 5.91668 6.02762 6.05370 6.05935 6.12533 6.15033 6.25295 6.34543 6.36691 6.51052 6.55683 6.71320 6.98589 7.67778 7.92263 8.38780 8.60185 9.50800 10.06726 10.42414 11.43351 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.004269 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.712471 B = 6557.146267 C = 8082.782042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.121 4.121 5 H 0.116 0.884 6 C -0.143 4.143 7 C -0.188 4.188 8 H 0.119 0.881 9 C 0.546 3.454 10 O -0.546 6.546 11 N -0.704 5.704 12 C 0.168 3.832 13 H 0.090 0.910 14 C 0.148 3.852 15 N -0.731 5.731 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.161 4.161 25 C -0.177 4.177 26 C -0.187 4.187 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.405 0.595 37 H 0.033 0.967 38 H 0.026 0.974 39 H 0.386 0.614 40 H 0.254 0.746 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.750 -5.684 -8.731 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.140 4.140 5 H 0.134 0.866 6 C -0.181 4.181 7 C -0.210 4.210 8 H 0.137 0.863 9 C 0.332 3.668 10 O -0.425 6.425 11 N -0.354 5.354 12 C 0.063 3.937 13 H 0.108 0.892 14 C 0.020 3.980 15 N -0.376 5.376 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.578 5.578 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.180 4.180 25 C -0.214 4.214 26 C -0.224 4.224 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.240 0.760 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.220 0.780 40 H 0.064 0.936 41 H 0.126 0.874 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.308 -6.236 -9.056 18.045 hybrid contribution 0.406 1.096 0.882 1.465 sum -13.902 -5.140 -8.174 16.926 Atomic orbital electron populations 1.21783 0.96037 1.01490 1.01711 1.21500 0.95462 0.96678 1.02334 1.21230 0.92248 0.97148 1.02036 1.22433 0.94303 0.95518 1.01743 0.86594 1.23100 1.03129 1.01670 0.90158 1.22270 0.97814 0.98362 1.02506 0.86344 1.19570 0.84584 0.83279 0.79327 1.90592 1.68835 1.34098 1.48964 1.45904 1.24172 1.10976 1.54320 1.20735 0.84446 1.01000 0.87485 0.89248 1.20909 0.95945 0.94013 0.87148 1.42354 1.63624 1.30612 1.01034 1.19256 1.24771 1.02904 0.90309 0.91107 1.24747 1.01199 0.98384 0.96521 1.69678 1.49228 1.31481 1.07456 0.86122 0.79514 0.80819 0.79738 1.20576 1.21877 1.21881 1.22700 0.94669 1.04258 0.96406 1.22866 0.96299 0.99480 1.02778 1.23324 1.04200 0.93705 1.01155 0.92834 0.92862 0.92799 0.91870 0.91780 0.91687 0.91613 0.87993 0.87966 0.75990 0.94895 0.95633 0.77978 0.93565 0.87362 0.89027 0.89602 0.89846 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.05 5.89 -26.73 -0.16 -1.21 16 3 C -0.09 -0.84 5.50 -26.73 -0.15 -0.99 16 4 C -0.12 -1.45 5.25 -90.58 -0.48 -1.92 16 5 H 0.12 1.56 7.60 -51.93 -0.39 1.16 16 6 C -0.14 -1.84 9.88 -26.69 -0.26 -2.11 16 7 C -0.19 -2.49 5.91 -91.77 -0.54 -3.03 16 8 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 9 C 0.55 8.89 6.45 -10.98 -0.07 8.82 16 10 O -0.55 -10.33 13.29 5.56 0.07 -10.25 16 11 N -0.70 -11.36 3.06 -53.81 -0.16 -11.52 16 12 C 0.17 2.89 2.59 -67.93 -0.18 2.71 16 13 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 14 C 0.15 2.91 5.80 -4.04 -0.02 2.88 16 15 N -0.73 -18.11 5.43 -59.91 -0.33 -18.44 16 16 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 20 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 C -0.16 -2.35 5.71 -90.62 -0.52 -2.86 16 25 C -0.18 -2.33 9.73 -26.73 -0.26 -2.59 16 26 C -0.19 -2.67 9.82 -26.73 -0.26 -2.93 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.57 7.88 -51.93 -0.41 0.16 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.10 1.14 8.03 -51.93 -0.42 0.73 16 36 H 0.41 6.32 8.60 -40.82 -0.35 5.97 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.39 10.21 7.33 -40.82 -0.30 9.91 16 40 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.11 1.46 8.11 -51.93 -0.42 1.04 16 42 H 0.09 1.22 6.67 -51.93 -0.35 0.88 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.12 1.93 5.02 -51.93 -0.26 1.67 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -30.57 364.31 -9.91 -40.48 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -7.91 Total: 15.38 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -2.77 Total: -11.24 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.23 Total: -57.04 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.57 -9.91 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733184067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.854 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds