Wall clock time and date at job start Tue Mar 31 2020 01:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.54795 * 29.32827 * 4 3 2 6 6 C 1.53000 * 117.50165 * 243.62462 * 4 3 2 7 7 C 1.52994 * 59.99907 * 252.50793 * 6 4 3 8 8 H 1.09002 * 117.49788 * 107.49222 * 7 6 4 9 9 C 1.50701 * 117.51900 * 252.51694 * 7 6 4 10 10 O 1.21278 * 120.00254 * 68.62864 * 9 7 6 11 11 N 1.34782 * 119.99870 * 248.63484 * 9 7 6 12 12 C 1.46501 * 119.99727 * 180.02562 * 11 9 7 13 13 H 1.08995 * 109.47503 * 34.99503 * 12 11 9 14 14 C 1.53001 * 109.46959 * 154.99598 * 12 11 9 15 15 N 1.46493 * 109.47078 * 304.99445 * 14 12 11 16 16 C 1.36946 * 119.99966 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99761 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99934 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00358 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99891 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46862 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47213 * 120.00198 * 20 18 16 23 23 H 1.48502 * 109.46639 * 239.99627 * 20 18 16 24 24 C 1.53002 * 109.46816 * 274.98956 * 12 11 9 25 25 C 1.53003 * 117.49620 * 128.74657 * 24 12 11 26 26 C 1.53008 * 117.49513 * 60.09045 * 24 12 11 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 31 31 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 32 32 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 33 33 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 34 34 H 1.09001 * 117.49810 * 359.97438 * 6 4 3 35 35 H 1.08995 * 117.50134 * 145.01745 * 6 4 3 36 36 H 0.96997 * 120.00141 * 359.97438 * 11 9 7 37 37 H 1.09004 * 109.47152 * 64.99418 * 14 12 11 38 38 H 1.09006 * 109.47185 * 184.99381 * 14 12 11 39 39 H 0.97002 * 120.00271 * 0.02562 * 15 14 12 40 40 H 0.96997 * 120.00658 * 180.02562 * 19 18 16 41 41 H 1.08997 * 115.55313 * 274.42146 * 24 12 11 42 42 H 1.09001 * 117.50108 * 0.02562 * 25 24 12 43 43 H 1.08997 * 117.49668 * 145.02207 * 25 24 12 44 44 H 1.08997 * 117.49985 * 214.97842 * 26 24 12 45 45 H 1.08997 * 117.49776 * 359.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 4.0398 0.5853 -0.4827 6 6 4.2769 2.0453 1.2150 7 6 4.2763 2.7945 -0.1190 8 1 3.6511 3.6840 -0.1963 9 6 5.5685 2.8390 -0.8931 10 8 6.0106 1.8268 -1.3939 11 7 6.2330 4.0038 -1.0289 12 6 7.4888 4.0472 -1.7820 13 1 7.4375 3.3460 -2.6149 14 6 7.7125 5.4621 -2.3195 15 7 6.5467 5.8765 -3.1038 16 6 6.5191 7.1150 -3.6874 17 1 7.3571 7.7861 -3.5698 18 6 5.4142 7.5079 -4.4300 19 7 4.3927 6.6903 -4.5729 20 14 5.3769 9.1971 -5.2267 21 1 6.6376 9.9183 -4.9170 22 1 5.2400 9.0477 -6.6978 23 1 4.2232 9.9683 -4.6980 24 6 8.6488 3.6620 -0.8617 25 6 9.6038 2.5700 -1.3480 26 6 8.6112 2.2730 -0.2211 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.6520 2.4422 2.0150 35 1 5.2121 1.5845 1.5330 36 1 5.8792 4.8135 -0.6286 37 1 7.8524 6.1498 -1.4854 38 1 8.5995 5.4741 -2.9530 39 1 5.7939 5.2739 -3.2091 40 1 3.6207 6.9646 -5.0922 41 1 9.0727 4.4760 -0.2737 42 1 9.4059 2.1263 -2.3237 43 1 10.6559 2.6654 -1.0796 44 1 9.0107 2.1731 0.7880 45 1 7.7598 1.6338 -0.4551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733184068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:56 Heat of formation + Delta-G solvation = -14.666943 kcal Electronic energy + Delta-G solvation = -22115.888505 eV Core-core repulsion = 18940.729862 eV Total energy + Delta-G solvation = -3175.158643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.26790 -39.11136 -37.65874 -36.63069 -34.95441 -34.69246 -32.97653 -29.89658 -28.30068 -26.11894 -24.93298 -23.23200 -23.08550 -22.79979 -21.61272 -21.29009 -20.96469 -19.24431 -18.19789 -17.39546 -16.70759 -16.60075 -16.08840 -15.85316 -15.62884 -15.37287 -15.10963 -14.83616 -14.39483 -14.15816 -13.86611 -13.62858 -13.20993 -13.10803 -12.92091 -12.83839 -12.69737 -12.49066 -12.31031 -12.15619 -12.05065 -11.93310 -11.85908 -11.66815 -11.30900 -11.14199 -11.08082 -11.00797 -10.91773 -10.62089 -9.92283 -9.03416 -7.95622 -5.25826 1.47759 1.48581 1.55929 1.58655 2.15558 2.54952 2.89084 3.00294 3.38719 3.56966 3.65654 3.79597 3.87921 3.97500 4.10427 4.15555 4.19593 4.24920 4.31047 4.36601 4.41281 4.45596 4.62545 4.64529 4.80000 4.84640 4.88972 4.89523 4.94927 5.00420 5.03910 5.09372 5.10727 5.21081 5.28116 5.36807 5.38104 5.41763 5.49237 5.52397 5.61195 6.24912 6.63893 7.32076 7.32381 8.04564 8.29062 9.27706 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.004716 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.387640 B = 5935.204368 C = 8039.689513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.119 4.119 5 H 0.096 0.904 6 C -0.122 4.122 7 C -0.205 4.205 8 H 0.128 0.872 9 C 0.542 3.458 10 O -0.580 6.580 11 N -0.701 5.701 12 C 0.178 3.822 13 H 0.054 0.946 14 C 0.151 3.849 15 N -0.743 5.743 16 C -0.245 4.245 17 H 0.079 0.921 18 C -0.073 4.073 19 N -0.969 5.969 20 Si 0.974 3.026 21 H -0.264 1.264 22 H -0.297 1.297 23 H -0.292 1.292 24 C -0.164 4.164 25 C -0.166 4.166 26 C -0.180 4.180 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.408 0.592 37 H 0.041 0.959 38 H 0.035 0.965 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.105 0.895 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 -10.500 15.234 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.125 4.125 4 C -0.138 4.138 5 H 0.114 0.886 6 C -0.160 4.160 7 C -0.226 4.226 8 H 0.146 0.854 9 C 0.330 3.670 10 O -0.462 6.462 11 N -0.350 5.350 12 C 0.073 3.927 13 H 0.072 0.928 14 C 0.024 3.976 15 N -0.386 5.386 16 C -0.376 4.376 17 H 0.097 0.903 18 C -0.265 4.265 19 N -0.619 5.619 20 Si 0.803 3.197 21 H -0.189 1.189 22 H -0.224 1.224 23 H -0.219 1.219 24 C -0.184 4.184 25 C -0.203 4.203 26 C -0.217 4.217 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.147 0.853 35 H 0.114 0.886 36 H 0.243 0.757 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.139 0.861 42 H 0.098 0.902 43 H 0.135 0.865 44 H 0.124 0.876 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.327 -11.010 14.832 18.474 hybrid contribution -0.515 1.133 -0.975 1.581 sum -0.188 -9.877 13.857 17.018 Atomic orbital electron populations 1.21775 0.95086 1.02088 1.01985 1.21479 0.96319 0.95850 1.02100 1.21243 0.90738 0.97979 1.02500 1.22408 0.95571 0.94084 1.01711 0.88589 1.23168 1.02856 1.00147 0.89780 1.22309 0.96852 0.99902 1.03526 0.85388 1.20072 0.84945 0.82748 0.79228 1.90566 1.69741 1.35277 1.50577 1.45869 1.23797 1.10980 1.54339 1.20537 0.82941 0.96783 0.92420 0.92764 1.21035 0.90306 0.92170 0.94117 1.42532 1.18466 1.16468 1.61177 1.19675 1.01233 0.92782 1.23921 0.90279 1.25558 0.96618 1.02026 1.02296 1.69839 1.08001 1.37655 1.46452 0.85071 0.77633 0.79655 0.77355 1.18866 1.22424 1.21918 1.22558 0.99131 0.93563 1.03142 1.22980 0.96884 1.01724 0.98737 1.23196 1.02508 0.98041 0.97974 0.92051 0.91935 0.93277 0.92967 0.91034 0.92587 0.89968 0.85266 0.88579 0.75669 0.94119 0.94668 0.79428 0.94075 0.86069 0.90247 0.86521 0.87643 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.61 16 2 C -0.12 -2.11 5.89 30.59 0.18 -1.93 16 3 C -0.09 -1.73 5.50 30.59 0.17 -1.56 16 4 C -0.12 -2.82 5.25 -10.80 -0.06 -2.88 16 5 H 0.10 2.68 7.60 -2.39 -0.02 2.67 16 6 C -0.12 -2.42 9.88 30.59 0.30 -2.11 16 7 C -0.20 -5.44 5.91 -11.54 -0.07 -5.51 16 8 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 9 C 0.54 18.30 6.95 87.66 0.61 18.91 16 10 O -0.58 -22.95 13.28 -3.02 -0.04 -22.99 16 11 N -0.70 -23.25 4.50 -442.53 -1.99 -25.24 16 12 C 0.18 6.21 2.43 44.99 0.11 6.32 16 13 H 0.05 2.24 7.34 -2.39 -0.02 2.23 16 14 C 0.15 5.89 5.80 86.38 0.50 6.39 16 15 N -0.74 -37.36 5.43 -343.45 -1.87 -39.23 16 16 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 17 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 18 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 19 N -0.97 -59.30 13.06 21.65 0.28 -59.02 16 20 Si 0.97 45.75 29.55 68.60 2.03 47.77 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 C -0.16 -4.58 5.36 -10.79 -0.06 -4.63 16 25 C -0.17 -4.26 10.18 30.62 0.31 -3.95 16 26 C -0.18 -4.84 9.74 30.62 0.30 -4.54 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.33 7.88 -2.39 -0.02 1.32 16 34 H 0.13 1.84 8.03 -2.39 -0.02 1.82 16 35 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.41 12.84 8.60 -92.71 -0.80 12.04 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.37 20.46 7.33 -92.71 -0.68 19.78 16 40 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.12 2.96 8.11 -2.39 -0.02 2.94 16 42 H 0.08 2.28 8.05 -2.39 -0.02 2.26 16 43 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.09 3.03 5.02 -2.39 -0.01 3.02 16 Total: -1.00 -66.80 367.23 2.22 -64.58 By element: Atomic # 1 Polarization: 48.02 SS G_CDS: -0.51 Total: 47.51 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.32 Total: -13.38 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -3.57 Total: -123.49 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.04 Total: -22.99 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -66.80 2.22 -64.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733184068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.911 kcal (2) G-P(sol) polarization free energy of solvation -66.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds