Wall clock time and date at job start Tue Mar 31 2020 01:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47150 * 2 1 4 4 C 1.52998 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.09004 * 115.56614 * 29.30601 * 4 3 2 6 6 C 1.53078 * 117.48988 * 243.60172 * 4 3 2 7 7 C 1.52997 * 59.98427 * 252.51533 * 6 4 3 8 8 H 1.09000 * 117.50482 * 107.50178 * 7 6 4 9 9 C 1.50703 * 117.49936 * 252.50180 * 7 6 4 10 10 O 1.21281 * 120.00108 * 68.74717 * 9 7 6 11 11 N 1.34775 * 120.00136 * 248.74217 * 9 7 6 12 12 C 1.46500 * 120.00078 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.46842 * 325.00009 * 12 11 9 14 14 C 1.53007 * 109.47011 * 205.00276 * 12 11 9 15 15 N 1.46504 * 109.46984 * 54.99811 * 14 12 11 16 16 C 1.36930 * 119.99684 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00111 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99842 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00198 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00119 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47027 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47386 * 120.00092 * 20 18 16 23 23 H 1.48502 * 109.47059 * 240.00177 * 20 18 16 24 24 C 1.52989 * 109.47325 * 85.00276 * 12 11 9 25 25 C 1.53000 * 117.50008 * 8.62078 * 24 12 11 26 26 C 1.52997 * 60.00347 * 252.51154 * 25 24 12 27 27 H 1.09000 * 109.46971 * 60.00289 * 1 2 3 28 28 H 1.09001 * 109.47183 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47308 * 299.99933 * 1 2 3 30 30 H 1.09000 * 109.46860 * 239.99444 * 2 1 3 31 31 H 1.09004 * 109.47033 * 120.00466 * 2 1 3 32 32 H 1.08997 * 109.46872 * 60.00326 * 3 2 1 33 33 H 1.09000 * 109.46948 * 299.99725 * 3 2 1 34 34 H 1.09006 * 117.51051 * 145.03889 * 6 4 3 35 35 H 1.08995 * 117.51484 * 359.97438 * 6 4 3 36 36 H 0.97002 * 119.99920 * 0.02562 * 11 9 7 37 37 H 1.08996 * 109.47184 * 174.99976 * 14 12 11 38 38 H 1.08994 * 109.46789 * 295.00273 * 14 12 11 39 39 H 0.97003 * 119.99982 * 0.02562 * 15 14 12 40 40 H 0.97003 * 120.00212 * 179.97438 * 19 18 16 41 41 H 1.09004 * 115.56709 * 154.30812 * 24 12 11 42 42 H 1.09002 * 117.49696 * 0.02562 * 25 24 12 43 43 H 1.09002 * 117.50343 * 145.02258 * 25 24 12 44 44 H 1.08999 * 117.49685 * 252.51237 * 26 25 24 45 45 H 1.08999 * 117.52022 * 107.47599 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 4.0402 0.5850 -0.4823 6 6 4.2772 2.0460 1.2155 7 6 4.2764 2.7944 -0.1189 8 1 3.6512 3.6839 -0.1968 9 6 5.5690 2.8388 -0.8926 10 8 6.0104 1.8268 -1.3943 11 7 6.2343 4.0032 -1.0270 12 6 7.4905 4.0464 -1.7795 13 1 8.0390 3.1172 -1.6246 14 6 8.3362 5.2251 -1.2930 15 7 8.5264 5.1243 0.1561 16 6 9.2565 6.0747 0.8184 17 1 9.6917 6.8988 0.2726 18 6 9.4373 5.9790 2.1914 19 7 8.9073 4.9745 2.8565 20 14 10.4327 7.2759 3.0952 21 1 10.9172 8.2919 2.1266 22 1 9.5783 7.9329 4.1166 23 1 11.5945 6.6335 3.7606 24 6 7.1869 4.2171 -3.2693 25 6 5.7385 4.5090 -3.6662 26 6 6.3463 3.1335 -3.9477 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.2126 1.5856 1.5338 35 1 3.6524 2.4433 2.0154 36 1 5.8814 4.8126 -0.6254 37 1 9.3065 5.2053 -1.7891 38 1 7.8266 6.1594 -1.5284 39 1 8.1358 4.3839 0.6463 40 1 9.0340 4.9074 3.8159 41 1 7.9746 4.6860 -3.8591 42 1 5.0018 4.5799 -2.8659 43 1 5.5731 5.1699 -4.5171 44 1 6.5810 2.8895 -4.9837 45 1 6.0100 2.2988 -3.3326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733184067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:52 Heat of formation + Delta-G solvation = -9.541208 kcal Electronic energy + Delta-G solvation = -22253.610690 eV Core-core repulsion = 19078.674316 eV Total energy + Delta-G solvation = -3174.936374 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41276 -39.16487 -37.61494 -36.55778 -34.81777 -34.64630 -33.00249 -29.99737 -28.29966 -26.11843 -24.98672 -23.45276 -22.97690 -22.80567 -21.62750 -21.04103 -20.87476 -19.26841 -18.19944 -17.22404 -17.18251 -16.60260 -16.09991 -15.81680 -15.44439 -15.24183 -15.08237 -14.97167 -14.42730 -14.14442 -13.78599 -13.59937 -13.17376 -13.07662 -12.91971 -12.87656 -12.74270 -12.67029 -12.32067 -12.16710 -12.05086 -11.92846 -11.84086 -11.65381 -11.29599 -11.10603 -11.01138 -10.97828 -10.82450 -10.65857 -9.93907 -9.01858 -7.94438 -5.24257 1.48100 1.48957 1.53421 1.58817 2.17018 2.55404 2.88144 2.96330 3.39722 3.57180 3.67438 3.79831 3.88542 3.97523 4.09336 4.16169 4.19412 4.21890 4.30670 4.38574 4.44698 4.49091 4.63781 4.66242 4.82329 4.85436 4.88161 4.90152 4.95469 5.00247 5.05564 5.08043 5.14557 5.22343 5.26010 5.38086 5.38975 5.42596 5.50289 5.53433 5.61267 6.26018 6.61233 7.29964 7.33423 8.06044 8.30623 9.28635 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.004269 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.712471 B = 6557.146267 C = 8082.782042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.107 4.107 5 H 0.096 0.904 6 C -0.149 4.149 7 C -0.194 4.194 8 H 0.145 0.855 9 C 0.540 3.460 10 O -0.577 6.577 11 N -0.701 5.701 12 C 0.178 3.822 13 H 0.057 0.943 14 C 0.151 3.849 15 N -0.743 5.743 16 C -0.243 4.243 17 H 0.079 0.921 18 C -0.073 4.073 19 N -0.967 5.967 20 Si 0.973 3.027 21 H -0.265 1.265 22 H -0.292 1.292 23 H -0.297 1.297 24 C -0.168 4.168 25 C -0.159 4.159 26 C -0.190 4.190 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.409 0.591 37 H 0.036 0.964 38 H 0.041 0.959 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.124 0.876 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.059 -4.207 -9.667 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.120 4.120 4 C -0.125 4.125 5 H 0.114 0.886 6 C -0.186 4.186 7 C -0.214 4.214 8 H 0.162 0.838 9 C 0.328 3.672 10 O -0.458 6.458 11 N -0.350 5.350 12 C 0.073 3.927 13 H 0.075 0.925 14 C 0.024 3.976 15 N -0.386 5.386 16 C -0.375 4.375 17 H 0.096 0.904 18 C -0.266 4.266 19 N -0.617 5.617 20 Si 0.803 3.197 21 H -0.190 1.190 22 H -0.219 1.219 23 H -0.225 1.225 24 C -0.188 4.188 25 C -0.196 4.196 26 C -0.227 4.227 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.142 0.858 36 H 0.245 0.755 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.142 0.858 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.621 -4.732 -10.035 19.160 hybrid contribution 0.844 0.587 1.111 1.514 sum -14.777 -4.145 -8.924 17.753 Atomic orbital electron populations 1.21760 0.94780 1.02046 1.02170 1.21500 0.96530 0.96079 1.01943 1.21233 0.89871 0.97899 1.02995 1.22433 0.95913 0.93982 1.00220 0.88618 1.23126 1.02629 1.01971 0.90872 1.22354 0.96770 1.00146 1.02171 0.83780 1.20113 0.85400 0.82658 0.79016 1.90580 1.69887 1.35080 1.50290 1.45869 1.23692 1.11224 1.54237 1.20464 0.84406 0.98291 0.89544 0.92501 1.21022 0.96644 0.95557 0.84376 1.42523 1.63293 1.29737 1.03026 1.19654 1.24026 1.03124 0.90706 0.90357 1.25552 1.02924 1.00572 0.97529 1.69836 1.51091 1.33494 1.07309 0.85079 0.77631 0.78584 0.78455 1.18970 1.21923 1.22500 1.22619 0.96288 1.05437 0.94451 1.22950 0.94732 0.98693 1.03226 1.23259 1.04425 0.93452 1.01572 0.92421 0.92332 0.92269 0.92469 0.92102 0.90435 0.90813 0.90664 0.85778 0.75539 0.94644 0.94157 0.79378 0.94114 0.85841 0.89231 0.87151 0.88025 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.97 5.89 30.60 0.18 -1.79 16 3 C -0.08 -1.41 5.50 30.59 0.17 -1.25 16 4 C -0.11 -2.51 5.25 -10.77 -0.06 -2.56 16 5 H 0.10 2.67 7.60 -2.39 -0.02 2.65 16 6 C -0.15 -3.83 9.88 30.62 0.30 -3.53 16 7 C -0.19 -5.03 5.91 -11.54 -0.07 -5.10 16 8 H 0.14 2.97 8.14 -2.39 -0.02 2.95 16 9 C 0.54 17.91 6.45 87.66 0.57 18.48 16 10 O -0.58 -22.74 13.29 -3.03 -0.04 -22.78 16 11 N -0.70 -22.69 3.06 -442.53 -1.35 -24.04 16 12 C 0.18 6.15 2.59 44.99 0.12 6.27 16 13 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 14 C 0.15 5.84 5.80 86.38 0.50 6.35 16 15 N -0.74 -37.00 5.43 -343.44 -1.87 -38.86 16 16 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16 17 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 19 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 20 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 24 C -0.17 -4.69 5.71 -10.80 -0.06 -4.76 16 25 C -0.16 -3.82 9.73 30.59 0.30 -3.52 16 26 C -0.19 -5.21 9.82 30.60 0.30 -4.91 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.17 7.88 -2.39 -0.02 1.15 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.12 2.63 8.03 -2.39 -0.02 2.61 16 36 H 0.41 12.58 8.60 -92.71 -0.80 11.78 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.37 20.26 7.33 -92.71 -0.68 19.58 16 40 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.12 3.07 8.11 -2.38 -0.02 3.05 16 42 H 0.09 2.20 6.67 -2.39 -0.02 2.18 16 43 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.09 3.07 5.02 -2.39 -0.01 3.05 16 Total: -1.00 -66.10 364.31 2.81 -63.29 By element: Atomic # 1 Polarization: 47.38 SS G_CDS: -0.50 Total: 46.87 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 4.27 Total: -13.71 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -2.94 Total: -121.34 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.04 Total: -22.78 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -66.10 2.81 -63.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733184067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.748 kcal (2) G-P(sol) polarization free energy of solvation -66.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds