Wall clock time and date at job start Tue Mar 31 2020 01:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.54795 * 29.32827 * 4 3 2 6 6 C 1.53000 * 117.50165 * 243.62462 * 4 3 2 7 7 C 1.52994 * 59.99907 * 252.50793 * 6 4 3 8 8 H 1.09002 * 117.49788 * 107.49222 * 7 6 4 9 9 C 1.50701 * 117.51900 * 252.51694 * 7 6 4 10 10 O 1.21278 * 120.00254 * 68.62864 * 9 7 6 11 11 N 1.34782 * 119.99870 * 248.63484 * 9 7 6 12 12 C 1.46501 * 119.99727 * 180.02562 * 11 9 7 13 13 H 1.08995 * 109.47503 * 34.99503 * 12 11 9 14 14 C 1.53001 * 109.46959 * 154.99598 * 12 11 9 15 15 N 1.46493 * 109.47078 * 304.99445 * 14 12 11 16 16 C 1.36946 * 119.99966 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99761 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99934 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00358 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99891 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46862 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47213 * 120.00198 * 20 18 16 23 23 H 1.48502 * 109.46639 * 239.99627 * 20 18 16 24 24 C 1.53002 * 109.46816 * 274.98956 * 12 11 9 25 25 C 1.53003 * 117.49620 * 128.74657 * 24 12 11 26 26 C 1.53008 * 117.49513 * 60.09045 * 24 12 11 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 31 31 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 32 32 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 33 33 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 34 34 H 1.09001 * 117.49810 * 359.97438 * 6 4 3 35 35 H 1.08995 * 117.50134 * 145.01745 * 6 4 3 36 36 H 0.96997 * 120.00141 * 359.97438 * 11 9 7 37 37 H 1.09004 * 109.47152 * 64.99418 * 14 12 11 38 38 H 1.09006 * 109.47185 * 184.99381 * 14 12 11 39 39 H 0.97002 * 120.00271 * 0.02562 * 15 14 12 40 40 H 0.96997 * 120.00658 * 180.02562 * 19 18 16 41 41 H 1.08997 * 115.55313 * 274.42146 * 24 12 11 42 42 H 1.09001 * 117.50108 * 0.02562 * 25 24 12 43 43 H 1.08997 * 117.49668 * 145.02207 * 25 24 12 44 44 H 1.08997 * 117.49985 * 214.97842 * 26 24 12 45 45 H 1.08997 * 117.49776 * 359.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 4.0398 0.5853 -0.4827 6 6 4.2769 2.0453 1.2150 7 6 4.2763 2.7945 -0.1190 8 1 3.6511 3.6840 -0.1963 9 6 5.5685 2.8390 -0.8931 10 8 6.0106 1.8268 -1.3939 11 7 6.2330 4.0038 -1.0289 12 6 7.4888 4.0472 -1.7820 13 1 7.4375 3.3460 -2.6149 14 6 7.7125 5.4621 -2.3195 15 7 6.5467 5.8765 -3.1038 16 6 6.5191 7.1150 -3.6874 17 1 7.3571 7.7861 -3.5698 18 6 5.4142 7.5079 -4.4300 19 7 4.3927 6.6903 -4.5729 20 14 5.3769 9.1971 -5.2267 21 1 6.6376 9.9183 -4.9170 22 1 5.2400 9.0477 -6.6978 23 1 4.2232 9.9683 -4.6980 24 6 8.6488 3.6620 -0.8617 25 6 9.6038 2.5700 -1.3480 26 6 8.6112 2.2730 -0.2211 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.6520 2.4422 2.0150 35 1 5.2121 1.5845 1.5330 36 1 5.8792 4.8135 -0.6286 37 1 7.8524 6.1498 -1.4854 38 1 8.5995 5.4741 -2.9530 39 1 5.7939 5.2739 -3.2091 40 1 3.6207 6.9646 -5.0922 41 1 9.0727 4.4760 -0.2737 42 1 9.4059 2.1263 -2.3237 43 1 10.6559 2.6654 -1.0796 44 1 9.0107 2.1731 0.7880 45 1 7.7598 1.6338 -0.4551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733184068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:56 Heat of formation + Delta-G solvation = 3.026605 kcal Electronic energy + Delta-G solvation = -22115.121255 eV Core-core repulsion = 18940.729862 eV Total energy + Delta-G solvation = -3174.391393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.99657 -37.97222 -36.49670 -34.97920 -33.88791 -33.31416 -31.08103 -28.31137 -27.39733 -24.40273 -23.56481 -22.09281 -22.02932 -21.47931 -20.65801 -20.01470 -19.74094 -17.35517 -16.84800 -16.09539 -15.29325 -15.24844 -14.95623 -14.63219 -14.36455 -14.04228 -13.54574 -13.29885 -13.13591 -12.86597 -12.79440 -12.29163 -12.13233 -12.02881 -11.64326 -11.40409 -11.19795 -11.11468 -11.01729 -10.90647 -10.90142 -10.82990 -10.22382 -10.16099 -10.08871 -9.94478 -9.90625 -9.69260 -9.39198 -8.92683 -8.56192 -6.96974 -5.79148 -3.09049 2.79718 3.39112 3.41845 3.47259 3.49451 3.91618 4.13935 4.54948 4.61073 4.79638 4.84822 4.91931 5.00338 5.08435 5.18633 5.20328 5.30653 5.35524 5.44580 5.49384 5.54954 5.65104 5.68436 5.73180 5.78096 5.82101 5.86486 5.93113 5.94763 6.00133 6.10650 6.13840 6.18433 6.24209 6.37018 6.39079 6.52056 6.53994 6.70116 6.99585 7.67644 7.95490 8.38625 8.62920 9.50553 10.06385 10.41970 11.43251 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.004716 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.387640 B = 5935.204368 C = 8039.689513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.117 4.117 5 H 0.116 0.884 6 C -0.151 4.151 7 C -0.186 4.186 8 H 0.124 0.876 9 C 0.548 3.452 10 O -0.549 6.549 11 N -0.702 5.702 12 C 0.168 3.832 13 H 0.087 0.913 14 C 0.148 3.852 15 N -0.732 5.732 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C -0.162 4.162 25 C -0.172 4.172 26 C -0.185 4.185 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.404 0.596 37 H 0.024 0.976 38 H 0.035 0.965 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.686 -11.105 13.298 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.129 4.129 4 C -0.135 4.135 5 H 0.134 0.866 6 C -0.188 4.188 7 C -0.208 4.208 8 H 0.142 0.858 9 C 0.334 3.666 10 O -0.429 6.429 11 N -0.351 5.351 12 C 0.064 3.936 13 H 0.105 0.895 14 C 0.020 3.980 15 N -0.377 5.377 16 C -0.373 4.373 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.182 4.182 25 C -0.209 4.209 26 C -0.222 4.222 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.239 0.761 37 H 0.042 0.958 38 H 0.053 0.947 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.313 -11.625 12.868 17.344 hybrid contribution -0.387 1.380 -0.372 1.480 sum -0.700 -10.245 12.496 16.175 Atomic orbital electron populations 1.21785 0.95991 1.01448 1.01855 1.21491 0.95557 0.96654 1.02168 1.21252 0.92117 0.97171 1.02369 1.22393 0.94547 0.95726 1.00867 0.86569 1.23059 1.02879 1.02483 0.90420 1.22319 0.98127 0.98885 1.01428 0.85823 1.19523 0.84202 0.83352 0.79489 1.90580 1.68731 1.34307 1.49240 1.45876 1.23908 1.10709 1.54635 1.20790 0.81192 0.99226 0.92430 0.89528 1.20915 0.92202 0.90518 0.94355 1.42361 1.17407 1.17281 1.60618 1.19264 1.01350 0.91927 1.24756 0.91079 1.24746 0.96683 0.98346 1.01022 1.69678 1.07360 1.35711 1.45164 0.86122 0.77245 0.83826 0.79008 1.20544 1.21846 1.21875 1.22651 0.99803 0.92615 1.03087 1.22894 0.95602 1.02957 0.99479 1.23256 1.03063 0.99222 0.96665 0.92904 0.92871 0.92608 0.91803 0.92010 0.91128 0.91752 0.88145 0.88555 0.76083 0.95776 0.94747 0.77986 0.93535 0.87956 0.88779 0.89256 0.89987 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.12 5.89 -26.73 -0.16 -1.27 16 3 C -0.09 -0.95 5.50 -26.73 -0.15 -1.09 16 4 C -0.12 -1.40 5.25 -90.62 -0.48 -1.88 16 5 H 0.12 1.57 7.60 -51.93 -0.39 1.17 16 6 C -0.15 -1.63 9.88 -26.73 -0.26 -1.89 16 7 C -0.19 -2.49 5.91 -91.78 -0.54 -3.04 16 8 H 0.12 1.60 8.14 -51.93 -0.42 1.17 16 9 C 0.55 9.04 6.95 -10.98 -0.08 8.96 16 10 O -0.55 -10.44 13.28 5.56 0.07 -10.36 16 11 N -0.70 -11.51 4.50 -53.80 -0.24 -11.76 16 12 C 0.17 2.91 2.43 -67.93 -0.17 2.74 16 13 H 0.09 1.71 7.34 -51.93 -0.38 1.33 16 14 C 0.15 2.93 5.80 -4.05 -0.02 2.91 16 15 N -0.73 -18.23 5.43 -59.91 -0.33 -18.55 16 16 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 C -0.16 -2.36 5.36 -90.61 -0.49 -2.85 16 25 C -0.17 -2.33 10.18 -26.69 -0.27 -2.60 16 26 C -0.19 -2.60 9.74 -26.69 -0.26 -2.86 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.59 7.88 -51.93 -0.41 0.18 16 34 H 0.10 0.89 8.03 -51.93 -0.42 0.47 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.40 6.36 8.60 -40.82 -0.35 6.01 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.39 10.28 7.33 -40.82 -0.30 9.98 16 40 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.10 1.39 8.11 -51.93 -0.42 0.97 16 42 H 0.09 1.35 8.05 -51.93 -0.42 0.93 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.12 1.90 5.02 -51.93 -0.26 1.64 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -30.79 367.23 -9.98 -40.77 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -7.97 Total: 15.45 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.75 Total: -11.03 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.16 Total: -57.57 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.79 -9.98 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733184068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.796 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds